BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0096b.3
         (223 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_UPI0000298CD9 UPI0000298CD9 UniRef100 entry                  35  1.4
UniRef100_P32571 Ubiquitin carboxyl-terminal hydrolase 4 [Saccha...    34  3.2
UniRef100_Q7UK87 Hypothetical protein [Rhodopirellula baltica]         32  9.3

>UniRef100_UPI0000298CD9 UPI0000298CD9 UniRef100 entry
          Length = 152

 Score = 35.0 bits (79), Expect = 1.4
 Identities = 26/74 (35%), Positives = 37/74 (49%), Gaps = 3/74 (4%)

Query: 45  GLSIQTRGMLSPHIHHRMQDVGALVELDPGTPVPEVLALDSSLILPDALKFVSVMTKAIR 104
           G SI   G++S  +      +G L+E+ P      VLA  +S+  PDAL  +SV      
Sbjct: 23  GTSIAWIGVISHFMVEWCARIGCLLEIPPVVMGTTVLAAGTSI--PDALSSISVAKDGYA 80

Query: 105 DLIIAKQVGV-VFD 117
           D+ +A  VG  VFD
Sbjct: 81  DMAVANAVGSNVFD 94


>UniRef100_P32571 Ubiquitin carboxyl-terminal hydrolase 4 [Saccharomyces cerevisiae]
          Length = 926

 Score = 33.9 bits (76), Expect = 3.2
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)

Query: 28  VVDDVVYHLQLLSGNTNGLSIQTRGMLSPHIHHRMQD 64
           + DD VY    ++GNT+GLS+Q    +SP I H M D
Sbjct: 338 IKDDSVY----INGNTSGLSLQHLPKMSPSIRHSMDD 370


>UniRef100_Q7UK87 Hypothetical protein [Rhodopirellula baltica]
          Length = 487

 Score = 32.3 bits (72), Expect = 9.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 16  VLVRMARVVSLVVVDDVVYHLQLLSGNT---NGLSIQTRGMLSPHIHHRMQDVG 66
           VL   AR++ L + DD    L +LSG T   +G S    GM+   +H R+ ++G
Sbjct: 384 VLAAYARLLELNLTDDQWSRLAILSGGTDGEDGPSDAAGGMIDGDVHRRIMELG 437


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.324    0.142    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,227,365
Number of Sequences: 2790947
Number of extensions: 15283091
Number of successful extensions: 33774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 33774
Number of HSP's gapped (non-prelim): 3
length of query: 223
length of database: 848,049,833
effective HSP length: 123
effective length of query: 100
effective length of database: 504,763,352
effective search space: 50476335200
effective search space used: 50476335200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)