BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0201.8
(841 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9FWC7 Putative plant disease resistance polyprotein [... 42 0.059
UniRef100_Q60E20 Putative polyprotein [Oryza sativa] 42 0.077
UniRef100_Q7XPJ7 OSJNBa0087O24.13 protein [Oryza sativa] 42 0.100
UniRef100_Q8SAX4 Putative polyprotein [Oryza sativa] 41 0.13
UniRef100_Q8LAQ8 Hypothetical protein [Arabidopsis thaliana] 41 0.17
UniRef100_Q852F5 Putative polyprotein [Oryza sativa] 40 0.22
UniRef100_Q9FYC9 Hypothetical protein F22J12_60 [Arabidopsis tha... 40 0.22
UniRef100_UPI000042D4F7 UPI000042D4F7 UniRef100 entry 40 0.29
UniRef100_Q6H4S3 Hypothetical protein OSJNBa0041C07.1 [Oryza sat... 40 0.29
UniRef100_Q9S9R5 F28J9.14 [Arabidopsis thaliana] 40 0.29
UniRef100_Q947Y7 Putative mutator-like transposase [Oryza sativa] 40 0.38
UniRef100_Q9SQW9 Putative retroelement pol polyprotein [Arabidop... 39 0.50
UniRef100_O24099 MtN12 protein [Medicago truncatula] 39 0.50
UniRef100_O49369 Hypothetical protein F10M6.150 [Arabidopsis tha... 39 0.65
UniRef100_Q8LLX2 Putative retroelement [Oryza sativa] 39 0.65
UniRef100_Q9LEQ8 Hypothetical protein T9L3_110 [Arabidopsis thal... 39 0.65
UniRef100_Q9ATL1 Gag protein [Zea mays] 39 0.65
UniRef100_Q7XER7 Contains similarity to gag-pol polyprotein [Ory... 39 0.65
UniRef100_Q8S653 Putative retroelement [Oryza sativa] 39 0.65
UniRef100_Q94GG1 Putative polyprotein [Oryza sativa] 39 0.85
>UniRef100_Q9FWC7 Putative plant disease resistance polyprotein [Oryza sativa]
Length = 894
Score = 42.4 bits (98), Expect = 0.059
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P + +F GSD WL E +F + + + L++ G A W++ ++ ++++
Sbjct: 120 PKMDFPRFDGSDVRIWLNMCETYFDMYQITQNFKVSAVVLHMSGNAAQWYHSYKLVNEVN 179
Query: 147 SWEKFREVFKLQF 159
SW++FR +F
Sbjct: 180 SWDQFRMAVATEF 192
>UniRef100_Q60E20 Putative polyprotein [Oryza sativa]
Length = 1475
Score = 42.0 bits (97), Expect = 0.077
Identities = 22/60 (36%), Positives = 29/60 (47%)
Query: 79 SQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWF 138
+Q + L P L++ FSG DP WL E FF PL+ +L G+AL WF
Sbjct: 86 NQYAEAVLKGPRLEIPLFSGEDPIDWLKQCEKFFEITGTPLDQWVNLAVAHLNGRALKWF 145
>UniRef100_Q7XPJ7 OSJNBa0087O24.13 protein [Oryza sativa]
Length = 1311
Score = 41.6 bits (96), Expect = 0.100
Identities = 37/151 (24%), Positives = 59/151 (38%), Gaps = 13/151 (8%)
Query: 53 NGHLRSIPPQPPPIYHHNPAPYHNYPSQTQHS---ALSSPPLKLIKFSGSDPTFWLLNTE 109
N + P PP + +NP P+H + HS A S + F G P W+ E
Sbjct: 249 NPYYHQEPFHPPHHHQYNPEPHHTNYAHRPHSADPAKRSRNVDFPTFEGDYPESWIRKAE 308
Query: 110 VFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQLD--SWEKFREVFKLQFIQFRSEHI 167
+F + P E + +++ G+A W SW +F+ + +F
Sbjct: 309 KYFSLYQTPEEDKVLLAEVHISGRADQWIESSAVPTASLSWPEFKTMVCQRF-------- 360
Query: 168 AASSGIVLEKTTVVVPPQKGVTVYHDESETT 198
AA S I + +T + V Y D+ E T
Sbjct: 361 AAKSKIEITETFRNLKQYGSVDSYIDKFEET 391
>UniRef100_Q8SAX4 Putative polyprotein [Oryza sativa]
Length = 1087
Score = 41.2 bits (95), Expect = 0.13
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 88 SPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQ 144
SP + KFSGSD WL N E FFL + + L + G A W+ W+ +
Sbjct: 142 SPKMDFPKFSGSDVRVWLDNCETFFLFYQIADGYKVSAAVLNMSGDAANWYQEWKFE 198
>UniRef100_Q8LAQ8 Hypothetical protein [Arabidopsis thaliana]
Length = 272
Score = 40.8 bits (94), Expect = 0.17
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 59 IPPQPPPIYHHNPAPYHN----YPSQ-TQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFL 113
+P PPP + A N +P + +++ L P +++ F G + WL E +F
Sbjct: 77 LPVAPPPPTKQSTAAEDNSIDTHPHRMSRYIQLMKPKIEMPVFEGPNVNSWLTRAERYFE 136
Query: 114 QHPWPLELRFQFIALYLEGQALTWFNLW-RHQLDSWEKFR 152
+ + Q + + +EG AL WFNL R+ W F+
Sbjct: 137 FGSFTNAEKIQLVYMSVEGPALCWFNLENRNPFVDWNDFK 176
>UniRef100_Q852F5 Putative polyprotein [Oryza sativa]
Length = 1155
Score = 40.4 bits (93), Expect = 0.22
Identities = 18/73 (24%), Positives = 36/73 (48%), Gaps = 2/73 (2%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P + +F GSD WL E +F + + L++ G A W++ ++ ++++
Sbjct: 120 PKMDFPRFDGSDVRIWLDMCETYFDMYQITQNFKVSAAVLHMSGNAAQWYHSYKLVNEVN 179
Query: 147 SWEKFREVFKLQF 159
SW++FR +F
Sbjct: 180 SWDQFRMAVATEF 192
>UniRef100_Q9FYC9 Hypothetical protein F22J12_60 [Arabidopsis thaliana]
Length = 221
Score = 40.4 bits (93), Expect = 0.22
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 95 KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQLDSW 148
+F+G WL E FFL P EL+ +++ + TW +WRH W
Sbjct: 73 RFNGDGIKDWLFQIEQFFLIDHTPEELKVDIASIHFDDIDATWHQSIVQSIMWRHVRHDW 132
Query: 149 EKFREVFKLQFIQFRSEHIAASSGIVLEKTTVVVPPQKGVTVYHDESET 197
++ + ++++ + + IA +L++T +G+ VYH E+
Sbjct: 133 WNYKLLLQVRYNKHVDDSIAKLK--LLQET-------EGIEVYHARFES 172
>UniRef100_UPI000042D4F7 UPI000042D4F7 UniRef100 entry
Length = 419
Score = 40.0 bits (92), Expect = 0.29
Identities = 36/135 (26%), Positives = 53/135 (38%), Gaps = 16/135 (11%)
Query: 57 RSIPPQPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDP-TFWLLNTEVFFLQH 115
RS PP+PP P+P H P A + PP + F+G +N +Q+
Sbjct: 70 RSPPPKPP-----RPSPSHQ-PVPAPEPATNLPPALPVTFTGERTRALAFINLLEHSVQY 123
Query: 116 PWPL-----ELRFQFIALYLEGQALTWFNLWR----HQLDSWEKFREVFKLQFIQFRSEH 166
+ L + + +L G A TWF R L SW+ FR F +I
Sbjct: 124 HYDAFFANPSLAVSWASAHLSGPAATWFQKLRATSPEALSSWKAFRSAFADAYIPPSGRL 183
Query: 167 IAASSGIVLEKTTVV 181
+ + L +TT V
Sbjct: 184 LLLEQLLELRQTTTV 198
>UniRef100_Q6H4S3 Hypothetical protein OSJNBa0041C07.1 [Oryza sativa]
Length = 459
Score = 40.0 bits (92), Expect = 0.29
Identities = 25/93 (26%), Positives = 44/93 (46%), Gaps = 13/93 (13%)
Query: 195 SETTADPQQKPQVLSDAKPHTPTSMALSSPVSTQKVSAGIIHIEHFCPTVFETPPTKRPL 254
+ T P++KP++ + A TP S A +P+ + + AG++ + P + P+
Sbjct: 35 TSTAPPPRKKPRLPAAALTPTPRSTAPFAPIPHRVLLAGVLSL----------PASGSPV 84
Query: 255 DISTHCSQVISTPPQIRSD---CIINSFTPDAV 284
+HC + +PP S C + F PDAV
Sbjct: 85 ACRSHCLSLSDSPPPASSASVCCYLLDFDPDAV 117
>UniRef100_Q9S9R5 F28J9.14 [Arabidopsis thaliana]
Length = 525
Score = 40.0 bits (92), Expect = 0.29
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 73 PYHNYP--SQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYL 130
P HN S T A L +F+G WLL E FF + P E + ++++
Sbjct: 119 PSHNIDVISNTYADATQPEKLDFPRFNGDKIQEWLLLVEQFFEIYQTPDEFKVCLVSIHF 178
Query: 131 EGQALTWFN------LWRHQLDSWEKFREVFKLQFIQFRSEHIA 168
+G A W +W H W ++ + ++++ + + IA
Sbjct: 179 DGLANAWHQSISHSVMWEHVRHDWWSYKLLLQVRYNEHVDDSIA 222
>UniRef100_Q947Y7 Putative mutator-like transposase [Oryza sativa]
Length = 2421
Score = 39.7 bits (91), Expect = 0.38
Identities = 33/145 (22%), Positives = 53/145 (35%), Gaps = 11/145 (7%)
Query: 34 DFDTRLSAISGLIDQVSFLNGHLRSIPP---------QPPPIYHHNPAPYHNYPSQTQHS 84
D +L A + + L H +S PP P Y H+PA + +
Sbjct: 1976 DLTAQLGARNAAEIRAEVLGSHPQSPPPANGTNSILFSTPAPYFHDPAMRTAFTGSAVGT 2035
Query: 85 ALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWRHQ 144
+ PP+ +F G +P W N E +F + + L G A W R Q
Sbjct: 2036 STGLPPMPCPQFDGDNPQMWRENCEAYFDTYGVSPAHWVRIATLNFSGNASFWLQSVRSQ 2095
Query: 145 L--DSWEKFREVFKLQFIQFRSEHI 167
L +W + E +F + R + +
Sbjct: 2096 LIGVTWVELCEKVCAKFSRDRHQQL 2120
>UniRef100_Q9SQW9 Putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1661
Score = 39.3 bits (90), Expect = 0.50
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 62 QPPPIYHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLEL 121
Q P + P + P Q + A + + G + WL E FL + E
Sbjct: 202 QTTPTFQTQTFPPQSAPHQPRFEAAPRRTVDYPAYEGGNADDWLFRLEQCFLSNRTLEEE 261
Query: 122 RFQFIALYLEGQALTWFNLW--RHQLDSWEKFREVFKLQF 159
+ + L G ++TW+ R Q+ +W +F+E F L+F
Sbjct: 262 KLEKAVSCLTGASVTWWRCSKDREQIYTWREFQEKFMLRF 301
>UniRef100_O24099 MtN12 protein [Medicago truncatula]
Length = 113
Score = 39.3 bits (90), Expect = 0.50
Identities = 14/30 (46%), Positives = 15/30 (49%)
Query: 61 PQPPPIYHHNPAPYHNYPSQTQHSALSSPP 90
P P P+YH P P H YP H SPP
Sbjct: 62 PHPKPVYHSPPPPVHTYPPHVPHPVYHSPP 91
Score = 35.0 bits (79), Expect = 9.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 61 PQPPPIYHHNPAPYHNYPSQTQHS 84
P P P+YH P P H YP HS
Sbjct: 29 PHPKPVYHSPPPPVHTYPKPVYHS 52
>UniRef100_O49369 Hypothetical protein F10M6.150 [Arabidopsis thaliana]
Length = 1086
Score = 38.9 bits (89), Expect = 0.65
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 91 LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
L+ ++F+G T WL E FFL P EL+ F +L+ + A T W+H
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165
Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
W ++ + ++++ + ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189
>UniRef100_Q8LLX2 Putative retroelement [Oryza sativa]
Length = 813
Score = 38.9 bits (89), Expect = 0.65
Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 2/62 (3%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P +FSG +P W N E +F + E QF L+ G A W + H ++
Sbjct: 110 PKTDFPRFSGENPKLWKKNAEKYFGMYNVAYETWAQFATLHFTGNAALWLQTYEELHSVE 169
Query: 147 SW 148
SW
Sbjct: 170 SW 171
>UniRef100_Q9LEQ8 Hypothetical protein T9L3_110 [Arabidopsis thaliana]
Length = 716
Score = 38.9 bits (89), Expect = 0.65
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 91 LKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN------LWRHQ 144
L+ ++F+G T WL E FFL P EL+ F +L+ + A T W+H
Sbjct: 106 LEHLRFNGDRITEWLFQIEQFFLIDRTPEELKVGFASLHFDDTAATLHQSIVQSMWWKHV 165
Query: 145 LDSWEKFREVFKLQFIQFRSEHIA 168
W ++ + ++++ + ++ IA
Sbjct: 166 RHDWWSYKLLLQVRYDEHVNDSIA 189
>UniRef100_Q9ATL1 Gag protein [Zea mays]
Length = 286
Score = 38.9 bits (89), Expect = 0.65
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 61 PQPPPIYHHNPAPYHNYPSQ-----TQHSALSSPPLKLI------------KFSGS-DPT 102
P+ P H+ AP H P Q + S L+ P L++ K++GS DP
Sbjct: 104 PENPRFPQHDYAPQHGAPFQGINYLDERSPLA-PHLQVTPWPANFRAGAYPKYNGSTDPA 162
Query: 103 FWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFN-LWRHQLDSWEKFREVFKLQFIQ 161
++++ +V + + LEG ALTWF L +DSW R+ F L F
Sbjct: 163 QYIMSYQVAVASAGGDEATMAKSFIIALEGPALTWFTRLPPLSIDSWRSLRDKFLLNFQG 222
Query: 162 FRSE 165
+R +
Sbjct: 223 YRPD 226
>UniRef100_Q7XER7 Contains similarity to gag-pol polyprotein [Oryza sativa]
Length = 1260
Score = 38.9 bits (89), Expect = 0.65
Identities = 40/155 (25%), Positives = 67/155 (42%), Gaps = 27/155 (17%)
Query: 14 PTVLDAIDAKL-ASMATKLQVDFDTRLSAISGLIDQVSFLNGHLRSIP------PQPPPI 66
PT L + A++ + T+ + D + ++GL D + + G + +P +P P+
Sbjct: 106 PTALTPVQAQVNPNPETQTEADMEAMQQNMTGLQDMLRQMAGGEKGLPLSGGIKNRPIPL 165
Query: 67 YHHNPAPYHNYPSQTQHSALSSPPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFI 126
P P Y S+T S I+ + D NT+ + I
Sbjct: 166 QFKFP-PVPRYSSETDPKEFLSIYESAIEAAHGDE-----NTKA-------------KVI 206
Query: 127 ALYLEGQALTW-FNLWRHQLDSWEKFREVFKLQFI 160
L L+G A +W FNL + + SWE+ R+VF L F+
Sbjct: 207 HLALDGIARSWYFNLPANSIYSWEQLRDVFVLNFL 241
>UniRef100_Q8S653 Putative retroelement [Oryza sativa]
Length = 1043
Score = 38.9 bits (89), Expect = 0.65
Identities = 19/62 (30%), Positives = 27/62 (42%), Gaps = 2/62 (3%)
Query: 89 PPLKLIKFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLD 146
P +FSG +P W N E +F + E QF L+ G A W + H ++
Sbjct: 110 PKTDFPRFSGENPKLWKKNAEKYFGMYNVAYETWAQFATLHFTGNAALWLQTYEELHSVE 169
Query: 147 SW 148
SW
Sbjct: 170 SW 171
>UniRef100_Q94GG1 Putative polyprotein [Oryza sativa]
Length = 869
Score = 38.5 bits (88), Expect = 0.85
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 95 KFSGSDPTFWLLNTEVFFLQHPWPLELRFQFIALYLEGQALTWFNLWR--HQLDSWEK 150
KF G +P W N+E +F + P E F L+ G A W + H +++W +
Sbjct: 97 KFDGDNPKLWKTNSEKYFSMYQVPYETWSSFATLHFIGNAALWLQTYEELHCVENWSE 154
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,378,099,030
Number of Sequences: 2790947
Number of extensions: 56916542
Number of successful extensions: 147300
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 147164
Number of HSP's gapped (non-prelim): 129
length of query: 841
length of database: 848,049,833
effective HSP length: 136
effective length of query: 705
effective length of database: 468,481,041
effective search space: 330279133905
effective search space used: 330279133905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)
Lotus: description of TM0201.8