BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0113.5
         (992 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip...   224  1e-56
UniRef100_Q9XE43 Putative non-LTR retrolelement reverse transcri...   217  2e-54
UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcrip...   214  1e-53
UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]               213  3e-53
UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa]              213  3e-53
UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]       210  1e-52
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip...   203  2e-50
UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]        202  3e-50
UniRef100_Q5W742 Hypothetical protein OJ1005_D04.4 [Oryza sativa]     189  4e-46
UniRef100_Q7X970 BZIP-like protein [Oryza sativa]                     187  2e-45
UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis tha...   183  2e-44
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]              183  2e-44
UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]                      182  3e-44
UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]                       182  3e-44
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip...   182  6e-44
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip...   181  1e-43
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip...   177  1e-42
UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabi...   174  9e-42
UniRef100_O23410 STRONG homology to reverse transcriptase [Arabi...   171  8e-41
UniRef100_Q9FJA4 Non-LTR retroelement reverse transcriptase-like...   171  8e-41

>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
          Length = 1382

 Score =  224 bits (571), Expect = 1e-56
 Identities = 141/479 (29%), Positives = 233/479 (48%), Gaps = 23/479 (4%)

Query: 510 LFSWNIICAGAQGVPLL--LKDIVMRHRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVE 567
           L +W   C G      +  L+ +V   R S + L E +++      +M +LGF   F V 
Sbjct: 6   LVTWGRNCRGLGSAATVGELRWLVKSLRPSLVFLSETKMRDKQARNLMWSLGFSGSFAVS 65

Query: 568 AEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLW 627
            EG SGG+ + W+  +  V +   +  F+ + +  +  +P + ++FVYG P   +R+F W
Sbjct: 66  CEGLSGGLALFWTTAY-TVSLRGFNSHFIDVLVSTEE-LPPWRISFVYGEPKRELRHFFW 123

Query: 628 QELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGP 687
             L+ +  Q   PW+  GDFN  L   + +G    +   M  FR CLD C L DLGF GP
Sbjct: 124 NLLRRLHDQWRGPWLCCGDFNEVLCLDEHLGMRERSEPHMQHFRSCLDDCGLIDLGFVGP 183

Query: 688 PFTWKGR-----GVKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDS 742
            FTW  +       K R+D A+ N  +   F +  V ++     DH  I I L   +   
Sbjct: 184 KFTWSNKQDANSNSKVRLDRAVANGEFSRYFEDCLVENVITTSSDHYAISIDLSRRNHGQ 243

Query: 743 SQRP----FRFLAAWLTHEDFPRLVKSSWDSHHDSWI------PASEAFCEEAASWNRDV 792
            + P    FRF AAWL  ED+  +V++SW       +         +        W++  
Sbjct: 244 RRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRGVWSVLQQVAVSLKDWSKAS 303

Query: 793 FGEIGRTKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNW 852
           FG + R   ++ R+L+ +    +   +  + + +K + ++   +  +EE++ RQ+SRV+W
Sbjct: 304 FGSVRRKILKMERKLKSLR---QSPVNDVVIQEEKLIEQQLCELFEKEEIMARQRSRVDW 360

Query: 853 LNHGDRNTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGE 912
           L  GDRNT FFH      R+ N+I+ L  D G     Q+ ++ MA   ++NL++S     
Sbjct: 361 LREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIKRMAEVFYENLFSSEPCDS 420

Query: 913 PYHVRNAFPSLPRETLDEIMG-PLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVI 970
              V +A P+   + ++  +G      EI+ A+F MG+ KAPGPD    LF+Q+ W ++
Sbjct: 421 MEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPALFYQTHWGIL 479


>UniRef100_Q9XE43 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 855

 Score =  217 bits (552), Expect = 2e-54
 Identities = 132/367 (35%), Positives = 187/367 (49%), Gaps = 47/367 (12%)

Query: 566 VEAEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNF 625
           V+A G SGGIW+LW    GDV I+ S  QF+H ++   N +    +  VY +P+ S R+ 
Sbjct: 508 VDARGQSGGIWLLWKSEVGDVSIVESAEQFIHAKVG--NGLAAIHLLAVYAAPSVSRRSG 565

Query: 626 LWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFK 685
           LW  L  I   V +P +                                    + D+GFK
Sbjct: 566 LWSLLSRIVQSVDEPII------------------------------------VGDMGFK 589

Query: 686 GPPFTWKGRG------VKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPE- 738
           G  FTWK RG      V +R+D  L   +    + EA+V HLP    DH PI IQL PE 
Sbjct: 590 GNKFTWK-RGRVESTFVAKRLDRVLCRPQTRLKWQEASVTHLPFFASDHAPIYIQLEPEV 648

Query: 739 HMDSSQRPFRFLAAWLTHEDFPRLVKSSWDSHHDSWIPASEAFCEEAASWNRDVFGEIGR 798
             +  +RPFRF AAWLTH  F  L+++SW++  ++ + A  A   +   WNR+VFG++ R
Sbjct: 649 RSNPLRRPFRFEAAWLTHSGFKDLLQASWNTEGETPV-ALAALKSKLKKWNREVFGDVNR 707

Query: 799 TKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDR 858
            K  LM  ++ +   L ++ +  L   ++ L KE+  VL +EE+LW QKSR  W+  GDR
Sbjct: 708 RKESLMNEIKVVQELLEINQTDNLLSKEEELIKEFDVVLEQEEVLWFQKSREKWVELGDR 767

Query: 859 NTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPYHVRN 918
           NT +FHT T+V R+RN+IE L  D G  ++ Q +L  MAV  +  LY+     E      
Sbjct: 768 NTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYSRLYSMEDVDEVVERLP 827

Query: 919 AFPSLPR 925
             P  PR
Sbjct: 828 TNPPNPR 834


>UniRef100_Q9SIS9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1715

 Score =  214 bits (544), Expect = 1e-53
 Identities = 152/520 (29%), Positives = 246/520 (47%), Gaps = 28/520 (5%)

Query: 467 SNAPGDMGGRTFRERDRSLSPRKHRSS*RAFPSISTLFMMLYNLFSWNIICAGAQGVPLL 526
           +NA GD+ G       + L  RKH    R     +T  M    +  WN  C G  G PL 
Sbjct: 326 ANATGDILGPV-ELLSQELRKRKHNFESRGGAGTTTSPM---RVGFWN--CQGL-GQPLT 378

Query: 527 LKDIVMRHRV---SCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHW 583
           ++ +    RV     L L E + Q N    +   +GFED  ++   G SGG+ V W KH 
Sbjct: 379 VRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCIISPRGLSGGLVVYWKKHL 438

Query: 584 GDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVT 643
             ++++S   + V L +  KN   NF ++ +YG P  S R+ LW++LQ +++  + PW+ 
Sbjct: 439 S-IQVISHDVRLVDLYVEYKNF--NFYLSCIYGHPIPSERHHLWEKLQRVSAHRSGPWMM 495

Query: 644 VGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTWKGRGVKERIDWA 703
            GDFN  L  ++K GG   ++ S+  F + ++ C++ DL  KG P++W G+   E I+  
Sbjct: 496 CGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGNPYSWVGKRQNETIESC 555

Query: 704 LG----NARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWLTHEDF 759
           L     N+ W +SFP      LP    DH P++I +  E + + +  FR+       EDF
Sbjct: 556 LDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIA-EEVCTKRGQFRYDRRHFQFEDF 614

Query: 760 PRLVKSSWD----SHHDSWIPASEAFCEEAASWNRDVFGEIGRTKRRLMRRLEGINNHLR 815
              V+  W+      H  +        +E A W R            L  R++       
Sbjct: 615 VDSVQRGWNRGRSDSHGGYYEKLHCCRQELAKWKRRTKTNTAEKIETLKYRVDAAERDHT 674

Query: 816 MSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNK 875
           + H   L +L++ L + Y+     EEL W  KSR  W+  GDRNT FF+ +T + + RN+
Sbjct: 675 LPHQTIL-RLRQDLNQAYRD----EELYWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNR 729

Query: 876 IEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPYHVRNAF-PSLPRETLDEIMGP 934
           I+A+ +  G      D +  +A   F +L+T+    +   + +   P +  +   E++  
Sbjct: 730 IKAITDAQGIENFRDDTIGKVAENYFADLFTTTQTSDWEEIISGIAPKVTEQMNHELLQS 789

Query: 935 LEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSV 974
           +   E+R AVF++GA +APG D     F+   W +IG  V
Sbjct: 790 VTDQEVRDAVFAIGADRAPGFDGFTAAFYHHLWDLIGNDV 829


>UniRef100_Q7XS38 OSJNBa0081G05.2 protein [Oryza sativa]
          Length = 1711

 Score =  213 bits (541), Expect = 3e-53
 Identities = 130/449 (28%), Positives = 210/449 (45%), Gaps = 23/449 (5%)

Query: 541  LYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRI 600
            L E R     + ++ + L F  F  V +EG SGG+ + W +    V++   +++++   +
Sbjct: 581  LCETRQSVEKMSRLRRKLAFRGFVGVSSEGMSGGLALYWDESVS-VDVKDINKRYIDAYV 639

Query: 601  HPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGG 660
               ++ P + +TFVYG P    R+ +W  L+ I      PW+ +GDFN  L   +     
Sbjct: 640  RLSSDEPQWHITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKN 699

Query: 661  PPNLLSMAKFRDCLDACSLSDLGFKGPPFTWKG-----RGVKERIDWALGNARWISSFPE 715
            P     M  FRD L  C L DLGFKG P T+       R VK R+D A+ + +W   FPE
Sbjct: 700  PRCETQMQNFRDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPE 759

Query: 716  ATVLHLPKLKYDHKPILIQ-LGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSW-----DS 769
            A V HL     DH PIL++ +  +     Q+   +   W    +  ++++ +W      +
Sbjct: 760  AQVSHLVSPCSDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKT 819

Query: 770  HHDSWIPASEAFCEEAASWNRDVFGEIGRTKRRLMRRLEGI--NNHLRMSHSPYLEKLQK 827
                   A         SW +     +GR   +  ++LE +  +N  R S     + + +
Sbjct: 820  DLGDINIALGRVMSALRSWGKTKVKNVGRELEKARKKLEDLIASNAARSSIRQATDHMNE 879

Query: 828  RLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVGELI 887
             L+        REE+LW Q+SRVNWL  GDRNT FFH+  +   K+NKI  L ++ G + 
Sbjct: 880  MLY--------REEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIH 931

Query: 888  TDQDQLRSMAVTSFQNLYTSPGPGEPYHVRNAFPSLPRETLDE-IMGPLEAAEIRVAVFS 946
            +    L +MA   FQ +Y +     P  V   F     + ++E +    +  EI  A+F 
Sbjct: 932  SMTSVLETMATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQ 991

Query: 947  MGAMKAPGPDDLNPLFFQSQWQVIGPSVV 975
            +G +K+PGPD     F+Q  W  +   ++
Sbjct: 992  IGPLKSPGPDGFPARFYQRNWGTLKSDII 1020


>UniRef100_Q7XME3 OSJNBa0061G20.16 protein [Oryza sativa]
          Length = 1285

 Score =  213 bits (541), Expect = 3e-53
 Identities = 130/449 (28%), Positives = 210/449 (45%), Gaps = 23/449 (5%)

Query: 541  LYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRI 600
            L E R     + ++ + L F  F  V +EG SGG+ + W +    V++   +++++   +
Sbjct: 581  LCETRQSVEKMSRLRRKLAFRGFVGVSSEGMSGGLALYWDESVS-VDVKDINKRYIDAYV 639

Query: 601  HPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGG 660
               ++ P + +TFVYG P    R+ +W  L+ I      PW+ +GDFN  L   +     
Sbjct: 640  RLSSDEPQWHITFVYGEPRVENRHRMWSLLRTIRQSSALPWMVIGDFNETLWQFEHFSKN 699

Query: 661  PPNLLSMAKFRDCLDACSLSDLGFKGPPFTWKG-----RGVKERIDWALGNARWISSFPE 715
            P     M  FRD L  C L DLGFKG P T+       R VK R+D A+ + +W   FPE
Sbjct: 700  PRCETQMQNFRDALYDCDLQDLGFKGVPHTYDNRRDGWRNVKVRLDRAVADDKWRDLFPE 759

Query: 716  ATVLHLPKLKYDHKPILIQ-LGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSW-----DS 769
            A V HL     DH PIL++ +  +     Q+   +   W    +  ++++ +W      +
Sbjct: 760  AQVSHLVSPCSDHSPILLEFIVKDTTRPRQKCLHYEIVWEREPESVQVIEEAWINAGVKT 819

Query: 770  HHDSWIPASEAFCEEAASWNRDVFGEIGRTKRRLMRRLEGI--NNHLRMSHSPYLEKLQK 827
                   A         SW +     +GR   +  ++LE +  +N  R S     + + +
Sbjct: 820  DLGDINIALGRVMSALRSWGKTKVKNVGRELEKARKKLEDLIASNAARSSIRQATDHMNE 879

Query: 828  RLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVGELI 887
             L+        REE+LW Q+SRVNWL  GDRNT FFH+  +   K+NKI  L ++ G + 
Sbjct: 880  MLY--------REEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIH 931

Query: 888  TDQDQLRSMAVTSFQNLYTSPGPGEPYHVRNAFPSLPRETLDE-IMGPLEAAEIRVAVFS 946
            +    L +MA   FQ +Y +     P  V   F     + ++E +    +  EI  A+F 
Sbjct: 932  SMTSVLETMATEYFQEVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQ 991

Query: 947  MGAMKAPGPDDLNPLFFQSQWQVIGPSVV 975
            +G +K+PGPD     F+Q  W  +   ++
Sbjct: 992  IGPLKSPGPDGFPARFYQRNWGTLKSDII 1020


>UniRef100_Q75M12 Hypothetical protein P0676G05.2 [Oryza sativa]
          Length = 1936

 Score =  210 bits (535), Expect = 1e-52
 Identities = 132/478 (27%), Positives = 219/478 (45%), Gaps = 23/478 (4%)

Query: 512  SWNIICAGAQGVPLLLKDIVMRHRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGF 571
            +WN    G       L+ ++ +     + L E R     + ++ + L F  F  V +EG 
Sbjct: 640  AWNCRGLGNTATVQDLRALIQKAGSQLVFLCETRQSVEKMSRLRRKLAFRGFVGVSSEGK 699

Query: 572  SGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQ 631
            SGG+ + W +    V++   +++++   +    + P + +TFVYG P    R+ +W  L+
Sbjct: 700  SGGLALYWDESVS-VDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRMWSLLR 758

Query: 632  NIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTW 691
             I      PW+ +GDFN  L   +     P     M  FRD L  C L DLGFKG P T+
Sbjct: 759  TIRQSSALPWMVIGDFNETLWQFEHFSKNPRCETQMQNFRDALYDCDLQDLGFKGVPHTY 818

Query: 692  KG-----RGVKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQ-LGPEHMDSSQR 745
                   R VK R+D A+ + +W   FPEA V HL     DH PIL++ +  +     Q+
Sbjct: 819  DNRRDGWRNVKVRLDRAVADDKWRDLFPEAQVSHLVSPCSDHSPILLEFIVKDTTRPRQK 878

Query: 746  PFRFLAAWLTHEDFPRLVKSSW-----DSHHDSWIPASEAFCEEAASWNRDVFGEIGRTK 800
               +   W    +  ++++ +W      +       A         SW++     +G+  
Sbjct: 879  CLHYEIVWEREPESVQVIEEAWINAGVKTDLGDINIALGRVMSALRSWSKTKVKNVGKEL 938

Query: 801  RRLMRRLEGI--NNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDR 858
             +  ++LE +  +N  R S     + + + L+        REE+LW Q+SRVNWL  GDR
Sbjct: 939  EKARKKLEDLIASNAARSSIRQATDHMNEMLY--------REEMLWLQRSRVNWLKEGDR 990

Query: 859  NTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPYHVRN 918
            NT FFH+  +   K+NKI  L ++ G + +    L +MA   FQ +Y +     P  V  
Sbjct: 991  NTRFFHSRAVWRAKKNKISKLRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTR 1050

Query: 919  AFPSLPRETLDE-IMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSVV 975
             F     + ++E +    +  EI  A+F +G +K+P PD     F+Q  W  +   ++
Sbjct: 1051 LFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDII 1108


>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score =  203 bits (517), Expect = 2e-50
 Identities = 131/484 (27%), Positives = 228/484 (47%), Gaps = 22/484 (4%)

Query: 510 LFSWNIICAGAQGVPLL--LKDIVMRHRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVE 567
           + SWN  C G    P +  L++I   +    + L E + + N L  ++  LGF D   VE
Sbjct: 3   ILSWN--CQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60

Query: 568 AEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLW 627
             G SGG+ ++W K    +++L S ++ +   +  ++    F +T +YG P  + R  LW
Sbjct: 61  PIGKSGGLALMW-KDSVQIKVLQSDKRLIDALLIWQDK--EFYLTCIYGEPVQAERGELW 117

Query: 628 QELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGP 687
           + L  +    + PW+  GDFN  +  S+K+GG      S  +FR  L++C L ++   G 
Sbjct: 118 ERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGY 177

Query: 688 PFTWKGRGVKE----RIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSS 743
            F+W G    E    R+D  + N  W+  FP+A   +L K+  DH P++  L  ++    
Sbjct: 178 QFSWYGNRNDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLINNLVGDNW-RK 236

Query: 744 QRPFRFLAAWLTHEDFPRLVKSSWDSHH---DSWIPASEAFCE-EAASWNRDVFGEIGRT 799
              F++   W+  E F  L+ + W       ++ +    A C  E + W R         
Sbjct: 237 WAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKWKRVSKPSSAVR 296

Query: 800 KRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRN 859
            + L  +L+     +       L +L+K L +EY      EE  W++KSR+ W+ +GDRN
Sbjct: 297 IQELQFKLDAATKQIPFDRRE-LARLKKELSQEYNN----EEQFWQEKSRIMWMRNGDRN 351

Query: 860 THFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPY-HVRN 918
           T +FH  T   R +N+I+ L ++ G   T  + L  +A   F+ L+ S   G     + N
Sbjct: 352 TKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELEN 411

Query: 919 AFPSLPRETLDEIMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSVVKLA 978
             P +  +  + ++ P+   E++ A FS+   K PGPD +N   +Q  W+ +G  + ++ 
Sbjct: 412 LTPLVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMV 471

Query: 979 MTVY 982
              +
Sbjct: 472 QAFF 475


>UniRef100_Q94GP2 Putative reverse transcriptase [Oryza sativa]
          Length = 1833

 Score =  202 bits (515), Expect = 3e-50
 Identities = 123/453 (27%), Positives = 213/453 (46%), Gaps = 20/453 (4%)

Query: 534 HRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHWGDVEILSSHR 593
           HR   + L E R    +   +   +G    F V   G  GG+ + W +   +V + S + 
Sbjct: 10  HRPKIVFLAETR---QDQYMVQNRIGLRRCFTVNGVGKGGGLALFWDESM-NVVLKSYNS 65

Query: 594 QFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQA 653
           + + + I  + +   +  TFVYG P A  R+ +W  L+ I S    PW+ +GDFN  +  
Sbjct: 66  RHIDVLI-TELDCCTWRATFVYGEPRAQDRHLMWSLLRRIRSNSGDPWLMIGDFNEAMWQ 124

Query: 654 SDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTW-----KGRGVKERIDWALGNAR 708
           ++       +   M  FR+ L  C L D+GF+G P+T+     +GR VK R+D  + +  
Sbjct: 125 TEHKSHRKRSESQMRDFREVLSECDLHDIGFQGAPWTFCNMQREGRNVKVRLDRGVASPA 184

Query: 709 WISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSWD 768
           W S FP+A + HL     DH P+L++     +    +  R+   W      P +++ +W 
Sbjct: 185 WSSRFPQAVITHLTTPSSDHAPLLLEREETTLARPMKIMRYEEVWERESSLPEVIQEAWT 244

Query: 769 SHHDSWIPAS-----EAFCEEAASWNRDVFGEIGRTKRRLMRRLEGINNHLRMSHSPYLE 823
              D+          +    +  SW++D  G + +  + L  +L  + N   +     + 
Sbjct: 245 MGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDNEVH 304

Query: 824 KLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDV 883
            ++K L    + +L REE+ W+Q+SR+ WL  GD NT +FH       K+NKI+ L  + 
Sbjct: 305 SVKKEL----EEMLHREEIWWKQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKND 360

Query: 884 GELITDQDQLRSMAVTSFQNLYTSPGPGEPYHVRNAFPSLPRETLD-EIMGPLEAAEIRV 942
           G    ++ +++ +  + FQ LYT      P ++ N F     E ++ +++ P    EI  
Sbjct: 361 GSTTMNKKEMKEINRSFFQQLYTKDDNLNPVNLLNMFHEKISEQMNADLIKPFTNEEISD 420

Query: 943 AVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSVV 975
           A+F +G +KAPGPD     F Q  W ++   V+
Sbjct: 421 ALFQIGPLKAPGPDGFPARFLQRNWGLLKGEVI 453


>UniRef100_Q5W742 Hypothetical protein OJ1005_D04.4 [Oryza sativa]
          Length = 796

 Score =  189 bits (480), Expect = 4e-46
 Identities = 118/414 (28%), Positives = 201/414 (48%), Gaps = 18/414 (4%)

Query: 566 VEAEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNF 625
           +   G  GGI + W +    VE+ S + + + + I  +++   +  TFVYG P +  R  
Sbjct: 387 MNGRGKGGGIALFWDESI-KVELKSYNVRHIDVLI-TESDGERWRGTFVYGEPRSQDRLK 444

Query: 626 LWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFK 685
           +W  L+ I S    PW+ +GDFN  +  S+       +   M  FR+ L  C L DLGF 
Sbjct: 445 MWTLLRRIKSNAALPWLMIGDFNEAMWQSEHWSRVRRSERQMKDFREALADCDLHDLGFH 504

Query: 686 GPPFTWKGR-----GVKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQ-LGPEH 739
           G P+T+         V+ R+D A+ +  W+  F +A++ HL     DH P+L++ L  E 
Sbjct: 505 GVPWTYDNNQRGANNVRVRLDRAVASPAWLGRFRQASITHLVTPSSDHVPLLLERLEEEL 564

Query: 740 MDSSQRPFRFLAAWLTHEDFPRLVKSSWDSHH-----DSWIPASEAFCEEAASWNRDVFG 794
           + +S +  R+ A W   E F  +V+ +W           +        +E   W++   G
Sbjct: 565 VHNSVKISRYEAIWEREESFDSVVQQAWGEGEVVRNLGDFKTKMAYTMDELVKWSKSKIG 624

Query: 795 EIGRTKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLN 854
            I +      ++L  +     +   P ++K++++L    Q +L REE+ WRQ+S++ WL 
Sbjct: 625 NIKKGIESRRKKLGELRMAGMLDSEPEVKKIKEQL----QEMLRREEIWWRQRSQITWLK 680

Query: 855 HGDRNTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPY 914
            GD+NT +FH       ++NK++ L    G L++++ ++  +A   FQNLY      +P 
Sbjct: 681 EGDKNTKYFHLKASWRARKNKVKKLRRPNGSLVSNEKEMGEVARDFFQNLYMKDENLDPT 740

Query: 915 HVRNAFPS-LPRETLDEIMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQW 967
            + N F + +  E  + +M P    EI   +F +G +KAPG D     FFQ  W
Sbjct: 741 ELFNLFQTKITAEMNESLMKPFSEEEIGDVLFQIGHLKAPGSDGFPAHFFQRNW 794


>UniRef100_Q7X970 BZIP-like protein [Oryza sativa]
          Length = 2367

 Score =  187 bits (474), Expect = 2e-45
 Identities = 123/439 (28%), Positives = 196/439 (44%), Gaps = 23/439 (5%)

Query: 551  LPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNVPNFL 610
            + ++   LG   F  V +EG SGG+ + W +    V++   +++++   +      P + 
Sbjct: 773  MSRLRGRLGLRGFTGVSSEGMSGGLALYWDESVS-VDVKDINKRYIDAYVQLSPEEPQWH 831

Query: 611  VTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLSMAKF 670
            VTFVYG P    R+ +W  L+ I    + PW  +GDFN  +   +     P     M  F
Sbjct: 832  VTFVYGEPRVENRHRMWSLLRTIHQSSSLPWAVIGDFNETMWQFEHFSRTPRGEPQMQDF 891

Query: 671  RDCLDACSLSDLGFKGPPFTWKG-----RGVKERIDWALGNARWISSFPEATVLHLPKLK 725
            RD L  C L DLGFKG P T+       R VK R+D  + + +W   +  A V+HL    
Sbjct: 892  RDVLQDCELHDLGFKGVPHTYDNKREGWRNVKVRLDRVVADDKWRDIYSTAQVVHLVSPC 951

Query: 726  YDHKPILIQL---GPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSW-----DSHHDSWIPA 777
             DH PIL+ L    P  +   Q+   +   W    +  ++++ +W      +       A
Sbjct: 952  SDHCPILLNLVVKDPHQL--RQKCLHYEIVWEREPEATQVIEEAWVVAGEKADLGDINKA 1009

Query: 778  SEAFCEEAASWNRDVFGEIGRTKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQTVL 837
                     SW+R     +GR   +  ++L        +  S     + +        +L
Sbjct: 1010 LAKVMTALRSWSRAKVKNVGRELEKARKKL------AELIESNADRTVIRNATDHMNELL 1063

Query: 838  IREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMA 897
             REE+LW Q+SRVNWL   DRNT FFH+  +   K+NKI  L +    + +   +L SMA
Sbjct: 1064 YREEMLWLQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMA 1123

Query: 898  VTSFQNLYTSPGPGEPYHVRNAFPSLPRETLDE-IMGPLEAAEIRVAVFSMGAMKAPGPD 956
               FQ++YT+     P  V         + ++E +       EI  A+F +G +K+PGPD
Sbjct: 1124 TEYFQDVYTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPD 1183

Query: 957  DLNPLFFQSQWQVIGPSVV 975
                 F+Q  W  I   ++
Sbjct: 1184 GFPARFYQRNWGTIKADII 1202


>UniRef100_Q9SN65 Hypothetical protein F25I24.40 [Arabidopsis thaliana]
          Length = 1294

 Score =  183 bits (465), Expect = 2e-44
 Identities = 130/467 (27%), Positives = 209/467 (43%), Gaps = 20/467 (4%)

Query: 522 GVPLL---LKDIVMRHRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVL 578
           GVPL    L ++    +   L L E   +   +  +   LGF +      +G SGG+ +L
Sbjct: 373 GVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALL 432

Query: 579 WSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVT 638
           W      V + + ++   H+ +H   N  NF ++ VYG P  S R+ LW   +N++    
Sbjct: 433 WKD---SVRLSNLYQDDRHIDVHISINNINFYLSRVYGHPCQSERHSLWTHFENLSKTRN 489

Query: 639 KPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTWKG----R 694
            PW+ +GDFN  L  ++K+GG   +  +   FR+ +  C L D+   G  F+W G     
Sbjct: 490 DPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSH 549

Query: 695 GVKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWL 754
            VK  +D A  N+     FP A +  L     DHKP+ + L  +      RPFRF    L
Sbjct: 550 TVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSL-EKTETRKMRPFRFDKRLL 608

Query: 755 THEDFPRLVKSSWD---SHHDSWIPASEAFCEEAASWNRDVFGEIGRTK-RRLMRRLEGI 810
               F   VK+ W+   +     +P     C +A +  +       R +  +L   L+  
Sbjct: 609 EVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKA 668

Query: 811 NNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVH 870
            + +  +    +  +Q+ L   Y+     EE  W+QKSR  W+  GDRNT FFH  T   
Sbjct: 669 MSSVNRTERRTISHIQRELTVAYRD----EERYWQQKSRNQWMKEGDRNTEFFHACTKTR 724

Query: 871 RKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPG-PGEPYHVRNAFPSLPRETLD 929
              N++  + ++ G +     ++   A   F  +Y S G P          P +  +  D
Sbjct: 725 FSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQIND 784

Query: 930 EIMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSVVK 976
           ++   L   EI  A+  +G  KAPGPD L   F++S W+++GP V+K
Sbjct: 785 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIK 831


>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
          Length = 1662

 Score =  183 bits (465), Expect = 2e-44
 Identities = 130/467 (27%), Positives = 209/467 (43%), Gaps = 20/467 (4%)

Query: 522 GVPLL---LKDIVMRHRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVL 578
           GVPL    L ++    +   L L E   +   +  +   LGF +      +G SGG+ +L
Sbjct: 393 GVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGLALL 452

Query: 579 WSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVT 638
           W      V + + ++   H+ +H   N  NF ++ VYG P  S R+ LW   +N++    
Sbjct: 453 WKD---SVRLSNLYQDDRHIDVHISINNINFYLSRVYGHPCQSERHSLWTHFENLSKTRN 509

Query: 639 KPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTWKG----R 694
            PW+ +GDFN  L  ++K+GG   +  +   FR+ +  C L D+   G  F+W G     
Sbjct: 510 DPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGERHSH 569

Query: 695 GVKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWL 754
            VK  +D A  N+     FP A +  L     DHKP+ + L  +      RPFRF    L
Sbjct: 570 TVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFLSL-EKTETRKMRPFRFDKRLL 628

Query: 755 THEDFPRLVKSSWD---SHHDSWIPASEAFCEEAASWNRDVFGEIGRTK-RRLMRRLEGI 810
               F   VK+ W+   +     +P     C +A +  +       R +  +L   L+  
Sbjct: 629 EVPHFKTYVKAGWNKAINGQRKHLPDQVRTCRQAMAKLKHKSNLNSRIRINQLQAALDKA 688

Query: 811 NNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVH 870
            + +  +    +  +Q+ L   Y+     EE  W+QKSR  W+  GDRNT FFH  T   
Sbjct: 689 MSSVNRTERRTISHIQRELTVAYRD----EERYWQQKSRNQWMKEGDRNTEFFHACTKTR 744

Query: 871 RKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPG-PGEPYHVRNAFPSLPRETLD 929
              N++  + ++ G +     ++   A   F  +Y S G P          P +  +  D
Sbjct: 745 FSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVYESNGRPVSIIDFAGFKPIVTEQIND 804

Query: 930 EIMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSVVK 976
           ++   L   EI  A+  +G  KAPGPD L   F++S W+++GP V+K
Sbjct: 805 DLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIK 851


>UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score =  182 bits (463), Expect = 3e-44
 Identities = 132/451 (29%), Positives = 198/451 (43%), Gaps = 50/451 (11%)

Query: 549 NNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKH------WGDVEILSSHRQFVHLRIHP 602
           ++L  I   L ++  + VE  G  GG+ +LW         + D  ++ +  QF       
Sbjct: 5   DDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQVQF------- 57

Query: 603 KNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPP 662
                NF V+ VYG P+ S R+  W+ +  I       W   GDFN  L   +K GG   
Sbjct: 58  --GAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRR 115

Query: 663 NLLSMAKFRDCLDACSLSDLGFKGPPFTWKGR----GVKERIDWALGNARWISSFPEATV 718
           + L    F + +  C L ++   G  FTW GR     ++ R+D A GN  W   FP +  
Sbjct: 116 SDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWIQCRLDRAFGNKEWFCFFPVSNQ 175

Query: 719 LHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSWD-SHHDSWIPA 777
             L     DH+P+LI+L     DS +  FRF   +L  ED    +  +W    H + I  
Sbjct: 176 TFLDFRGSDHRPVLIKL-MSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISV 234

Query: 778 SE---AFCEEAASWNRDVFGEIGRTKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQ 834
           ++   A  +  +SW           K+  +  L+ IN          LEK Q  +W  +Q
Sbjct: 235 ADRLRACRKSLSSWK----------KQNNLNSLDKIN-----QLEAALEKEQSLVWPIFQ 279

Query: 835 TVLI----------REELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVG 884
            V +           EE  W+QKSR  WL  G+RN+ +FH     +R+R +IE L +  G
Sbjct: 280 RVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNG 339

Query: 885 ELITDQDQLRSMAVTSFQNLYTSPGP-GEPYHVRNAFPSLPRETLDEIMGPLEAAEIRVA 943
            + T +     +A   F NL+ S  P G         P +     + ++G + A EI+ A
Sbjct: 340 NMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEA 399

Query: 944 VFSMGAMKAPGPDDLNPLFFQSQWQVIGPSV 974
           VFS+    APGPD ++ LFFQ  W  +G  V
Sbjct: 400 VFSIKPASAPGPDGMSALFFQHYWSTVGNQV 430


>UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]
          Length = 1254

 Score =  182 bits (463), Expect = 3e-44
 Identities = 132/451 (29%), Positives = 198/451 (43%), Gaps = 50/451 (11%)

Query: 549 NNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKH------WGDVEILSSHRQFVHLRIHP 602
           ++L  I   L ++  + VE  G  GG+ +LW         + D  ++ +  QF       
Sbjct: 8   DDLVDIQSWLEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQVQF------- 60

Query: 603 KNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPP 662
                NF V+ VYG P+ S R+  W+ +  I       W   GDFN  L   +K GG   
Sbjct: 61  --GAVNFCVSCVYGDPDRSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRR 118

Query: 663 NLLSMAKFRDCLDACSLSDLGFKGPPFTWKGR----GVKERIDWALGNARWISSFPEATV 718
           + L    F + +  C L ++   G  FTW GR     ++ R+D A GN  W   FP +  
Sbjct: 119 SDLDCKAFNEMIKGCDLVEMPAHGNGFTWAGRRGDHWIQCRLDRAFGNKEWFCFFPVSNQ 178

Query: 719 LHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSWD-SHHDSWIPA 777
             L     DH+P+LI+L     DS +  FRF   +L  ED    +  +W    H + I  
Sbjct: 179 TFLDFRGSDHRPVLIKL-MSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNISV 237

Query: 778 SE---AFCEEAASWNRDVFGEIGRTKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQ 834
           ++   A  +  +SW           K+  +  L+ IN          LEK Q  +W  +Q
Sbjct: 238 ADRLRACRKSLSSWK----------KQNNLNSLDKIN-----QLEAALEKEQSLVWPIFQ 282

Query: 835 TVLI----------REELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVG 884
            V +           EE  W+QKSR  WL  G+RN+ +FH     +R+R +IE L +  G
Sbjct: 283 RVSVLKKDLAKAYREEEAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNG 342

Query: 885 ELITDQDQLRSMAVTSFQNLYTSPGP-GEPYHVRNAFPSLPRETLDEIMGPLEAAEIRVA 943
            + T +     +A   F NL+ S  P G         P +     + ++G + A EI+ A
Sbjct: 343 NMQTSEAAKGEVAAAYFGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEA 402

Query: 944 VFSMGAMKAPGPDDLNPLFFQSQWQVIGPSV 974
           VFS+    APGPD ++ LFFQ  W  +G  V
Sbjct: 403 VFSIKPASAPGPDGMSALFFQHYWSTVGNQV 433


>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1344

 Score =  182 bits (461), Expect = 6e-44
 Identities = 130/448 (29%), Positives = 207/448 (46%), Gaps = 22/448 (4%)

Query: 534 HRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHWGDVEILSSHR 593
           H    L L E +   + + K+   LG++    VE EG SGG+ + W  H  ++E L + +
Sbjct: 5   HFPDILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHL-EIEFLYADK 63

Query: 594 QFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQA 653
             + L++  +N V  + ++ VYG P   +R  LW+ L +I  +  + W  +GDFN     
Sbjct: 64  NLMDLQVSSRNKV--WFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSN 121

Query: 654 SDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTWKG----RGVKERIDWALGNARW 709
            +K+GG   +  S   F   L  CS+ +LG  G  FTW G    + V+ ++D   GN  W
Sbjct: 122 DEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGNRNDQWVQCKLDRCFGNPAW 181

Query: 710 ISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSWDS 769
            S FP A    L K   DH+P+L++   ++ +  +  FR+            ++  SW+S
Sbjct: 182 FSIFPNAHQWFLEKFGSDHRPVLVKFTNDN-ELFRGQFRYDKRLDDDPYCIEVIHRSWNS 240

Query: 770 H-----HDSWIPASEAFCEEAAS-WNRDVFGEIGRTKRRLMRRLEGINNHLRMSHSPYLE 823
                 H S+    E  C  A S W            +RL + L+     +++   P +E
Sbjct: 241 AMSQGTHSSFFSLIE--CRRAISVWKHSSDTNAQSRIKRLRKDLDA-EKSIQIPCWPRIE 297

Query: 824 KLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDV 883
            ++ +L   Y      EEL WRQKSR  WL  GD+NT FFH T    R +N++  L ++ 
Sbjct: 298 YIKDQLSLAYGD----EELFWRQKSRQKWLAGGDKNTGFFHATVHSERLKNELSFLLDEN 353

Query: 884 GELITDQDQLRSMAVTSFQNLYTSPG-PGEPYHVRNAFPSLPRETLDEIMGPLEAAEIRV 942
            +  T       +A + F+NL+TS        H+      +  E    ++  +   E+  
Sbjct: 354 DQEFTRNSDKGKIASSFFENLFTSTYILTHNNHLEGLQAKVTSEMNHNLIQEVTELEVYN 413

Query: 943 AVFSMGAMKAPGPDDLNPLFFQSQWQVI 970
           AVFS+    APGPD    LFFQ  W ++
Sbjct: 414 AVFSINKESAPGPDGFTALFFQQHWDLV 441


>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1750

 Score =  181 bits (458), Expect = 1e-43
 Identities = 127/466 (27%), Positives = 218/466 (46%), Gaps = 20/466 (4%)

Query: 522 GVPLLLKDIVMRHRV---SCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVL 578
           G+PL    +    R+     L L E   Q + + K+   LGF +       G SGG+ ++
Sbjct: 393 GMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALM 452

Query: 579 WSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVT 638
           W K+   + ++S   + +    H   N  +F ++ VYG P  S R+ LWQ L++I+    
Sbjct: 453 W-KNNVSLSLISQDERLIDS--HVTFNNKSFYLSCVYGHPTQSERHQLWQTLEHISDNRN 509

Query: 639 KPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTWKG----R 694
             W+ VGDFN  L  ++K+GG      +   FR+ +  C + D+  KG  F+W G     
Sbjct: 510 AEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGERHTH 569

Query: 695 GVKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWL 754
            VK  +D    N+ W ++FP A +  L     DHKP+L+    E      + FRF    +
Sbjct: 570 TVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFN-ESFPRRSKLFRFDNRLI 628

Query: 755 THEDFPRLVKSSWDSHHDS-WIPASEAFCEEAASWNRDVFGEIGRTKRRLMRRLEGINNH 813
               F R+V++SW ++ +S   P +E       +  R        +++R+ +    +N  
Sbjct: 629 DIPTFKRIVQTSWRTNRNSRSTPITERISSCRQAMARLKHASNLNSEQRIKKLQSSLNRA 688

Query: 814 L---RMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFHTTTMVH 870
           +   R      + +LQ+ L K +      EE+ W+QKSR  W+  GD+NT +FH  T   
Sbjct: 689 MESTRRVDRQLIPQLQESLAKAFSD----EEIYWKQKSRNQWMKEGDQNTGYFHACTKTR 744

Query: 871 RKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPYHVRNAFPSLPRETLD- 929
             +N++  + +D G + T   ++ + A   F N++++ G          F S    T++ 
Sbjct: 745 YSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNL 804

Query: 930 EIMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSVV 975
           ++       EI  A+  +G  KAPGPD L   F+++ W ++G  V+
Sbjct: 805 DLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVI 850


>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1524

 Score =  177 bits (450), Expect = 1e-42
 Identities = 120/438 (27%), Positives = 207/438 (46%), Gaps = 17/438 (3%)

Query: 547 QTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNV 606
           Q + + K+   LGF +       G SGG+ ++W K+   + ++S   + +    H   N 
Sbjct: 195 QCDKVCKLAYDLGFPNVITQPPNGRSGGLALMW-KNNVSLSLISQDERLIDS--HVTFNN 251

Query: 607 PNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLS 666
            +F ++ VYG P  S R+ LWQ L++I+      W+ VGDFN  L  ++K+GG      +
Sbjct: 252 KSFYLSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREEWT 311

Query: 667 MAKFRDCLDACSLSDLGFKGPPFTWKG----RGVKERIDWALGNARWISSFPEATVLHLP 722
              FR+ +  C + D+  KG  F+W G      VK  +D    N+ W ++FP A    L 
Sbjct: 312 FRNFRNMVSHCDIEDMRSKGDRFSWVGERHTHTVKCCLDRVFINSAWTATFPYAETEFLD 371

Query: 723 KLKYDHKPILIQLGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSWDSHHDS-WIPASEAF 781
               DHKP+L+    E      + FRF    +    F R+V++SW ++ +S   P +E  
Sbjct: 372 FTGSDHKPVLVHFN-ESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTNRNSRSTPITERI 430

Query: 782 CEEAASWNRDVFGEIGRTKRRLMRRLEGINNHL---RMSHSPYLEKLQKRLWKEYQTVLI 838
                +  R        +++R+ +    +N  +   R      + +LQ+ L K +     
Sbjct: 431 SSCRQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSD--- 487

Query: 839 REELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAV 898
            EE+ W+QKSR  W+  GD+NT +FH  T     +N++  + +D G + T   ++ + A 
Sbjct: 488 -EEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQ 546

Query: 899 TSFQNLYTSPGPGEPYHVRNAFPSLPRETLD-EIMGPLEAAEIRVAVFSMGAMKAPGPDD 957
             F N++++ G          F S    T++ ++       EI  A+  +G  KAPGPD 
Sbjct: 547 DFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDG 606

Query: 958 LNPLFFQSQWQVIGPSVV 975
           L   F+++ W ++G  V+
Sbjct: 607 LTARFYKNCWDIVGYDVI 624


>UniRef100_Q9SZ87 RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  174 bits (442), Expect = 9e-42
 Identities = 120/438 (27%), Positives = 196/438 (44%), Gaps = 37/438 (8%)

Query: 543 EPRVQTNNLPKIMKTLGFEDFFVVEAEGFSGGIWVLWSKHWGDVEILSSHRQFVHLRIHP 602
           E + Q   + K    +G+   F +  EG SGG+ + W ++  +VEIL +           
Sbjct: 2   ETKNQDEFISKTFDWMGYAHRFTIPPEGLSGGLALYWKENV-EVEILEA----------- 49

Query: 603 KNNVPNFLVTFVYGSPNASIRNFLWQELQNIASQVTKPWVTVGDFNTYLQASDKMGGGPP 662
               PNF+            R+  W ++ ++ +Q +  W+  GDFN  L  S+K GG   
Sbjct: 50  ---APNFIDN----------RSVFWDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLR 96

Query: 663 NLLSMAKFRDCLDACSLSDLGFKGPPFTWKGRG----VKERIDWALGNARWISSFPEATV 718
                  FR  +    L D+   G   +W+G      +K R+D ALGN  W   FP +  
Sbjct: 97  WEGFFLAFRSFVSQNGLWDINHTGNSLSWRGTRYSHFIKSRLDRALGNCSWSELFPMSKC 156

Query: 719 LHLPKLKYDHKPILIQLGPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSWD-SHHDSWIPA 777
            +L     DH+P++   G   +  S +PFRF       E+   LVK  W+ +  DS +  
Sbjct: 157 EYLRFEGSDHRPLVTYFGAPPLKRS-KPFRFDRRLREKEEIRALVKEVWELARQDSVLYK 215

Query: 778 SEAFCEEAASWNRDVFGEIGRTKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQTVL 837
                +    W ++      +  ++  + LE       +S       L   + +E +   
Sbjct: 216 ISRCRQSIIKWTKEQNSNSAKAIKKAQQALESA-----LSADIPDPSLIGSITQELEAAY 270

Query: 838 IREELLWRQKSRVNWLNHGDRNTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMA 897
            +EEL W+Q SRV WLN GDRN  +FH TT   R  N +  + +  G+   +++Q+ S  
Sbjct: 271 RQEELFWKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTI 330

Query: 898 VTSFQNLYTSPGPGEPYHVRNAF-PSLPRETLDEIMGPLEAAEIRVAVFSMGAMKAPGPD 956
            + FQN++T+    +   V+ A  P +     +E++      EI+ A+FS+ A KAPGPD
Sbjct: 331 SSYFQNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPD 390

Query: 957 DLNPLFFQSQWQVIGPSV 974
             +  FF + W +I   V
Sbjct: 391 GFSASFFHAYWDIIEADV 408


>UniRef100_O23410 STRONG homology to reverse transcriptase [Arabidopsis thaliana]
          Length = 929

 Score =  171 bits (434), Expect = 8e-41
 Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 26/311 (8%)

Query: 682 LGFKGPPFTWKGRGVKE------RIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQL 735
           +GFKG  FTW+ RG+ E      R+D  L  A     + EA +                 
Sbjct: 1   MGFKGNRFTWR-RGLVESTFVAKRLDRVLFCAHARLKWQEALLCPA-------------- 45

Query: 736 GPEHMDSSQRPFRFLAAWLTHEDFPRLVKSSWDSHHDSWIPASEAFCEEAASWNRDVFGE 795
             +++D+ +RPFRF AAWL+HE F  L+ +SWD+   + + A      +   WN++VFG 
Sbjct: 46  --QNVDARRRPFRFEAAWLSHEGFKELLTASWDTGLSTPV-ALNRLRWQLKKWNKEVFGN 102

Query: 796 IGRTKRRLMRRLEGINNHLRMSHSPYLEKLQKRLWKEYQTVLIREELLWRQKSRVNWLNH 855
           I   K +++  L+ + + L +  +  L   +  L KE+  +L +EE LW QKSR   L  
Sbjct: 103 IHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLWFQKSREKLLAL 162

Query: 856 GDRNTHFFHTTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTSPGPGEPYH 915
           GDRNT FFHT+T++ R+RN+IE L +     +T+++ L  +A+  ++ LY+         
Sbjct: 163 GDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRG 222

Query: 916 V--RNAFPSLPRETLDEIMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPS 973
                 FP L RE  + +  P    E+ VAV SMG  KAPGPD   P+F+Q  W+ +G S
Sbjct: 223 TLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGES 282

Query: 974 VVKLAMTVYSN 984
           V K  M  + +
Sbjct: 283 VSKFVMEFFES 293


>UniRef100_Q9FJA4 Non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1197

 Score =  171 bits (434), Expect = 8e-41
 Identities = 127/476 (26%), Positives = 214/476 (44%), Gaps = 21/476 (4%)

Query: 512 SWNIICAGAQGVPLLLKDIVMRHRVSCLALYEPRVQTNNLPKIMKTLGFEDFFVVEAEGF 571
           SWN    G       +++I+ +     + L E   Q   + K +  L   + F+V   G 
Sbjct: 2   SWNCQGIGNPKTVRRVREILKKLSPDVIFLMETMNQDEVVLKKLDFLKRYNHFLVSPSGQ 61

Query: 572 SGGIWVLWSKHWGDVEILSSHRQFVHLRIHPKNNVPNFLVTFVYGSPNASIRNFLWQELQ 631
             G   L+ KH  ++ I+SS   F+  R+  K    +FL T+VYG P  S +   W++L+
Sbjct: 62  GKGGLALFWKHDVEMAIVSSCDNFIDARVSFKRI--SFLATYVYGEPEQSKKGATWEKLK 119

Query: 632 NIASQVTKPWVTVGDFNTYLQASDKMGGGPPNLLSMAKFRDCLDACSLSDLGFKGPPFTW 691
            +A    +PW   GDFN  L  S+K  G P    S  +FR  +  C L DL   G   +W
Sbjct: 120 CLADNREEPWFLTGDFNEILDNSEKSEGPPRAEGSFVEFRSFMSECGLFDLKHLGNSLSW 179

Query: 692 KG----RGVKERIDWALGNARWISSFPEATVLHLPKLKYDHKPILIQLGPEHMDSSQRPF 747
           +G      V+ R+D A+ N   +  F      +      +H+PI+  L  +     +  F
Sbjct: 180 RGVRHTHLVRARLDRAMSNGACLELFSRGRCDYRKFEGSNHRPIITFL-RQDKQRKKGLF 238

Query: 748 RFLAAWLTHEDFPRLVKSSWDSHHDSWIPASEAFCEEA-ASWNRDVFGEIGRTKRRLMRR 806
           R+      +E+   L+ ++W+      +    + C  A  SW ++       T+R   + 
Sbjct: 239 RYDRRLKENEEIKDLIAAAWNEDLSDSVEKKLSRCRRAIISWTKE-------TQRNSQKI 291

Query: 807 LEGINNHLRMSHSPYLEK--LQKRLWKEYQTVLIREELLWRQKSRVNWLNHGDRNTHFFH 864
           +E +   L  +    +    L  ++  E     + EE  W+Q+SR NWL+ GD+N+ +FH
Sbjct: 292 IEALKVKLEQAMVIPVNDVCLLVQINSELSAAYLAEEAFWKQRSRQNWLSLGDQNSGYFH 351

Query: 865 TTTMVHRKRNKIEALNNDVGELITDQDQLRSMAVTSFQNLYTS--PGPGEPYHV--RNAF 920
             T      N +     D+GE + +  Q   +  T +Q L+TS    P E   +   +  
Sbjct: 352 AVTKGRSCLNNLSVRETDLGEKVFEDSQFAEVISTCYQALFTSQLSNPEEISRIVQESVH 411

Query: 921 PSLPRETLDEIMGPLEAAEIRVAVFSMGAMKAPGPDDLNPLFFQSQWQVIGPSVVK 976
           P +  E  D ++    A EI+ A+F++   KAPG D  +  FFQ+ W ++G S+V+
Sbjct: 412 PKVIEEENDFLISIPSAMEIKEALFNVHPDKAPGYDGFSASFFQTNWTIVGESIVQ 467


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.328    0.141    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,760,067,972
Number of Sequences: 2790947
Number of extensions: 77411765
Number of successful extensions: 215007
Number of sequences better than 10.0: 477
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 307
Number of HSP's that attempted gapping in prelim test: 213511
Number of HSP's gapped (non-prelim): 955
length of query: 992
length of database: 848,049,833
effective HSP length: 137
effective length of query: 855
effective length of database: 465,690,094
effective search space: 398165030370
effective search space used: 398165030370
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 80 (35.4 bits)