BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0104.7
(76 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_O24660 Transport inhibitor response 1 [Arabidopsis tha... 95 5e-19
UniRef100_Q9LW29 Transport inhibitor response-like protein [Arab... 92 3e-18
UniRef100_Q9LPW7 F13K23.7 protein [Arabidopsis thaliana] 92 4e-18
UniRef100_Q9ZR12 Putative homolog of transport inhibitor respons... 89 4e-17
UniRef100_Q9C5Y7 GRR1-like protein 1 [Arabidopsis thaliana] 89 4e-17
UniRef100_Q94AU0 Putative F-box protein GRR1 protein 1, AtFBL18 ... 89 4e-17
UniRef100_Q9AUH6 F-box containing protein TIR1 [Populus tremula ... 82 3e-15
UniRef100_Q7XVM8 OSJNBa0072K14.18 protein [Oryza sativa] 80 1e-14
UniRef100_Q9LTX2 Transport inhibitor response 1 protein [Arabido... 79 2e-14
UniRef100_Q8RWQ8 AT4g24390/T22A6_220 [Arabidopsis thaliana] 77 8e-14
UniRef100_Q6K8E2 Putative F-box containing protein TIR1 [Oryza s... 74 7e-13
UniRef100_O04197 Coronatine-insensitive 1 (COI1), AtFBL2 [Arabid... 64 7e-10
UniRef100_Q60EH4 Putative LRR-containing F-box protein [Oryza sa... 60 1e-08
UniRef100_Q6TDU2 Coronatine-insensitive 1 [Lycopersicon esculentum] 60 1e-08
UniRef100_Q8W0G4 P0529E05.15 protein [Oryza sativa] 58 5e-08
UniRef100_Q6Y9P5 COI1 [Oryza sativa] 58 5e-08
UniRef100_Q8H7P5 Putative F-box containing protein TIR1 [Oryza s... 57 1e-07
UniRef100_Q84QA7 Hypothetical protein OJ1012B02.14 [Oryza sativa] 53 2e-06
UniRef100_Q8LGK0 F-box protein family, AtFBL4 [Arabidopsis thali... 44 8e-04
UniRef100_Q9C5D2 Putative F-box protein family, AtFBL4 [Arabidop... 43 0.002
>UniRef100_O24660 Transport inhibitor response 1 [Arabidopsis thaliana]
Length = 594
Score = 94.7 bits (234), Expect = 5e-19
Identities = 44/71 (61%), Positives = 51/71 (70%)
Query: 6 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
A FP+EVLE V ++ KDR+SVSLVCK WY ERW RR VFIGNCY+VSP + RR
Sbjct: 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRF 65
Query: 66 SNIRSVTLKGK 76
+RSV LKGK
Sbjct: 66 PKVRSVELKGK 76
>UniRef100_Q9LW29 Transport inhibitor response-like protein [Arabidopsis thaliana]
Length = 575
Score = 92.4 bits (228), Expect = 3e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FPDEV+E V V S KDR+++SLVCK WY ER+SR+ VFIGNCY+++PE L RR +
Sbjct: 4 FPDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRRFPCL 63
Query: 69 RSVTLKGK 76
+S+TLKGK
Sbjct: 64 KSLTLKGK 71
>UniRef100_Q9LPW7 F13K23.7 protein [Arabidopsis thaliana]
Length = 577
Score = 91.7 bits (226), Expect = 4e-18
Identities = 41/68 (60%), Positives = 53/68 (77%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FPDEV+E V V S KDR+S+SLVCK W+ ER+SR+ VFIGNCY+++PE L RR +
Sbjct: 4 FPDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRRFPCL 63
Query: 69 RSVTLKGK 76
+S+TLKGK
Sbjct: 64 KSLTLKGK 71
>UniRef100_Q9ZR12 Putative homolog of transport inhibitor response 1 [Arabidopsis
thaliana]
Length = 585
Score = 88.6 bits (218), Expect = 4e-17
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRR +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 69 RSVTLKGK 76
RS+TLKGK
Sbjct: 65 RSLTLKGK 72
>UniRef100_Q9C5Y7 GRR1-like protein 1 [Arabidopsis thaliana]
Length = 585
Score = 88.6 bits (218), Expect = 4e-17
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRR +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 69 RSVTLKGK 76
RS+TLKGK
Sbjct: 65 RSLTLKGK 72
>UniRef100_Q94AU0 Putative F-box protein GRR1 protein 1, AtFBL18 [Arabidopsis
thaliana]
Length = 585
Score = 88.6 bits (218), Expect = 4e-17
Identities = 39/68 (57%), Positives = 52/68 (76%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP +VLE +L + S +DR+SVSLVCK W+ ER +R+ VF+GNCY+VSP +TRR +
Sbjct: 5 FPPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCYAVSPAAVTRRFPEM 64
Query: 69 RSVTLKGK 76
RS+TLKGK
Sbjct: 65 RSLTLKGK 72
>UniRef100_Q9AUH6 F-box containing protein TIR1 [Populus tremula x Populus
tremuloides]
Length = 635
Score = 82.4 bits (202), Expect = 3e-15
Identities = 41/74 (55%), Positives = 52/74 (69%), Gaps = 4/74 (5%)
Query: 7 SPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILT 62
+P+PD+VLE VL V SRKDR++ SLVC+ WY E +R +FIGNCY+VSP+
Sbjct: 63 APYPDQVLENVLENVLWFLTSRKDRNAASLVCRSWYRVEALTRSDLFIGNCYAVSPKRAM 122
Query: 63 RRSSNIRSVTLKGK 76
R + IRSVTLKGK
Sbjct: 123 SRFTRIRSVTLKGK 136
>UniRef100_Q7XVM8 OSJNBa0072K14.18 protein [Oryza sativa]
Length = 575
Score = 80.1 bits (196), Expect = 1e-14
Identities = 34/68 (50%), Positives = 50/68 (73%)
Query: 9 FPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNI 68
FP+EV+E + + +++DR++VSLVCK WY ER SRR VF+GNCY+V + R N+
Sbjct: 4 FPEEVVEHIFSFLPAQRDRNTVSLVCKVWYEIERLSRRGVFVGNCYAVRAGRVAARFPNV 63
Query: 69 RSVTLKGK 76
R++T+KGK
Sbjct: 64 RALTVKGK 71
>UniRef100_Q9LTX2 Transport inhibitor response 1 protein [Arabidopsis thaliana]
Length = 619
Score = 79.3 bits (194), Expect = 2e-14
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 1 NILNQASPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSV 56
N ++ + FPD VLE VL V SR DR++ SLVCK W+ E +R VFIGNCY++
Sbjct: 42 NCISNSQTFPDHVLENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCYAL 101
Query: 57 SPEILTRRSSNIRSVTLKGK 76
SP LT+R +RS+ LKGK
Sbjct: 102 SPARLTQRFKRVRSLVLKGK 121
>UniRef100_Q8RWQ8 AT4g24390/T22A6_220 [Arabidopsis thaliana]
Length = 623
Score = 77.4 bits (189), Expect = 8e-14
Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 1 NILNQASPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSV 56
N + P PD VLE VL V SR DR++VSLVC+ WY E +R VFIGNCYS+
Sbjct: 42 NFKSSPPPCPDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCYSL 101
Query: 57 SPEILTRRSSNIRSVTLKGK 76
SP L R +RS+ LKGK
Sbjct: 102 SPARLIHRFKRVRSLVLKGK 121
>UniRef100_Q6K8E2 Putative F-box containing protein TIR1 [Oryza sativa]
Length = 637
Score = 74.3 bits (181), Expect = 7e-13
Identities = 36/71 (50%), Positives = 47/71 (65%), Gaps = 4/71 (5%)
Query: 10 PDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
PD+VLE VL V + +DR++ SLVC+ WY AE +RR +FIGNCY+VSP R
Sbjct: 64 PDQVLENVLESVLEFLTAARDRNAASLVCRSWYRAEAQTRRELFIGNCYAVSPRRAVERF 123
Query: 66 SNIRSVTLKGK 76
+R+V LKGK
Sbjct: 124 GGVRAVVLKGK 134
>UniRef100_O04197 Coronatine-insensitive 1 (COI1), AtFBL2 [Arabidopsis thaliana]
Length = 592
Score = 64.3 bits (155), Expect = 7e-10
Identities = 28/66 (42%), Positives = 44/66 (66%)
Query: 11 DEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIRS 70
D+V+E+V+ + KDR S SLVC+ W+ + +R V + CY+ +P+ L+RR N+RS
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 71 VTLKGK 76
+ LKGK
Sbjct: 78 LKLKGK 83
>UniRef100_Q60EH4 Putative LRR-containing F-box protein [Oryza sativa]
Length = 597
Score = 60.1 bits (144), Expect = 1e-08
Identities = 28/71 (39%), Positives = 41/71 (57%)
Query: 6 ASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRS 65
A P+E L VLG V +DR +VSLVC+ W+ + +R+ V + CY+ SP L R
Sbjct: 20 AGSIPEEALHLVLGYVDDPRDREAVSLVCRRWHRIDALTRKHVTVPFCYAASPAHLLARF 79
Query: 66 SNIRSVTLKGK 76
+ S+ +KGK
Sbjct: 80 PRLESLAVKGK 90
>UniRef100_Q6TDU2 Coronatine-insensitive 1 [Lycopersicon esculentum]
Length = 603
Score = 60.1 bits (144), Expect = 1e-08
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 1 NILNQASPFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI 60
N +S D V E V+ ++ +DR +VSLVCK W+ + +R+ + + CY+ PE
Sbjct: 5 NSTRLSSSTNDTVWECVIPYIQESRDRDAVSLVCKRWWQIDAITRKHITMALCYTAKPEQ 64
Query: 61 LTRRSSNIRSVTLKGK 76
L+RR ++ SV LKGK
Sbjct: 65 LSRRFPHLESVKLKGK 80
>UniRef100_Q8W0G4 P0529E05.15 protein [Oryza sativa]
Length = 630
Score = 58.2 bits (139), Expect = 5e-08
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 3 LNQASPF----PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSP 58
LN+A F PDE L V+G V+ +DR + S VC+ W+ + +R+ V + CY+ P
Sbjct: 46 LNRALSFDDWVPDEALHLVMGHVEDPRDREAASRVCRRWHRIDALTRKHVTVAFCYAARP 105
Query: 59 EILTRRSSNIRSVTLKGK 76
L R + S++LKGK
Sbjct: 106 ARLRERFPRLESLSLKGK 123
>UniRef100_Q6Y9P5 COI1 [Oryza sativa]
Length = 595
Score = 58.2 bits (139), Expect = 5e-08
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 3 LNQASPF----PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSP 58
LN+A F PDE L V+G V+ +DR + S VC+ W+ + +R+ V + CY+ P
Sbjct: 11 LNRALSFDDWVPDEALHLVMGHVEDPRDREAASRVCRRWHRIDALTRKHVTVAFCYAARP 70
Query: 59 EILTRRSSNIRSVTLKGK 76
L R + S++LKGK
Sbjct: 71 ARLRERFPRLESLSLKGK 88
>UniRef100_Q8H7P5 Putative F-box containing protein TIR1 [Oryza sativa]
Length = 603
Score = 57.0 bits (136), Expect = 1e-07
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 5 QASPFPDEVLERVLGMV----KSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEI 60
+ASP PD+VL+ VL V S +DR + SLVC+ W AE +R SV + N + SP
Sbjct: 19 RASPPPDQVLDNVLETVLQFLDSARDRCAASLVCRSWSRAESATRASVAVRNLLAASPAR 78
Query: 61 LTRRSSNIRSVTLKGK 76
+ RR R V LKG+
Sbjct: 79 VARRFPAARRVLLKGR 94
>UniRef100_Q84QA7 Hypothetical protein OJ1012B02.14 [Oryza sativa]
Length = 589
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/67 (38%), Positives = 38/67 (55%)
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSPEILTRRSSNIR 69
PD L V+G V+ DR ++SLVC+ W + SR+ V + YS +P+ L RR +
Sbjct: 19 PDVALGLVMGFVEDPWDRDAISLVCRHWCRVDALSRKHVTVAMAYSTTPDRLFRRFPCLE 78
Query: 70 SVTLKGK 76
S+ LK K
Sbjct: 79 SLKLKAK 85
>UniRef100_Q8LGK0 F-box protein family, AtFBL4 [Arabidopsis thaliana]
Length = 610
Score = 44.3 bits (103), Expect = 8e-04
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSP--EILTRRSSN 67
P+E++ + ++S+ +R + SLVCK W + ER+SR ++ IG +S +L+RR +
Sbjct: 12 PEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGASFSPDDFISLLSRRFLH 71
Query: 68 IRSV 71
I S+
Sbjct: 72 ITSI 75
>UniRef100_Q9C5D2 Putative F-box protein family, AtFBL4 [Arabidopsis thaliana]
Length = 610
Score = 43.1 bits (100), Expect = 0.002
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 10 PDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRSVFIGNCYSVSP--EILTRRSSN 67
P+E++ + ++S+ +R + SLVCK W + ER+SR ++ IG +S +L+RR
Sbjct: 12 PEELILEIFRRLESKPNRDACSLVCKRWLSLERFSRTTLRIGASFSPDDFISLLSRRFLY 71
Query: 68 IRSV 71
I S+
Sbjct: 72 ITSI 75
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,901,116
Number of Sequences: 2790947
Number of extensions: 3392709
Number of successful extensions: 8474
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8436
Number of HSP's gapped (non-prelim): 47
length of query: 76
length of database: 848,049,833
effective HSP length: 52
effective length of query: 24
effective length of database: 702,920,589
effective search space: 16870094136
effective search space used: 16870094136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0104.7