BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0060.3
(388 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q8GSD3 DNA binding protein-like [Oryza sativa] 44 0.006
UniRef100_Q94DN4 P0483G10.9 protein [Oryza sativa] 44 0.008
UniRef100_Q9C8B2 Hypothetical protein F10O5.9 [Arabidopsis thali... 44 0.008
UniRef100_Q6Z4I5 DNA binding protein-like [Oryza sativa] 42 0.038
UniRef100_Q5W672 Hypothetical protein OSJNBa0075A10.9 [Oryza sat... 41 0.050
UniRef100_Q9S9S4 F28J9.5 [Arabidopsis thaliana] 40 0.15
UniRef100_Q8S8A3 Putative replication protein A1 [Arabidopsis th... 40 0.15
UniRef100_Q9C926 Putative replication protein; 94555-97079 [Arab... 39 0.19
UniRef100_Q9MBH0 Replication protein-like [Arabidopsis thaliana] 39 0.25
UniRef100_Q9M251 Hypothetical protein F7M19_110 [Arabidopsis tha... 39 0.25
UniRef100_Q9SIG4 Putative replication protein A1 [Arabidopsis th... 38 0.55
UniRef100_Q9LTU1 Replication protein A1-like [Arabidopsis thaliana] 35 2.7
UniRef100_UPI00003342BA UPI00003342BA UniRef100 entry 35 3.6
UniRef100_Q9M3F5 Hypothetical protein T14K23_120 [Arabidopsis th... 35 4.7
UniRef100_Q6CG77 Similar to sp|P22929 Saccharomycopsis fibuliger... 35 4.7
UniRef100_P45489 Hypothetical protein Cj0990c [Campylobacter jej... 35 4.7
UniRef100_UPI0000439782 UPI0000439782 UniRef100 entry 34 6.1
>UniRef100_Q8GSD3 DNA binding protein-like [Oryza sativa]
Length = 566
Score = 44.3 bits (103), Expect = 0.006
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 176 KTLLQLI----HTEQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCR 230
KT+ +L+ H +R F I + + W Y SC +C +K + Y C+ C
Sbjct: 258 KTVRELLDMNPHKNRRTRFQANVTIRKICNDSSWWYNSCEKCLRVVKPFGYTYKCTGCYN 317
Query: 231 TMIMIFYFYRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASPQ 280
+ + RY+L+V D +VFIL A I++K E +P+
Sbjct: 318 IAMAV---PRYKLSVLAGDDTADAVFILFGKIAQRIVRKPVELLVEQTPR 364
>UniRef100_Q94DN4 P0483G10.9 protein [Oryza sativa]
Length = 501
Score = 43.9 bits (102), Expect = 0.008
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 11/156 (7%)
Query: 127 KLHINPVVEDQSVFNERFS-GFEIEEPVEYLGYRDSEFNLQDDFIHLHPAKTLLQLI-HT 184
K +IN + D E FS F+ P++++ FN D K +L+L H
Sbjct: 280 KWYINLDIPDVLKLKESFSVNFQ---PIKWVENAAPAFN--QDTPEEKTIKEILKLNPHK 334
Query: 185 EQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRTMIMIFYFYRYRL 243
+R FIV I S+ W Y SC RC K Y CS CC + + RY++
Sbjct: 335 YKRARFIVNVTIKSIHDENCWWYNSCDRCCRTSKPYGSTYRCSSCCYIGMPV---PRYKV 391
Query: 244 NVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASP 279
+ +D + F+L A +I + E +P
Sbjct: 392 VLTTADNTSEAAFVLFGRIAHRLIHRPVESLIEENP 427
>UniRef100_Q9C8B2 Hypothetical protein F10O5.9 [Arabidopsis thaliana]
Length = 567
Score = 43.9 bits (102), Expect = 0.008
Identities = 30/130 (23%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 8 FHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE--D 65
F L + + + W ++V+++ WK + ++ ++++++ D K+ A V KE
Sbjct: 5 FAYLKDVRPYKNAWRVQVKILHSWK---QYTSNTRETIELVISDEHGKKMHATVKKELVS 61
Query: 66 PITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSV---ESRELIVQSI 122
++ G IF +T G R TNH YK+ RT + +S L + S
Sbjct: 62 KFVHKLIVGEWVFIEIFGLTYASGQFRPTNHLYKMAFQVRTEVMGCASVSDSNFLTLASF 121
Query: 123 PNVTKLHINP 132
+ +NP
Sbjct: 122 SKIQSGELNP 131
>UniRef100_Q6Z4I5 DNA binding protein-like [Oryza sativa]
Length = 544
Score = 41.6 bits (96), Expect = 0.038
Identities = 32/138 (23%), Positives = 54/138 (38%), Gaps = 19/138 (13%)
Query: 190 FIVQARIVSVIKAAGWAYPSCR-CYSELKVVNHGYSCSRCCRTMIMIFYFYRYRLNVHVS 248
F ARI + ++GW Y +C C +K G+ C C T +I Y+LNV +
Sbjct: 292 FTCDARIKEIDVSSGWWYKACSICRKGVKPTLQGFECVNCDNTEPII--TPSYKLNVVIE 349
Query: 249 DGVQSSVFILSDPEATHIIKKACEEFAYAS-------PQPLAAHFPPEVEEKLVGAEVLF 301
D + + A ++++ + S P PL A L+G +F
Sbjct: 350 DNTDRAKIFMFGGMAEQVVRRTAADLVEESSANQLLLPSPLRA---------LIGRRFVF 400
Query: 302 KVRNDVRRLYDGCFCYDV 319
++ + G C+ V
Sbjct: 401 QIVISEQTFRTGQLCFQV 418
Score = 39.7 bits (91), Expect = 0.15
Identities = 25/80 (31%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
Query: 8 FHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKED-- 65
+ L+Q++ H W IKVRV W ++L++IL+D E V I A V + +
Sbjct: 3 YSLLSQINSTRHNWRIKVRVARSWHLSGTSKRRDFTALELILVDEEGVGITACVGENEIQ 62
Query: 66 PITKNIVPGGVYKFSIFQVT 85
+ +IV G Y F+V+
Sbjct: 63 KFSTSIVEGHAYFLRNFRVS 82
>UniRef100_Q5W672 Hypothetical protein OSJNBa0075A10.9 [Oryza sativa]
Length = 820
Score = 41.2 bits (95), Expect = 0.050
Identities = 27/104 (25%), Positives = 47/104 (44%), Gaps = 3/104 (2%)
Query: 7 PFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE-- 64
P + + +L+ W IKV+VI LW + ++MI++D E I + K+
Sbjct: 3 PSNLITELTPKNDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQLA 62
Query: 65 DPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMI 108
+ I +Y F F+V H RV + K+L + T++
Sbjct: 63 NHFRPKIKINSIYTFKNFKV-MEHDKYRVLKNNLKILFYHDTIV 105
>UniRef100_Q9S9S4 F28J9.5 [Arabidopsis thaliana]
Length = 483
Score = 39.7 bits (91), Expect = 0.15
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 201 KAAGWAYPSCRC-YSELKVVNHGYSCSRCCRTMIMIFYFYRYRLNVHVSDGVQSSVFILS 259
KA G A P C C + + YS ++M YRY+L + S G V +L
Sbjct: 289 KAHGDAGPICSCGVCDADATDVSYSVVYLL--IMMSLDLYRYKLILRASYGASPEVKLLF 346
Query: 260 -DPEATHIIKKACEEFAYASPQPLAAHFPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYD 318
D A +I K EF P+ PEV L+G +LFK+ L Y
Sbjct: 347 FDGLAQCLIGKTAAEFFAEVPKESDPSILPEVLADLMGKTMLFKLSIGTDNLKSTKAAYV 406
Query: 319 VLHICSDSETMDKFSAKRTSVT 340
V ++ ++KF+ + T V+
Sbjct: 407 VEKFWEKTDMVEKFAKELTVVS 428
>UniRef100_Q8S8A3 Putative replication protein A1 [Arabidopsis thaliana]
Length = 521
Score = 39.7 bits (91), Expect = 0.15
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 173 HPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSC-RCYSELKVVNHGYSCSRCCRT 231
+PAKT++ L++ G + + I ++ GW Y C +C ++++V S + +
Sbjct: 220 YPAKTIVDLLNGRDVGQWRILGSIFAIDTDWGWFYFGCPKCNRKIELVKESTSTVKRIQA 279
Query: 232 MIMIFYFY------------RYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASP 279
++ RY+L++ V D ++ + AT++I+K+ EE
Sbjct: 280 PTKPKFWCDKYQESITNVEARYKLHIRVMDQTGEIKLMVFENNATNLIRKSSEELLDGQY 339
Query: 280 QPLA-AHFPPEVEEKLVGAEVLFKVRNDVRRLYDG 313
+ + P+V L G F V + +Y G
Sbjct: 340 EEIEDPTIKPDVITNLCGKTFHFLVSVEKANIYGG 374
>UniRef100_Q9C926 Putative replication protein; 94555-97079 [Arabidopsis thaliana]
Length = 566
Score = 39.3 bits (90), Expect = 0.19
Identities = 28/104 (26%), Positives = 48/104 (45%), Gaps = 5/104 (4%)
Query: 5 VIPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE 64
V P+ + L + W I+V+++ W + S S +M+L D + KI+A + KE
Sbjct: 4 VNPYTAIKNLKPFKTSWCIQVKILHAWN---HYTKGSGMSYEMMLADEDGNKIQAGIKKE 60
Query: 65 D--PITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRT 106
+ + + G F VT G+ R T H Y++ + S T
Sbjct: 61 HLLKLQRYVKIGHWTIIEEFSVTKASGLYRSTTHPYRINIQSST 104
>UniRef100_Q9MBH0 Replication protein-like [Arabidopsis thaliana]
Length = 170
Score = 38.9 bits (89), Expect = 0.25
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 6 IPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKED 65
+PF L L + + W I+V+++ +W+ + S++MIL++ K+ A V +E
Sbjct: 7 LPFTPLKSLKPYKNAWRIQVKLLHVWR---QYSVKVGESIEMILVNEVGDKMYAPVRREQ 63
Query: 66 -PITKNIVPGGVYKFSIFQVTCNH--GVNRVTNHRYKLLLHSRTMIFP 110
+ + GV+K I +T NH G R+++ +YK+ +T + P
Sbjct: 64 IEKIERCLTEGVWKI-ITTITLNHTSGQYRISDLKYKIGFVFKTTVSP 110
>UniRef100_Q9M251 Hypothetical protein F7M19_110 [Arabidopsis thaliana]
Length = 269
Score = 38.9 bits (89), Expect = 0.25
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 6 IPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKED 65
+PF L L + + W I+V+++ +W+ + + S++MIL+D K+ A V +E
Sbjct: 7 LPFTPLKSLKPYKNAWRIQVKLLHVWR---QYSVKAGESIEMILVDEAGDKMYAAVRREQ 63
Query: 66 -PITKNIVPGGVYKFSIFQVTCN--HGVNRVTNHRYKLLLHSRTMIFP 110
+ + GV+K I +T N G R+++ +YK+ +T + P
Sbjct: 64 IKKFERCLTEGVWKI-ITTITLNPTSGKYRISDLKYKIGFVFKTTVSP 110
>UniRef100_Q9SIG4 Putative replication protein A1 [Arabidopsis thaliana]
Length = 240
Score = 37.7 bits (86), Expect = 0.55
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 5 VIPFHTLNQLSLWPHIWTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKE 64
+I FH L +LS W I V V+ ++K ++L L+++L+D+ +IEA +
Sbjct: 1 MIQFHRLYELSPLVTGWAICVMVVRVYK---KILNHDAFELRLLLVDKLGTQIEATIGPR 57
Query: 65 ------DPITKNIVPGGVYKFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSVESRELI 118
D I +N + F V N R T H +++L +T++ PS ++
Sbjct: 58 FSAFYYDRIKENQWK----TITTFIVRPNCEAIRTTPHEFRILFMEQTVVTPSTTKETVV 113
Query: 119 VQS 121
+ +
Sbjct: 114 LNN 116
>UniRef100_Q9LTU1 Replication protein A1-like [Arabidopsis thaliana]
Length = 581
Score = 35.4 bits (80), Expect = 2.7
Identities = 36/164 (21%), Positives = 60/164 (35%), Gaps = 16/164 (9%)
Query: 173 HPAKTLLQLIHTEQRGVFIVQARIVSVIKAAGWAYPSCR-CYSELKVVNHG--------- 222
+P T+ QL++ G + I ++ W Y SCR C ++ ++ G
Sbjct: 269 YPRNTIQQLLNAVDVGKARLMCTIYAIDTDWAWYYISCRACNKKVTHIHSGVHGVNNKGK 328
Query: 223 ---YSCSRCCRTMIMIFYFYRYRLNVHVSDGVQSSVFILSDPEATHIIKKACEEFAYASP 279
+ C C ++ RY + V D S +L D T II + S
Sbjct: 329 KPRFWCDSC--KTVVTNVIARYMIYAKVMDNTGESKLLLFDQICTEIIGETAPSVLNGSV 386
Query: 280 QPL-AAHFPPEVEEKLVGAEVLFKVRNDVRRLYDGCFCYDVLHI 322
+ P+ + L G LF V + ++DG Y V +
Sbjct: 387 DEIDDPDDLPDALKNLYGKTFLFLVSIEKENIWDGKEIYKVTKV 430
Score = 34.3 bits (77), Expect = 6.1
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 21 WTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYVCKEDPITK--NIVPGGVYK 78
W ++V+ + W+ + ++ +L+++ D KI V ++D ++K N++ G +
Sbjct: 18 WRVQVKTLHAWR---QYTANTGETLEVVFSDETGKKIHCSV-RKDLVSKYANMLTVGEWV 73
Query: 79 F-SIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPS---VESRELIVQSIPNVTKLHINPVV 134
F F + G R T+H YK+ + T + PS +S L + + + +NP +
Sbjct: 74 FIETFSLNYAGGSFRPTSHLYKMSFVNGTSVIPSPSVSDSNYLTLATFEKIQSGELNPTM 133
>UniRef100_UPI00003342BA UPI00003342BA UniRef100 entry
Length = 215
Score = 35.0 bits (79), Expect = 3.6
Identities = 32/134 (23%), Positives = 65/134 (47%), Gaps = 18/134 (13%)
Query: 102 LHSRTMIFPSVESRELIVQSIPNVTKLHINPVVEDQSVFNE-RFSGFEIEEPVEYLGYRD 160
LH I + + ++ ++ V + +N +++D F + + + F++ + ++G +
Sbjct: 3 LHKNNFINNNWNALNILPRNASTVGAIDLNFIMKDDQFFKKLQNNEFKL---LYFVGSDN 59
Query: 161 SEFNLQDDFI-----HLHPAKTLLQLI-----HTEQRGVFI-VQARIVSVIKAAGWAYPS 209
SEFN +D+FI H + +I +TEQ G+FI ++ R+ +KA +YP
Sbjct: 60 SEFNKKDEFIIYQGSHGDKRAQIADIILPSPAYTEQNGLFINLEGRLQKCLKA---SYPP 116
Query: 210 CRCYSELKVVNHGY 223
+ K+ N Y
Sbjct: 117 GSSKEDWKIFNSIY 130
>UniRef100_Q9M3F5 Hypothetical protein T14K23_120 [Arabidopsis thaliana]
Length = 474
Score = 34.7 bits (78), Expect = 4.7
Identities = 26/111 (23%), Positives = 50/111 (44%), Gaps = 6/111 (5%)
Query: 21 WTIKVRVICLWKTPEEMLESSHSSLKMILIDREAVKIEAYV---CKEDPITKNIVPGGVY 77
W + V+++ LW P MIL D + KI+A K++ + + G Y
Sbjct: 278 WFVFVKLLRLWNWPPNY---DGEEPTMILADEKGNKIDANSPLHVKKEVLISTLKEGQWY 334
Query: 78 KFSIFQVTCNHGVNRVTNHRYKLLLHSRTMIFPSVESRELIVQSIPNVTKL 128
S F+V + ++R +NH + H+ T+ V I++++ + K+
Sbjct: 335 LLSHFEVAVANPLDRFSNHPLYRIKHASTVEKQFVVDAMGIIEAVSPIGKI 385
>UniRef100_Q6CG77 Similar to sp|P22929 Saccharomycopsis fibuligera Acid protease
[Yarrowia lipolytica]
Length = 476
Score = 34.7 bits (78), Expect = 4.7
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 91 NRVTNHRYKLLLHSRTMIFPSVESRELIVQSI---------PNVTKLHINPVVEDQSVFN 141
N + R+ LL T+ + E+ + ++ ++ P TK HI+ + D++V +
Sbjct: 270 NALDKTRHVLLDSGTTLTYVPTETYQTLINALGLLDDDNYGPGTTKEHIDQLKADKAVVS 329
Query: 142 ERFSGFEIEEPVEYL 156
+F G +IE PV+ L
Sbjct: 330 YKFQGKKIEVPVDQL 344
>UniRef100_P45489 Hypothetical protein Cj0990c [Campylobacter jejuni]
Length = 253
Score = 34.7 bits (78), Expect = 4.7
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 298 EVLFKVRNDVRRLYDGCFCYDVLHICSDSETMDKFSAKRTSVTLVESKSDSRVTYLEEDN 357
+++FK ++ + CFC D I E D ++V L+E DS T+ E
Sbjct: 4 KIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSNVDLLEFSDDS-FTFEEIVK 62
Query: 358 KQAVCVVEKVGLLDEDEMISNVKHNWNQ 385
+C E + ++++ +M SN K N NQ
Sbjct: 63 HFNICDTEDMIIVEDFDMKSN-KDNQNQ 89
>UniRef100_UPI0000439782 UPI0000439782 UniRef100 entry
Length = 403
Score = 34.3 bits (77), Expect = 6.1
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 129 HINPVVEDQSVFNERFSGFE--IEEPVEYLGYRDSEFNLQDDFIHLH 173
H + DQ +F + SG E +EE +EY G D F DD+I+ H
Sbjct: 344 HNGVFIHDQMLFTDFVSGVEDYLEEIIEYHGLSDDVFEDLDDYIYRH 390
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,812,568
Number of Sequences: 2790947
Number of extensions: 25603662
Number of successful extensions: 57163
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 57156
Number of HSP's gapped (non-prelim): 20
length of query: 388
length of database: 848,049,833
effective HSP length: 129
effective length of query: 259
effective length of database: 488,017,670
effective search space: 126396576530
effective search space used: 126396576530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)
Lotus: description of TM0060.3