BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0199.9
         (56 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9SDS7 Vacuolar ATP synthase subunit C [Arabidopsis th...    71  6e-12
UniRef100_Q84PC1 Putative vacuolar ATP synthase subunit C [Oryza...    60  1e-08
UniRef100_Q6L4R5 Putative vacuolar ATP synthase subunit C [Oryza...    60  1e-08
UniRef100_Q9SCB9 Vacuolar ATP synthase subunit C [Hordeum vulgare]     51  7e-06
UniRef100_Q88YY1 ATPase of the PilT family [Lactobacillus planta...    32  5.7

>UniRef100_Q9SDS7 Vacuolar ATP synthase subunit C [Arabidopsis thaliana]
          Length = 375

 Score = 71.2 bits (173), Expect = 6e-12
 Identities = 30/38 (78%), Positives = 35/38 (91%)

Query: 5  WWVVSLPVHNSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          +WVVSLPV +SAS LWNRLQ+ +SKHSFDTP+YRFNIP
Sbjct: 5  YWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIP 42


>UniRef100_Q84PC1 Putative vacuolar ATP synthase subunit C [Oryza sativa]
          Length = 408

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 3/44 (6%)

Query: 2  AVVWWVVSLPVH---NSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          A  +W+VSLPV    ++A+ LW RLQ ++S+HSFDTPLYRFN+P
Sbjct: 42 ATRYWIVSLPVQTPGSTANSLWARLQDSISRHSFDTPLYRFNVP 85


>UniRef100_Q6L4R5 Putative vacuolar ATP synthase subunit C [Oryza sativa]
          Length = 377

 Score = 60.1 bits (144), Expect = 1e-08
 Identities = 26/44 (59%), Positives = 35/44 (79%), Gaps = 3/44 (6%)

Query: 2  AVVWWVVSLPVH---NSASELWNRLQQNVSKHSFDTPLYRFNIP 42
          A  +W+VSLPV    ++A+ LW RLQ ++S+HSFDTPLYRFN+P
Sbjct: 2  ATRYWIVSLPVQTPGSTANSLWARLQDSISRHSFDTPLYRFNVP 45


>UniRef100_Q9SCB9 Vacuolar ATP synthase subunit C [Hordeum vulgare]
          Length = 354

 Score = 51.2 bits (121), Expect = 7e-06
 Identities = 25/60 (41%), Positives = 38/60 (62%), Gaps = 7/60 (11%)

Query: 2  AVVWWVVSLPVHNS-----ASELWNRLQQNVSKHSFDTPLYRFNIPISGSEP*TLSAMIS 56
          A  +W+ +LPV +       + LW RLQ+ +S+HSFDTPLYRF +P     P TL ++++
Sbjct: 2  ATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVP--DLRPGTLDSLLA 59


>UniRef100_Q88YY1 ATPase of the PilT family [Lactobacillus plantarum]
          Length = 391

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 15/37 (40%), Positives = 27/37 (72%)

Query: 1  GAVVWWVVSLPVHNSASELWNRLQQNVSKHSFDTPLY 37
          GA++ WV+SL + N+A  L +R+++N+SK +  T L+
Sbjct: 47 GALILWVLSLFLANAAVRLVDRVEKNLSKQNPMTLLF 83


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.327    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,087,362
Number of Sequences: 2790947
Number of extensions: 2320704
Number of successful extensions: 7261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7254
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 848,049,833
effective HSP length: 32
effective length of query: 24
effective length of database: 758,739,529
effective search space: 18209748696
effective search space used: 18209748696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)