BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0118c.1
(565 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip... 261 5e-68
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 248 3e-64
UniRef100_Q9SZD8 Hypothetical protein F19B15.120 [Arabidopsis th... 241 3e-62
UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa] 229 2e-58
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 227 6e-58
UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa] 224 5e-57
UniRef100_Q7X970 BZIP-like protein [Oryza sativa] 221 4e-56
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 218 5e-55
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip... 214 4e-54
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 212 2e-53
UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa] 211 3e-53
UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [A... 209 1e-52
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 209 1e-52
UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa] 203 1e-50
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 199 1e-49
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip... 194 4e-48
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr... 189 2e-46
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi... 186 2e-45
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 180 9e-44
UniRef100_O22220 Putative non-LTR retroelement reverse transcrip... 178 4e-43
>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1382
Score = 261 bits (666), Expect = 5e-68
Identities = 174/573 (30%), Positives = 268/573 (46%), Gaps = 23/573 (4%)
Query: 11 AIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGFRDF 70
AIP+YVMSCF + +C +++ I+ +WG + + MHW W L PK GG+GFR+F
Sbjct: 814 AIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGKKKMHWKSWSWLSTPKFLGGMGFREF 873
Query: 71 KAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQKSAWIF 130
FN A+L + WR++T S+ +++ K YFP SF EA + PS+ W SL +
Sbjct: 874 TTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFTWRSLLFGRELL 933
Query: 131 QEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGGCWDRNKVE 190
+G W VG+GK I+ D W+P P + ++ VS LM + CWD + +
Sbjct: 934 AKGVRWGVGDGKTIKIFSDNWIPGFRPQLV-TTLSPFPTDATVSCLMNEDARCWDGDLIR 992
Query: 191 FLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEASSSSARV 250
L A+ IL IP+ D WP + G YS R+ Y+ + + S+S +
Sbjct: 993 SLFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAFFADQSNSGRGM 1052
Query: 251 MPPAL-----WMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEVEE 305
L W LWK +A + T WRA + L L RR + C C+ ++
Sbjct: 1053 ASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNR-DD 1111
Query: 306 TVHHALFSCPLVRMIW--FASPLNLRFDEEG--SVHDFFLSFLATADTNIAGIFLAVLYS 361
TV H CP IW ++ G ++ + FL ++ + +
Sbjct: 1112 TVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWH 1171
Query: 362 VWQARNELLFKWKDSSID------QLLQRASSLRPSRVLLDDGPRA--VQVLPSSWSRPL 413
+W+ARN K + ++ ++L + DG R Q +P W P
Sbjct: 1172 IWEARNNT--KNNNGTVHPQRVVIKILSYVDMILKHNTKTVDGQRGGNTQAIP-RWQPPP 1228
Query: 414 SGVCKMNIDASV-TSSKEAGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRL 472
+ V +N DA++ +SS+ G G ++R+N G+ L A + + V+ P LAEAL +R AL L
Sbjct: 1229 ASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVVLPELAEALAIRRALGL 1288
Query: 473 ATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRRTSNG 532
A + G I + +DCL + G + S + V+ D + L F + +F V R SN
Sbjct: 1289 AKEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLASTFVLCSFMHVNRLSNL 1348
Query: 533 AADALARLAFHYGCMIWIEEAPSEITSITQDDV 565
AA +LAR A C ++ P I I DDV
Sbjct: 1349 AAHSLARNAELSTCTVYRSVIPDYIRDILCDDV 1381
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 248 bits (634), Expect = 3e-64
Identities = 164/559 (29%), Positives = 269/559 (47%), Gaps = 36/559 (6%)
Query: 8 INLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGF 67
+ +A+P+Y MSCF + +C QIE +++ F+W R +HW W L RPK GG+GF
Sbjct: 796 VAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNKKEGRGLHWKAWCHLSRPKAVGGLGF 855
Query: 68 RDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQKSA 127
++ +AFN ALL K WR++T+ S++AK++K+ YF K L A G RPS+ W S+ ++
Sbjct: 856 KEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPSFAWKSIYEAQ 915
Query: 128 WIFQEGGLWRVGNGKNIRA*EDKWV----PHGGPLVYRNDVAESLGV--VH-VSDLMVTN 180
+ ++G +GNG+ I D W+ V R+ + +H V DL++ +
Sbjct: 916 VLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPD 975
Query: 181 GGCWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSE 240
G W+ N V L T IL++ ++ D F W +R G YS ++GY + + ++
Sbjct: 976 GRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQ 1035
Query: 241 GEASSSSARVMPPAL---WMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCC 297
++ V+ P+L + ++WK D P+ WR + L V S L R + C
Sbjct: 1036 ---RNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSC 1092
Query: 298 PRCSEVEETVHHALFSCPLVRMIWFASPLNLRFDEEGSV-------HDFFLSFLATADTN 350
RC ETV+H LF CP R+ W SPL E + H + +++
Sbjct: 1093 VRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESD 1152
Query: 351 IAGIFLAVLYSVWQARNELLFKWKDSSIDQLLQRASSLRPS---------RVLLDDGPRA 401
+ +L+ +W+ RN+L+FK ++ + Q++ +A+ + +V R
Sbjct: 1153 HHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSSTRDRC 1212
Query: 402 VQVLPSSWSRPLSGVCKMNIDASVTSS-KEAGAGMVMRNNHGEVLAAATTELGPVLSPVL 460
V+ W P G K N D + + G G V+RN+ G +L L S +
Sbjct: 1213 VK-----WQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSVLE 1267
Query: 461 AEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDV 520
E +RWA+ ++ +RR+ E+D L + + + LA + D R+LL +F+
Sbjct: 1268 TEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNE-MDIPSLAPRIQDIRNLLRHFEE 1326
Query: 521 FNFTFVRRTSNGAADALAR 539
F F RR N AD AR
Sbjct: 1327 VKFQFTRREGNNVADRTAR 1345
>UniRef100_Q9SZD8 Hypothetical protein F19B15.120 [Arabidopsis thaliana]
Length = 575
Score = 241 bits (616), Expect = 3e-62
Identities = 168/556 (30%), Positives = 265/556 (47%), Gaps = 32/556 (5%)
Query: 10 LAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGFRD 69
+A+P+Y M+CFLL +C QI +++ F+W + MHW WD L K GGIGF+D
Sbjct: 1 MALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKD 60
Query: 70 FKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQKSAWI 129
+AFN ALL K WR++++ +S++AK++K+ YF K L A G RPS+VW S+ S I
Sbjct: 61 IEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEI 120
Query: 130 FQEGGLWRVGNGKNIRA*EDKWV---PHGGPL----VYRNDVAESLGVVHVSDLMVTNGG 182
++G VGNG++I KW+ P L V + A ++ VSDL+ +G
Sbjct: 121 LRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGR 180
Query: 183 CWDRNKVEFLCWPPTARAILSIPLPLQQRD-DCFFWPETRDGCYSTRTGY----SFI*KK 237
W ++ +E L +P R ++ P +R D + W T G Y+ ++GY I K+
Sbjct: 181 EWRKDVIEML-FPEVERKLIGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQIINKR 239
Query: 238 FSEGEASSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCC 297
S E S S ++ K+WK+ P+ W+ + LPV L R + C
Sbjct: 240 SSPQEVSEPSLN----PIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESAC 295
Query: 298 PRCSEVEETVHHALFSCPLVRMIWFAS----PLNLRFDEEGSVHDFFLSFLATAD---TN 350
RC +ETV+H LF C R+ W S PL + + V+ +++ L +
Sbjct: 296 IRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYWVFNLGNGNPQWEK 355
Query: 351 IAGIFLAVLYSVWQARNELLFKWKDSSIDQLLQRASS------LRPSRVLLDDGPRAVQV 404
+ + +L+ +W+ RNEL+F+ ++ + ++L+RA +R P+ +
Sbjct: 356 ASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRS 415
Query: 405 LPSSWSRPLSGVCKMNIDASVTSSKE-AGAGMVMRNNHGEVLAAATTELGPVLSPVLAEA 463
W P K N DA+ E G G V+RN GEV L + S + AE
Sbjct: 416 SCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAEL 475
Query: 464 LGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNF 523
MRWA+ ++ + + E+D L N + L + D + LL F F
Sbjct: 476 EAMRWAVLSLSRFQYNYVIFESDSQVLIEILNND-EIWPSLKPTIQDLQRLLSQFTEVKF 534
Query: 524 TFVRRTSNGAADALAR 539
F+ R N A+ +AR
Sbjct: 535 VFIPREGNTLAERVAR 550
>UniRef100_Q94H40 Putative reverse transcriptase [Oryza sativa]
Length = 1185
Score = 229 bits (584), Expect = 2e-58
Identities = 155/546 (28%), Positives = 244/546 (44%), Gaps = 43/546 (7%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
I I AIP + MS F + +C I I+RF+WG D +HR +HW W +C PK GG
Sbjct: 611 IKSIAQAIPVFAMSVFRIPKKICDCISEAIARFWWGDDENHRRIHWKAWWRMCIPKQRGG 670
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GFRD FN A+LAK WR + S+ A++ + Y+P + L A+ SY W S+
Sbjct: 671 LGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRARPKKGSSYAWQSIL 730
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGGCW 184
+ F +G +WR+G+G + ED +P ++ + V +L+ G W
Sbjct: 731 SGSECF-KGYIWRIGDGSQVNIWEDSLIPSSSNGKVLTPRGRNI-ITKVEELINPVSGGW 788
Query: 185 DRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*K-KFSEGEA 243
D + ++ L WP A IL IP+ R+D W TR G +S R+ Y KF E
Sbjct: 789 DEDLIDTLFWPIDANRILQIPIS-AGREDFVAWHHTRSGIFSVRSAYHCQWNAKFGSKER 847
Query: 244 SSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEV 303
A +W LWK + P+ AWR ++P + IL + + CP CS
Sbjct: 848 LPDGASSSSRPVWDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCPVCSSG 907
Query: 304 EETVHHALFSCPLVRMIW-------FASPLNLRFDEEGS--VHDFFLSFLATADTNIAGI 354
E + H +F+C ++IW P+ L FD GS V + + N G+
Sbjct: 908 VEDIKHMVFTCRRAKLIWKQLGIWSRIQPI-LGFDRSGSVLVEEMIRKGGKVSHLNAIGM 966
Query: 355 FLAVLYSVWQARNELLFKWKDSSIDQLLQRASSLRPSRVLLDDGPRAVQVLPSSWSRPLS 414
+L W + W + QL+Q P+R +
Sbjct: 967 TELILTGAW-------YIWWERR--QLVQGERIQNPARSAM------------------- 998
Query: 415 GVCKMNIDASVTSSK-EAGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRLA 473
+ + + +++ K G G+V+R++ G +AA+ L VL +AEA +R L LA
Sbjct: 999 SIATLTTNYMLSNKKGSGGIGVVLRDHLGACVAASQAFLPHVLDAPMAEAFALRDGLSLA 1058
Query: 474 TKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRRTSNGA 533
+G + + ++TDC+++ + G + +V DC+ + F + R SN
Sbjct: 1059 QHIGAKNVIVQTDCMQVVSTMMDGGFSATAAMSVFDDCKLMWDGFGTISIEHCNRNSNQV 1118
Query: 534 ADALAR 539
A LAR
Sbjct: 1119 AHELAR 1124
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 227 bits (579), Expect = 6e-58
Identities = 146/491 (29%), Positives = 231/491 (46%), Gaps = 20/491 (4%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
+ I LA+P YVMSCF L LC ++ ++ F+W R +HWL W L PK GG
Sbjct: 771 LKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHWLSWQRLTLPKDQGG 830
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
GF+D + FN ALLAK WR++ + S+ ++++++ YF FL A +G RPSY W S+
Sbjct: 831 FGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPSYAWRSIL 890
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGG---PLVYRNDVAESLGVVHVSDLMVTNG 181
+ +G +GNG+ DKW+ G PL R + L V + D N
Sbjct: 891 FGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLIDPTSRN- 949
Query: 182 GCWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEG 241
W+ N + L +P I+ PL ++D F W + +G YS +TGY F+ K+
Sbjct: 950 --WNLNMLRDL-FPWKDVEIILKQRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQVHHR 1006
Query: 242 EASSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCS 301
+ + +L+ K+W P+ W+A +PV L RG+ + C C
Sbjct: 1007 LYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCD 1066
Query: 302 EVEETVHHALFSCPLVRMIWFASPLNLRFDE-EGSVHDFFLSFLATADTN-----IAGIF 355
ET++H LF CPL R +W + L+ E SV+ + N + +
Sbjct: 1067 TENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVS 1126
Query: 356 LAVLYSVWQARNELLFKWKDSSIDQLLQRASSLR----PSRVLLDDGPRAVQVLPSSWSR 411
+L+ +W+ RN LLF+ K S L+ +A ++ + + + +++ + W
Sbjct: 1127 PWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQNDEKHLKI--TKWCP 1184
Query: 412 PLSGVCKMNIDASVTSSKE-AGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWAL 470
PL G K NI + + +GA V+R++ G+VL + V SP A+ WAL
Sbjct: 1185 PLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPYSAKIRSWEWAL 1244
Query: 471 RLATKLGFRRI 481
T F R+
Sbjct: 1245 ESMTHHHFDRV 1255
>UniRef100_Q7XCS1 Putative reverse transcriptase [Oryza sativa]
Length = 791
Score = 224 bits (571), Expect = 5e-57
Identities = 166/585 (28%), Positives = 263/585 (44%), Gaps = 37/585 (6%)
Query: 11 AIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGFRDF 70
AIP YVM F L + + + ++ F+W R HW WD+L +PK GG+GFRD+
Sbjct: 209 AIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDY 268
Query: 71 KAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQKSAWIF 130
FN ALLA+ WR++T S+ A++ KA YFP S ++ G S W S++ +
Sbjct: 269 WLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLL 328
Query: 131 QEGGLWRVGNGKNIRA*EDKWVPHG---GPLVYRNDVAESLGVVHVSDLMVTNGGCWDRN 187
++G +WRVGNG +IR D W+P P+ + + + VSDL +T G WD
Sbjct: 329 KKGIIWRVGNGNSIRIWRDPWLPRDHSRRPITGK----ANCRLKWVSDL-ITEDGSWDVP 383
Query: 188 KVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEASSSS 247
K+ A IL+I + + +D W ++G +S R+ Y + + E+SSS
Sbjct: 384 KIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSG 443
Query: 248 ARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEVEETV 307
+ A W +WK + AWR + L +R + + C C E
Sbjct: 444 TNNINKA-WEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDD 502
Query: 308 HHALFSCPLVRMIW--FASPLNLRFDEEGSVHDFFLSF--LATADTNIAGIFLAVLYSVW 363
HAL C +W ++ D + SV F F L +FL L+ W
Sbjct: 503 AHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNW 562
Query: 364 QARNELLF-----------KWKDSSIDQLLQ-----RASSLRPSRVL----LDDGP--RA 401
RNEL+ ++ S +D L Q +A ++ V+ L GP R
Sbjct: 563 YVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRV 622
Query: 402 VQVLPSSWSRPLSGVCKMNIDASV-TSSKEAGAGMVMRNNHGEVLAAATTELGPVLSPVL 460
+ W RP G K+N+D S SS + G GM++RN+ G+++ + L +P+
Sbjct: 623 LNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLE 682
Query: 461 AEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDV 520
+E L+LA I +ETDC + G +FS LA ++ + R LL V
Sbjct: 683 SELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGTGRDFSVLANIIHEARHLLVGERV 742
Query: 521 FNFTFVRRTSNGAADALARLA-FHYGCMIWIEEAPSEITSITQDD 564
+ + R+ N + LA A + W+ E+ + I+ + ++
Sbjct: 743 ISIKKICRSQNCISHHLANTARADFLAGFWLGESCNLISHLLSEN 787
>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
Length = 2367
Score = 221 bits (563), Expect = 4e-56
Identities = 157/535 (29%), Positives = 243/535 (45%), Gaps = 36/535 (6%)
Query: 11 AIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGFRDF 70
AIP YVM F L + + + ++ F+W R HW WD+L +PK GG+GFRD+
Sbjct: 1533 AIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQRKTHWKAWDSLTKPKSLGGLGFRDY 1592
Query: 71 KAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQKSAWIF 130
+ FN ALLA+ WR++T S+ A++ KA YFP S ++ G S W S++ +
Sbjct: 1593 RLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSSPAWRSIEYGLDLL 1652
Query: 131 QEGGLWRVGNGKNIRA*EDKWVPHG---GPLVYRNDVAESLGVVHVSDLMVTNGGCWDRN 187
++G +WRVGNG +IR D W+P P+ + + + VSDL +T G WD
Sbjct: 1653 KKGIIWRVGNGNSIRIWRDSWLPRDHSRRPITGK----ANCRLKWVSDL-ITEDGSWDVP 1707
Query: 188 KVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEASSSS 247
K+ A IL+I + + +D W ++G +S R+ Y + + E+SSS
Sbjct: 1708 KIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSG 1767
Query: 248 ARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEVEETV 307
+ A W +WK + AWR + L +R + + C C E
Sbjct: 1768 TNNINKA-WEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMCQICDRENEDD 1826
Query: 308 HHALFSCPLVRMIW--FASPLNLRFDEEGSVHDFFLSF--LATADTNIAGIFLAVLYSVW 363
HAL C +W ++ D + SV F F L +FL L+ W
Sbjct: 1827 AHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQAMFLMTLWRNW 1886
Query: 364 QARNELLF-----------KWKDSSIDQLLQ-----RASSLRPSRVL----LDDGP--RA 401
RNEL+ ++ S +D L Q +A ++ V+ L GP R
Sbjct: 1887 YVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVKGKHVVRTVPLKGGPKYRV 1946
Query: 402 VQVLPSSWSRPLSGVCKMNIDASV-TSSKEAGAGMVMRNNHGEVLAAATTELGPVLSPVL 460
+ W RP G K+N+D S SS + G GM++RN+ G+++ + L +P+
Sbjct: 1947 LNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDIIFTSCKPLERCNNPLE 2006
Query: 461 AEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLL 515
+E L+LA I +ETDC + G +FS LA ++ + R LL
Sbjct: 2007 SELRACVEGLKLAIHWTLLPIQVETDCASVVQLLQGIGRDFSVLANIIHEARHLL 2061
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 218 bits (554), Expect = 5e-55
Identities = 143/496 (28%), Positives = 217/496 (42%), Gaps = 44/496 (8%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
I + IP++ M CF L LC QI +MI++++W MHWL W+ L PK GG
Sbjct: 994 IKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGG 1053
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GFRD FN A+LAK WR++ S+ +++ +A YFP K+ SY W S+Q
Sbjct: 1054 LGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQ 1113
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGGCW 184
K + Q G +WRVG+G I D W+P G +L V V +L+ G W
Sbjct: 1114 KGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRKPMTPRGANL-VTKVEELIDPYTGTW 1172
Query: 185 DRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEAS 244
D + + W AI SIP+ ++ +D W GC++ ++ Y ++ E AS
Sbjct: 1173 DEDLLSQTFWEEDVAAIKSIPVHVEM-EDVLAWHFDARGCFTVKSAYKV--QREMERRAS 1229
Query: 245 S------SSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCP 298
S+ W KLWK + WR C + L +R+ LH RG+ + C
Sbjct: 1230 RNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCV 1289
Query: 299 RCSEVEETVHHALFSCPLVRMIWFA---SPLNLRFDEEGSVHDFFLSFLATADTNIAGIF 355
C E H F C V+ +W A L +++ S + S + N
Sbjct: 1290 MCGRYNEDAGHLFFKCKPVKKVWQALNLEELRSMLEQQTSGKNVLQSIYCRPE-NERTSA 1348
Query: 356 LAVLYSVWQARNELLFKWKDSSIDQLLQRASSLRPSRVLLDDGPRAVQVLPSSWSRPLSG 415
+ L+ W+ RNE + PR + + W RP
Sbjct: 1349 IVCLWQWWKERNE---------------------------EKSPRTGEC--AVWRRPPLN 1379
Query: 416 VCKMNIDASVTSS-KEAGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRLAT 474
K+N D + +S+ K+ G G V+R+ G VL A + AE + A++ A+
Sbjct: 1380 FVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTAS 1439
Query: 475 KLGFRRIWIETDCLEL 490
+ G RI +ETD + L
Sbjct: 1440 ERGMSRIELETDSMML 1455
>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 214 bits (546), Expect = 4e-54
Identities = 158/559 (28%), Positives = 260/559 (46%), Gaps = 47/559 (8%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
I I +A+P Y M+CFLL +C++I +I+ F+WG + G
Sbjct: 1155 IKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWGKENE------------------GD 1196
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GF+D FN ALLAK WRI+T +S+LA++YK +Y+P ++L A KG SY W S+Q
Sbjct: 1197 LGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHASYGWNSIQ 1256
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGGCW 184
+ + Q+G R+G+G+ + ED W+P P R + + + V+DL N W
Sbjct: 1257 EGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDE--DMKVADLWRENKREW 1314
Query: 185 DRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*K-KFSEGEA 243
D E + P + S+ L D + W TR+ Y+ R+GY +E E
Sbjct: 1315 DPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEI 1374
Query: 244 SSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEV 303
+ +P L ++W+ P+ WR L + L R + +P C RC
Sbjct: 1375 INPLEGDVP--LKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNA 1432
Query: 304 EETVHHALFSCPLVRMIW----FASPLNLRFDEEGSVHDFFLSFLATADTNIA---GIF- 355
+ET++H +F+C +++W F+ L F + + L + N+ G+
Sbjct: 1433 DETINHIIFTCSYAQVVWRSANFSGSNRLCF-TDNLEENIRLILQGKKNQNLPILNGLMP 1491
Query: 356 LAVLYSVWQARNELLFKWKDSSIDQLLQRASSLRPSRV--LLDDGPRAVQVLPSS----- 408
+++ +W++RNE LF+ D ++ Q+A V +++D + S+
Sbjct: 1492 FWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNTAQSNDRPLS 1551
Query: 409 ----WSRPLSGVCKMNIDASVTSSKE-AGAGMVMRNNHGEVLAAATTELGPVLSPVLAEA 463
WS P G K N D+ ++ G ++R+ +G VL + +L S + AEA
Sbjct: 1552 RSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKLQQSYSALQAEA 1611
Query: 464 LGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSH-LATVVFDCRSLLPNFDVFN 522
LG AL++ G+ +W E D LEL N+ E H L T+++D R + +
Sbjct: 1612 LGFLHALQMVWIRGYCYVWFEGDNLELTNLINKT--EDHHLLETLLYDIRFWMTKLPFSS 1669
Query: 523 FTFVRRTSNGAADALARLA 541
+V R N AAD L + A
Sbjct: 1670 IGYVNRERNLAADKLTKYA 1688
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 212 bits (540), Expect = 2e-53
Identities = 164/567 (28%), Positives = 261/567 (45%), Gaps = 41/567 (7%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
+ + LA+P Y MSCF L G+ S+IE ++ F+W + R + W+ W L K GG
Sbjct: 949 LKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGG 1008
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GFRD FN ALLAK WR++ S+ A++ KA YF S L+AK + SY W SL
Sbjct: 1009 LGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLL 1068
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGG-- 182
+ ++G +G+G+NIR D V P + E+ + +++L G
Sbjct: 1069 DGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTE--ETYKEMTINNLFERKGSYY 1126
Query: 183 CWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGE 242
WD +K+ I I L ++ D W G Y+ R+GY + +
Sbjct: 1127 FWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLL-----THD 1181
Query: 243 ASSSSARVMPP----ALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCP 298
S++ + PP L ++W +P+ WRA L L RG+ +P CP
Sbjct: 1182 PSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPICP 1241
Query: 299 RCSEVEETVHHALFSCPLVRMIWFASPLNLRFDEEGSVHDF------FLSFLATADTNIA 352
RC E+++HALF+CP M W+ S +L ++ S +DF L+F+ DT ++
Sbjct: 1242 RCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMS-NDFEENISNILNFV--QDTTMS 1298
Query: 353 GIF----LAVLYSVWQARNELLF-KWKDSSIDQLLQRAS------SLRPSRVLLDDGPRA 401
+ +++ +W+ARN ++F K+++S +L + + S R
Sbjct: 1299 DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQ 1358
Query: 402 VQVLPSSWSRPLSGVCKMNIDASVTSSK-EAGAGMVMRNNHGEVLAAATTELGPVLSPVL 460
+ W P + K N DA K EA G ++RN++G ++ + +L +P+
Sbjct: 1359 IAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLE 1418
Query: 461 AEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEF-SHLATVVFDCRSLLPNFD 519
AE + AL+ G+ ++++E DC L N G F S LA + D F
Sbjct: 1419 AETKALLAALQQTWIRGYTQVFMEGDCQTLINLIN--GISFHSSLANHLEDISFWANKFA 1476
Query: 520 VFNFTFVRRTSNGAADALARLAFHYGC 546
F F+RR N A LA+ YGC
Sbjct: 1477 SIQFGFIRRKGNKLAHVLAK----YGC 1499
>UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]
Length = 1833
Score = 211 bits (538), Expect = 3e-53
Identities = 154/577 (26%), Positives = 242/577 (41%), Gaps = 76/577 (13%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
I + A+P+Y+M F + D C RM+ F+WG D R +HW+ W+ + PK GG
Sbjct: 705 IKSVAQALPTYIMGVFKMTDKFCDDYTRMVRNFWWGHDNGERKVHWIAWEKILYPKSHGG 764
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GFRD K FN ALLA+ WR++T S+ A+++KA Y+P + ++ S VW +Q
Sbjct: 765 LGFRDMKCFNQALLARQAWRLLTSPDSLCARVFKAKYYPNGNLVDTAFPTVSSSVWKGIQ 824
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLG---VVHVSDLMVTNG 181
+ ++G +WRVGNG NI+ KWVPHG + +V E G +++V++L+
Sbjct: 825 HGLDLLKQGTIWRVGNGHNIKIWRHKWVPHGEHI----NVLEKKGRNRLIYVNELINEEN 880
Query: 182 GCWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEG 241
CW+ V + A +L I LP Q DD W + G ++ ++ Y +G
Sbjct: 881 RCWNETLVRHVLKEEDANEVLKIRLPNHQMDDFPAWHHEKSGLFTVKSAYKLAWNLSGKG 940
Query: 242 --EASSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPR 299
++SSS+A +W ++W A + W+ D LP RR + N CP
Sbjct: 941 VVQSSSSTATSGERKIWSRVWNAKVQAKVKIFIWKLAQDKLPTWENKRRRKIEMNGTCPV 1000
Query: 300 CSEVEETVHHALFSC-------PLVRMIWFASPLNLRFDEEGSVHDFFLSFLATADTNIA 352
C E +HA C +R +W P +F G D+ L L +
Sbjct: 1001 CGTKGENSYHATVECTKARALREALRAVWHL-PGEDKFLWTGP--DWLLILLDGVNEEQR 1057
Query: 353 GIFLAVLYSVWQARNELLFKWKDSSIDQLLQRASS----LRPSRVLLDDGPRAVQVLPSS 408
+ +L+ W RN+L+ SI + +S L P+R + DD
Sbjct: 1058 THIMYMLWRAWYLRNDLIHGDGRCSIAGSVSFLTSYEEVLLPNRQMPDD---------IK 1108
Query: 409 WSRPLSGVCKMNIDASVTSSKEAGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRW 468
+P+S EA A L L + PV+ E
Sbjct: 1109 GKKPIS-----------AEQAEALAS----------LEGIRCALQWIHMPVILETDNAEV 1147
Query: 469 ALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRR 528
RL TK R +W V+ + ++ + ++R
Sbjct: 1148 VARLKTKHSSRSVW----------------------EGVIMEAKAAMQGLQAVEVAHIKR 1185
Query: 529 TSNGAADALARLAFHYG-CMIWIEEAPSEITSITQDD 564
SN A LA++A G C+ W AP+EI + +
Sbjct: 1186 DSNKVAHTLAQMALSSGNCLEWRLCAPAEILELLNQE 1222
>UniRef100_Q9C697 Reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 209 bits (533), Expect = 1e-52
Identities = 148/554 (26%), Positives = 254/554 (45%), Gaps = 28/554 (5%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
I + +P YVMSCF L + S++ +++F+W + R MHW+ WD LC K GG
Sbjct: 577 IKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSDGG 636
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GFR+ FN+ALLAK WR++T S+ AK++K YF K + L++ K Y PSY W S+
Sbjct: 637 LGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPSYGWRSMI 696
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVP--HGGPLVYRNDVAESLGVVHVSDLMVTNGG 182
+ + +G + RVG+G +I D W+P P Y + + + V L+ +
Sbjct: 697 SARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDP--SLKVKSLIDSRSN 754
Query: 183 CWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGE 242
W+ + ++ L P I ++P+ +D W T+ G Y+ ++GY +EG
Sbjct: 755 FWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEG- 813
Query: 243 ASSSSARVMPPALWMK--LWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRC 300
+ + P +K +WK P+ W+ +PV L +RG++ + C C
Sbjct: 814 ----TTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSC 869
Query: 301 SEVEETVHHALFSCPLVRMIWFASPLNLR---FDEEGSVHDFFLSFLATADTNIAGIFLA 357
EE+++H LF C R IW S + F + F + +
Sbjct: 870 GASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAPYPW 929
Query: 358 VLYSVWQARNELLFKWKDSSIDQLL----QRASSLRPSRVLLDDGPRA-------VQVLP 406
+++ +W+ARNE +F+ D ++L + A S + ++V L ++V
Sbjct: 930 IIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQVELHSERHGSLSIDSRIRVRD 989
Query: 407 SSWSRPLSGVCKMNIDASVTSSKE-AGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALG 465
S SG + ID S +S + +G G ++ GE + LSP+ E
Sbjct: 990 VSQDTTFSGF-RCFIDGSWKASDQFSGTGWFCLSSLGESPTMGAANVRRSLSPLHTEMEA 1048
Query: 466 MRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTF 525
+ WA++ + + TDC +L + E+ + + + +S F F+ +
Sbjct: 1049 LLWAMKCMIGADNQNVAFFTDCSDLVKMVS-SPTEWPAFSVYLEELQSDREEFTNFSLSL 1107
Query: 526 VRRTSNGAADALAR 539
+ R++N AD LAR
Sbjct: 1108 ISRSANVKADKLAR 1121
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 209 bits (533), Expect = 1e-52
Identities = 163/567 (28%), Positives = 260/567 (45%), Gaps = 41/567 (7%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
+ + LA+P Y MSCF L G+ S+IE ++ F+W + R + W+ W L K GG
Sbjct: 1175 LKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGG 1234
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GFRD FN ALLAK WR++ S+ A++ KA YF S L+AK + SY W SL
Sbjct: 1235 LGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLL 1294
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGG-- 182
+ ++G +G+G+NIR D V P + E+ + +++L G
Sbjct: 1295 DGIALLKKGTRHLIGDGQNIRIGLDNIVDSHPPRPLNTE--ETYKEMTINNLFERKGSYY 1352
Query: 183 CWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGE 242
WD +K+ I I L ++ D W G Y+ R+GY + +
Sbjct: 1353 FWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWLL-----THD 1407
Query: 243 ASSSSARVMPP----ALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCP 298
S++ + PP L ++W +P+ WRA L L RG+ +P CP
Sbjct: 1408 PSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCP 1467
Query: 299 RCSEVEETVHHALFSCPLVRMIWFASPLNLRFDEEGSVHDF------FLSFLATADTNIA 352
RC E+++HALF+CP M W S +L ++ S +DF L+F+ DT ++
Sbjct: 1468 RCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMS-NDFEENISNILNFV--QDTTMS 1524
Query: 353 GIF----LAVLYSVWQARNELLF-KWKDSSIDQLLQRAS------SLRPSRVLLDDGPRA 401
+ +++ +W+ARN ++F K+++S +L + + S R
Sbjct: 1525 DFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKTPSPTRQ 1584
Query: 402 VQVLPSSWSRPLSGVCKMNIDASVTSSK-EAGAGMVMRNNHGEVLAAATTELGPVLSPVL 460
+ W P + K N DA K EA G ++RN++G ++ + +L +P+
Sbjct: 1585 IAENKIEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGSMKLAHTSNPLE 1644
Query: 461 AEALGMRWALRLATKLGFRRIWIETDCLELYTFWNRQGGEF-SHLATVVFDCRSLLPNFD 519
AE + AL+ G+ ++++E DC L N G F S LA + D F
Sbjct: 1645 AETKALLAALQQTWIRGYTQVFMEGDCQTLINLIN--GISFHSSLANHLEDISFWANKFA 1702
Query: 520 VFNFTFVRRTSNGAADALARLAFHYGC 546
F F+R+ N A LA+ YGC
Sbjct: 1703 SIQFGFIRKKGNKLAHVLAK----YGC 1725
>UniRef100_Q8H0A5 Putative reverse transcriptase [Oryza sativa]
Length = 1557
Score = 203 bits (516), Expect = 1e-50
Identities = 115/376 (30%), Positives = 187/376 (49%), Gaps = 13/376 (3%)
Query: 11 AIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGFRDF 70
AIP YVM F L + +C + + F+WG + R HW W +L + K GG+GF+D
Sbjct: 1168 AIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDI 1227
Query: 71 KAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQKSAWIF 130
+ FN ALLA+ WR++ S+ A++ KA Y+P S ++ G S W +++ +
Sbjct: 1228 RLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAIEHGLELV 1287
Query: 131 QEGGLWRVGNGKNIRA*EDKWVPHG---GPLVYRNDVAESLGVVHVSDLMVTNGGCWDRN 187
++G +WR+GNG+++R +D W+P P+ +N+ + V+DLM+ N G WD N
Sbjct: 1288 KKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCR----IKWVADLMLDN-GMWDAN 1342
Query: 188 KVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEASSSS 247
K+ + P IL + + +D W + G +S RT Y + +++ EASSSS
Sbjct: 1343 KINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLA-ENWAKEEASSSS 1401
Query: 248 ARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEVEETV 307
+ V W LWK + + WRA + LP +R + + C C +E
Sbjct: 1402 SDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCVICGMEKEDT 1461
Query: 308 HHALFSCPLVRMIWFA----SPLNLRFDEEGSVHDFFLSFLATADTNIAGIFLAVLYSVW 363
HAL CP + +W A + L+LR D+ + + LA + +FL VL+ +W
Sbjct: 1462 MHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGPSWLFNRLALLPDHEQPMFLMVLWRIW 1521
Query: 364 QARNELLFKWKDSSID 379
NE++ SI+
Sbjct: 1522 FVHNEIIHGKPSPSIE 1537
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 199 bits (507), Expect = 1e-49
Identities = 149/525 (28%), Positives = 235/525 (44%), Gaps = 36/525 (6%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
I I AIP+Y MSCFLL L QI + F+W + W+ W L PK GG
Sbjct: 248 IKSIVTAIPTYSMSCFLLPMRLIHQITSAMRWFWWSNTKVKHKIPWVAWSKLNDPKKMGG 307
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+ RD K FN ALLAK WRI+ + S++A+++KA YFPKE L+AK + SY W S+
Sbjct: 308 LAIRDLKDFNIALLAKQSWRILQQPFSLMARVFKAKYFPKERLLDAKATSQSSYAWKSIL 367
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGGCW 184
+ G + GNG NI+ +D W+P P + VSDL++ G W
Sbjct: 368 HGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRPPVGTCDSIYSQLKVSDLLIE--GRW 425
Query: 185 DRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEAS 244
+ + + L I +I + +D W T DG YS ++GY + K + AS
Sbjct: 426 NEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHAS 485
Query: 245 SSSAR-VMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEV 303
S V ++ +WK +A P+ WR+ + LP L RR ++ + C RC E
Sbjct: 486 LPSPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEA 545
Query: 304 EETVHHALFSCPLVRMIWFASPLNLRFDEEGSVHDFFLSFLATADTNIAG-----IFLAV 358
E V+H LF C + + IW + + L + + F + + N + +F +
Sbjct: 546 SEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPFI 605
Query: 359 LYSVWQARNELLFKWKDSSIDQLLQRASSLRPSRVLLDDGPRAVQVLPSSWSRPLSGVC- 417
+ +W+ RN+L+F K SI +Q+A L+D W L+ C
Sbjct: 606 GWRIWKMRNDLIFNNKRWSIPDSIQKA--------LIDQ---------QQWKESLN--CN 646
Query: 418 -----KMNIDASVTSSKEAGAGMVMRN-NHGEVLAAATTELGPVLSPVLAEALGMRWALR 471
K + S + G +R + + + + + P +P+ AEA ++ A+
Sbjct: 647 EQQQRKPQLHDSHNNKCYGGHLKTLRTLSKAQFVLRGMSSIPPTSTPLEAEAEALKLAMI 706
Query: 472 LATKLGFRRIWIETDCLELYTFWNR--QGGEFSHLATVVFDCRSL 514
+LG+ I D L+ R E+S +AT + D ++
Sbjct: 707 HLQRLGYEDIIFHGDVAALFQPITRTTHSCEYSPIATFLRDIENI 751
>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 194 bits (494), Expect = 4e-48
Identities = 134/489 (27%), Positives = 225/489 (45%), Gaps = 17/489 (3%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
+ I LA+P Y+M+CF L GLC+++ ++ F+W +HW+ L PK GG
Sbjct: 745 LKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWWNSMEFSNKIHWIGGKKLTLPKSLGG 804
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
GF+D + FN ALLAK WR+ + KS++++I+K+ YF FL A++G RPSY W S+
Sbjct: 805 FGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPSYTWRSIL 864
Query: 125 KSAWIFQEGGLWR-VGNGKNIRA*EDKWVPHG---GPLVYRNDVAESLGVVHVSDLMVTN 180
+ GGL R +GNG+ DKW+ G P+ + + + V H+ D + N
Sbjct: 865 YGRELL-NGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTRN 923
Query: 181 GGCWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSE 240
W+ K+ L + I+ PL +D + W T +G Y+ ++GY ++ +
Sbjct: 924 ---WNLKKLTELFHEKDVQLIMH-QRPLISSEDSYCWAGTNNGLYTVKSGYERSSRETFK 979
Query: 241 GEASSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRC 300
+ L+ K+W + VP+ W+A L V L RG+ C C
Sbjct: 980 NLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGCLFC 1039
Query: 301 SEVEETVHHALFSCPLVRMIWFASPLNLRFDEEGSVHDFFLSFLATADTN------IAGI 354
E ET++H LF CP R +W S + G+ ++ + N + +
Sbjct: 1040 KEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVIQNSQNFGIPRHMRTV 1099
Query: 355 FLAVLYSVWQARNELLFKWKDSSIDQLLQRASSLRPSRV-LLDDGPRAVQVLPSSWSRPL 413
+L+ +W+ RN+ LF+ + +++ +A + + V W+ P
Sbjct: 1100 SPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKSSGGVSPSEHKWNPPP 1159
Query: 414 SGVCKMNIDASVTSSKE-AGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRL 472
+G K NI + + K+ AG V+R++ G+VL + V S A+ WAL
Sbjct: 1160 AGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSYSQVYSLFDAKIKSWDWALES 1219
Query: 473 ATKLGFRRI 481
F ++
Sbjct: 1220 MDHFHFDKV 1228
>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 189 bits (479), Expect = 2e-46
Identities = 146/520 (28%), Positives = 233/520 (44%), Gaps = 39/520 (7%)
Query: 8 INLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGF 67
+ +A+P + MSCF L C+ + ++ F+W + R +HWL W+ LC PK GG+GF
Sbjct: 644 VAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGLGF 703
Query: 68 RDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQKSA 127
RD FN ALLAK WR++ + A++ K+ YFP FL++ G RPS+ W S+
Sbjct: 704 RDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPSFGWRSILHGR 763
Query: 128 WIFQEGGLWRVGNGKNIRA*EDKWVPHGG---PLVYRNDVAESLGVVHVSDLMVTNGGCW 184
+ G + RVGNGK+IR D W+ G P + + L VSDL+ W
Sbjct: 764 DLLCRGLVKRVGNGKSIRVWIDYWLDDNGLRAPWIKNPIINVDL---LVSDLIDYEKRDW 820
Query: 185 DRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEAS 244
+K+E +P I P+ DD + W + G YS + GY ++ + G+ +
Sbjct: 821 RLDKLEEQFFPDDVVKIRE-NRPVVSLDDFWIWKHNKSGDYSVKLGY-WLASNQNLGQVA 878
Query: 245 SSSARVMPPA---LWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCS 301
+ +M P+ L ++WK P+ W+ +PV +L RG+ + C C
Sbjct: 879 IEA--MMQPSLNDLKTQVWKLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCG 936
Query: 302 EVEETVHHALFSCPLVRMIWFASPLN--LRFDEEGSVHDFFLSFLATAD-----TNIAGI 354
E++ H LFSC R +W S ++ L E GSV+ FL D +
Sbjct: 937 CEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVYANLYHFLINRDNLKWPVELRRS 996
Query: 355 FLAVLYSVWQARNELLFKWKDSSIDQLL-------------QRASSLRPSRVLLDD---- 397
F +++ +W+ RN F+ K ++ + + Q R + V D
Sbjct: 997 FPWIIWRIWKNRNLFFFEGKRFTVLETILKVRKDVEDWFAAQVVEKERRAEVGQSDQQVF 1056
Query: 398 GPRAVQVLPSSWSRPLSGVCKMNIDASVT-SSKEAGAGMVMRNNHGEVLAAATTELGPVL 456
PR V + W P + K N+ S + ++ AG V+RN+ G VL + +
Sbjct: 1057 SPRNVSPV-VRWLPPPTDWVKCNVGLSWSRRNRLAGVAWVLRNDRGNVLMHSRRAFSNIS 1115
Query: 457 SPVLAEALGMRWALRLATKLGFRRIWIETDCLELYTFWNR 496
S + A+ L + WA+ R+ + L NR
Sbjct: 1116 SFLEAQFLSIVWAVESMVSHHVNRVVFGVEAAVLVGVINR 1155
>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 186 bits (471), Expect = 2e-45
Identities = 153/549 (27%), Positives = 239/549 (42%), Gaps = 44/549 (8%)
Query: 11 AIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGGIGFRDF 70
++PSY M CF L LC QI+ +++RF+W R M W+ WD L P GG+GFR+
Sbjct: 740 SMPSYAMMCFKLPASLCKQIQSVLTRFWWDSKPDKRKMAWVSWDKLTLPINEGGLGFREI 799
Query: 71 KAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYV---WLSLQKSA 127
+ AK WRI+ + S+L+++ Y SF++ PS+ W +
Sbjct: 800 E-------AKLSWRILKEPHSLLSRVLLGKYCNTSSFMDCSAS--PSFASHGWRGILAGR 850
Query: 128 WIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNGGCWDRN 187
+ ++G W +G G +I + W+ P E+ + V DL+ + W+
Sbjct: 851 DLLRKGLGWSIGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVE 910
Query: 188 KV--EFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGEASS 245
+ + R I LPLQ D W + G Y+T+TGY+ K + AS
Sbjct: 911 AIRKHLPQYEDQIRKITINALPLQ---DSLVWLPVKSGEYTTKTGYAL--AKLNSFPASQ 965
Query: 246 SSARVMPPALWMK-LWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPRCSEVE 304
W K +WK P+ W+A LPV L RR + C RC + E
Sbjct: 966 LDFN------WQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTE 1019
Query: 305 ETVHHALFSCPLVRMIWFASPLNLRFDEEGSVHDFFLSFLATADTNIA----GIFLAVLY 360
++H L CP + +W +P + F+ + H L A +A G+ A LY
Sbjct: 1020 SSLHLMLL-CPYAKKVWELAP--VLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLY 1076
Query: 361 -----SVWQARNELLFKWKDSSIDQLLQRA---SSLRPSRVLLDDGPRAVQVLPSSWSRP 412
+W+ARN L+F S + L+ +A + LL P + PS P
Sbjct: 1077 PWLLWHLWKARNRLIFDNHSCSEEGLVLKAILDARAWMEAQLLIHHPSPISDYPS--PTP 1134
Query: 413 LSGVCKMNIDASVTSSKEAGAGMVMRNNHGEVLAAATTELGPVLSPVLAEALGMRWALRL 472
V +DA+ T+S G G +++ + + + V S ++AE L + AL
Sbjct: 1135 NLKVTSCFVDAAWTTSGYCGMGWFLQDPYKVKIKENQSSSSFVGSALMAETLAVHLALVD 1194
Query: 473 ATKLGFRRIWIETDCLELYTFWNRQGGEFSHLATVVFDCRSLLPNFDVFNFTFVRRTSNG 532
A G R++ + +DC EL + N G L ++ D R L +F F F+ R SN
Sbjct: 1195 ALSTGVRQLNVFSDCKELISLLN-SGKSIVELRGLLHDIRELSVSFTHLCFFFIPRLSNV 1253
Query: 533 AADALARLA 541
AD+LA+ A
Sbjct: 1254 VADSLAKSA 1262
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 180 bits (457), Expect = 9e-44
Identities = 132/440 (30%), Positives = 199/440 (45%), Gaps = 27/440 (6%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
+ + LA+P Y MSCF L G+ S+IE ++ F+W + R + W+ W L K GG
Sbjct: 414 LKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGG 473
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
+GFRD FN ALLAK WRI+ S+ A++ KA YF S ++AK + SY W SL
Sbjct: 474 LGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLL 533
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGVVHVSDLMVTNG--G 182
+ ++G + +G+GK IR D V P D E + + +L G
Sbjct: 534 SGIALLRKGTRYVIGDGKTIRLGIDNVVDSHPPRPLLTD--EQHNGLSLDNLFQHRGHSR 591
Query: 183 CWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFSEGE 242
CWD K++ I I L + + D W G Y+ R+GY S +
Sbjct: 592 CWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGY-----WLSTHD 646
Query: 243 ASSSSARVMPP----ALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCP 298
S++ + P L K+W +P+ WR LP L RG+ +P CP
Sbjct: 647 PSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPGCP 706
Query: 299 RCSEVEETVHHALFSCPLVRMIWFAS--PLN----LRFDEEGSVHDFFLSFLATADTNIA 352
RC E+++HALF+CP M W S PL L + E ++ + L T T+
Sbjct: 707 RCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITDSQ 766
Query: 353 GIF-LAVLYSVWQARNELLFK--WKDSSIDQLLQRASSLRPSRVLLDDGPRAVQVLP--- 406
+ +L+ +W+ARN ++F + SI + +A + GPR +
Sbjct: 767 KLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQTQGPRRLPKRTTAA 826
Query: 407 --SSWSRPLSGVCKMNIDAS 424
++W +P K N DAS
Sbjct: 827 GNTTWVKPQMPYIKCNFDAS 846
>UniRef100_O22220 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1094
Score = 178 bits (451), Expect = 4e-43
Identities = 134/500 (26%), Positives = 219/500 (43%), Gaps = 39/500 (7%)
Query: 5 ITKINLAIPSYVMSCFLLLDGLCSQIERMISRFYWGGDVSHRTMHWLKWDTLCRPKGCGG 64
+ I +A P Y M+CF L LC+++ ++ F+W + +HW+ L PK GG
Sbjct: 522 LKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWWNSVQDKKKIHWIGAQKLMLPKFLGG 581
Query: 65 IGFRDFKAFNTALLAKNWWRIMTKLKSMLAKIYKAVYFPKESFLEAKKGYRPSYVWLSLQ 124
GF+D + FN ALLAK R+ T S+L++I K+ Y+ FL A KG RPSY W S+
Sbjct: 582 FGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPSYAWQSIL 641
Query: 125 KSAWIFQEGGLWRVGNGKNIRA*EDKWVPHGGPLVYRNDVAESLGV-----VHVSDLMVT 179
+ G +GNG+N D W+ P ESL + + VS L+
Sbjct: 642 YGRELLVSGLKKIIGNGENTYVWMDNWIFDDKP-----RRPESLQIMVDIQLKVSQLIDP 696
Query: 180 NGGCWDRNKVEFLCWPPTARAILSIPLPLQQRDDCFFWPETRDGCYSTRTGYSFI*KKFS 239
W+ N + L +P I+ P+ R D F W T G Y+ ++ Y ++
Sbjct: 697 FSRNWNLNMLRDL-FPWKEIQIICQQRPMASRQDSFCWFGTNHGLYTVKSEYDLCSRQVH 755
Query: 240 EGEASSSSARVMPPALWMKLWKADAVPQCCETAWRACLDILPVRSILHRRGVVGNPCCPR 299
+ + + L+ K+W ++ P+ W+ + V L RGV+ C
Sbjct: 756 KQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGCSM 815
Query: 300 CSEVEETVHHALFSCPLVRMIWFASPL---NLRFDEE---------GSVHDFFLSFLATA 347
C E ET++H LF CPL R +W +P+ N F + G+ H+ LS
Sbjct: 816 CPEKNETLNHILFQCPLARQVWALTPMQSPNHGFGDSIFTNVNHVIGNCHNTELS----- 870
Query: 348 DTNIAGIFLAVLYSVWQARNELLFKWKDSSIDQLLQRASS-----LRPSRVLLDDGPRAV 402
++ + +++ +W+ RN+ LF+ S ++ +A L+ ++ P
Sbjct: 871 -PHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHELICSKEP--- 926
Query: 403 QVLPSSWSRPLSGVCKMNIDASVTSSKE-AGAGMVMRNNHGEVLAAATTELGPVLSPVLA 461
+W PL K NI + + + AG V+RN G VL + + S A
Sbjct: 927 -TKDLTWIPPLMNELKCNIGIAWSKKHQMAGVSWVVRNWKGRVLLHSRCSFSQISSHFDA 985
Query: 462 EALGMRWALRLATKLGFRRI 481
+ G +A+ + F R+
Sbjct: 986 KIKGWNYAVESMDQFKFDRV 1005
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.326 0.139 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 975,498,663
Number of Sequences: 2790947
Number of extensions: 40732769
Number of successful extensions: 90684
Number of sequences better than 10.0: 415
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 89857
Number of HSP's gapped (non-prelim): 617
length of query: 565
length of database: 848,049,833
effective HSP length: 133
effective length of query: 432
effective length of database: 476,853,882
effective search space: 206000877024
effective search space used: 206000877024
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0118c.1