BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0048.13
(98 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q5TKF9 Hypothetical protein OSJNBa0030I14.7 [Oryza sat... 163 1e-39
UniRef100_Q8VYI0 At1g65700/F1E22_3 [Arabidopsis thaliana] 157 8e-38
UniRef100_Q9SHY4 F1E22.8 [Arabidopsis thaliana] 143 9e-34
UniRef100_Q7PZC3 ENSANGP00000020162 [Anopheles gambiae str. PEST] 127 5e-29
UniRef100_UPI0000438348 UPI0000438348 UniRef100 entry 127 8e-29
UniRef100_UPI0000365500 UPI0000365500 UniRef100 entry 127 8e-29
UniRef100_UPI00003A9603 LSM8 protein [Homo sapiens] 125 2e-28
UniRef100_Q9W087 CG2021-PA [Drosophila melanogaster] 125 2e-28
UniRef100_O95777 U6 snRNA-associated Sm-like protein LSm8 [Homo ... 124 7e-28
UniRef100_Q6NTS4 MGC82379 protein [Xenopus laevis] 122 2e-27
UniRef100_UPI000032EAAB UPI000032EAAB UniRef100 entry 122 3e-27
UniRef100_Q61U50 Hypothetical protein CBG05470 [Caenorhabditis b... 108 3e-23
UniRef100_Q95XD4 Lsm sm-like protein protein 8 [Caenorhabditis e... 105 2e-22
UniRef100_Q8IBC4 U6 snRNA-associated sm-like protein, putative [... 103 8e-22
UniRef100_UPI000042CB0E UPI000042CB0E UniRef100 entry 100 6e-21
UniRef100_O74483 U6 snRNA-associated Sm-like protein LSm8 [Schiz... 96 2e-19
UniRef100_Q6CFJ1 Similar to sp|O95777 Homo sapiens U6 snRNA-asso... 83 2e-15
UniRef100_UPI0000467A43 UPI0000467A43 UniRef100 entry 75 4e-13
UniRef100_Q6MYW7 U6 snrna-associated sm-like protein, putative [... 74 6e-13
UniRef100_UPI000021BE43 UPI000021BE43 UniRef100 entry 66 2e-10
>UniRef100_Q5TKF9 Hypothetical protein OSJNBa0030I14.7 [Oryza sativa]
Length = 99
Score = 163 bits (412), Expect = 1e-39
Identities = 81/97 (83%), Positives = 88/97 (90%)
Query: 2 STGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGL 61
S GPGLESLVDQ ISVITNDGRNIVGTL+GFDQATNIILDESHERV+ST+EGVQ + LGL
Sbjct: 3 SAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVLGL 62
Query: 62 YIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
YIIRGDNISVVGE+DE+LD LD S +RA PLKPVIH
Sbjct: 63 YIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH 99
>UniRef100_Q8VYI0 At1g65700/F1E22_3 [Arabidopsis thaliana]
Length = 98
Score = 157 bits (396), Expect = 8e-38
Identities = 79/98 (80%), Positives = 86/98 (87%)
Query: 1 MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 60
M+ GLE+LVDQ ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ LG
Sbjct: 1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60
Query: 61 LYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
LYIIRGDNI V+GELDE+LD +LD SK+RA PLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
>UniRef100_Q9SHY4 F1E22.8 [Arabidopsis thaliana]
Length = 583
Score = 143 bits (361), Expect = 9e-34
Identities = 71/84 (84%), Positives = 76/84 (89%)
Query: 15 ISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRGDNISVVGE 74
ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ LGLYIIRGDNI V+GE
Sbjct: 500 ISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGE 559
Query: 75 LDEDLDKNLDKSKIRAQPLKPVIH 98
LDE+LD +LD SK+RA PLKPV+H
Sbjct: 560 LDEELDASLDFSKLRAHPLKPVVH 583
>UniRef100_Q7PZC3 ENSANGP00000020162 [Anopheles gambiae str. PEST]
Length = 95
Score = 127 bits (320), Expect = 5e-29
Identities = 58/93 (62%), Positives = 74/93 (79%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
GLES V+ +S+IT DGRN VGTLKGFDQ N+ILDESHERV+S G++ + LGL+IIR
Sbjct: 3 GLESYVNNTVSIITADGRNFVGTLKGFDQTVNVILDESHERVYSMTAGIEQVVLGLHIIR 62
Query: 66 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
GDNI+++G+LDE +D LD S IR PL+PV+H
Sbjct: 63 GDNIAIIGQLDESVDSKLDFSTIRGMPLEPVVH 95
>UniRef100_UPI0000438348 UPI0000438348 UniRef100 entry
Length = 96
Score = 127 bits (318), Expect = 8e-29
Identities = 59/98 (60%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Query: 1 MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 60
MST LES + + ++++T+DGR IVGTLKGFDQA N+ILDESHERVFS+ +GV+ + LG
Sbjct: 1 MSTA--LESYIHRTVAIVTSDGRMIVGTLKGFDQAINLILDESHERVFSSSQGVEQVVLG 58
Query: 61 LYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
LYI+RGDN++V+GE+DE+ D LD IRA+PL V+H
Sbjct: 59 LYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVVH 96
>UniRef100_UPI0000365500 UPI0000365500 UniRef100 entry
Length = 96
Score = 127 bits (318), Expect = 8e-29
Identities = 58/98 (59%), Positives = 79/98 (80%), Gaps = 2/98 (2%)
Query: 1 MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 60
MST LES +++ ++++T+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LG
Sbjct: 1 MSTA--LESYINRTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLG 58
Query: 61 LYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
LYI+RGDN++V+GE+DE+ D LD IRA+PL V+H
Sbjct: 59 LYIVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH 96
>UniRef100_UPI00003A9603 LSM8 protein [Homo sapiens]
Length = 96
Score = 125 bits (314), Expect = 2e-28
Identities = 56/92 (60%), Positives = 76/92 (81%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D LD IRA+PL V+H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVVH 96
>UniRef100_Q9W087 CG2021-PA [Drosophila melanogaster]
Length = 95
Score = 125 bits (314), Expect = 2e-28
Identities = 57/93 (61%), Positives = 73/93 (78%)
Query: 6 GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
GLES ++ +S+IT DGRN +GTLKGFDQ NII+DE HERVFST G++ I LGL+IIR
Sbjct: 3 GLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIR 62
Query: 66 GDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
GDNI+V+G +DE +D LD + IR +PL PV+H
Sbjct: 63 GDNIAVIGLIDETIDSRLDLANIRGEPLGPVVH 95
>UniRef100_O95777 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
Length = 95
Score = 124 bits (310), Expect = 7e-28
Identities = 56/92 (60%), Positives = 75/92 (80%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 4 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D LD IRA+PL V H
Sbjct: 64 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 95
>UniRef100_Q6NTS4 MGC82379 protein [Xenopus laevis]
Length = 96
Score = 122 bits (307), Expect = 2e-27
Identities = 55/92 (59%), Positives = 76/92 (81%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LE+ +++ ++VIT DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ + LGLYI+RG
Sbjct: 5 LENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
DN++V+GE+DE+ D +LD IRA+PL V++
Sbjct: 65 DNVAVIGEIDEETDSSLDLGNIRAEPLNSVVN 96
>UniRef100_UPI000032EAAB UPI000032EAAB UniRef100 entry
Length = 99
Score = 122 bits (305), Expect = 3e-27
Identities = 58/101 (57%), Positives = 79/101 (77%), Gaps = 5/101 (4%)
Query: 1 MSTGPGLESLVDQQ---ISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLI 57
MST LES +++ ++++T+DGR IVGTLKGFDQ N+ILDESHERVFS+ +GV+ +
Sbjct: 1 MSTA--LESYINRDSGTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQV 58
Query: 58 ALGLYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
LGLYI+RGDN++V+GE+DE+ D LD IRA+PL V+H
Sbjct: 59 VLGLYIVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH 99
>UniRef100_Q61U50 Hypothetical protein CBG05470 [Caenorhabditis briggsae]
Length = 98
Score = 108 bits (270), Expect = 3e-23
Identities = 45/90 (50%), Positives = 71/90 (78%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
LES +++ ++V+T DGR IVG LKGFDQ N++++++HER +S +GV + LGLYIIRG
Sbjct: 5 LESYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERCYSETDGVLITPLGLYIIRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPV 96
+N++++GE+DE+LDK +D ++A PL P+
Sbjct: 65 ENVAIIGEIDEELDKRVDLENVKAAPLAPI 94
>UniRef100_Q95XD4 Lsm sm-like protein protein 8 [Caenorhabditis elegans]
Length = 98
Score = 105 bits (263), Expect = 2e-22
Identities = 44/90 (48%), Positives = 70/90 (76%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L++ +++ ++V+T DGR IVG LKGFDQ N++++++HER +S EGV LGLYIIRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPV 96
+N++++GE+DE+LDK +D ++A PL P+
Sbjct: 65 ENVAIIGEIDEELDKRVDLENVKAAPLAPI 94
>UniRef100_Q8IBC4 U6 snRNA-associated sm-like protein, putative [Plasmodium
falciparum]
Length = 94
Score = 103 bits (258), Expect = 8e-22
Identities = 50/90 (55%), Positives = 68/90 (75%), Gaps = 2/90 (2%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
+ES ++ +I VITND R G LKGFDQ TNIIL HER++ KE ++ I+LG+YIIRG
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIY--KESMEKISLGVYIIRG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPV 96
D ++++GE+DED+DKN+ KI+ Q LKPV
Sbjct: 64 DTVTLIGEIDEDVDKNILHQKIKPQMLKPV 93
>UniRef100_UPI000042CB0E UPI000042CB0E UniRef100 entry
Length = 95
Score = 100 bits (250), Expect = 6e-21
Identities = 48/87 (55%), Positives = 65/87 (74%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
+ES VD + VI DGR IVG LKG+D TN+IL +S ER FS +GV++I LGLY+I+G
Sbjct: 4 IESYVDHTVQVILQDGRVIVGKLKGYDPRTNLILSDSVEREFSMDQGVEMIPLGLYVIKG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPL 93
DN++VV ELDE+ D ++ + IRA+PL
Sbjct: 64 DNVAVVAELDEEKDSTINYNDIRAEPL 90
>UniRef100_O74483 U6 snRNA-associated Sm-like protein LSm8 [Schizosaccharomyces
pombe]
Length = 94
Score = 95.9 bits (237), Expect = 2e-19
Identities = 40/92 (43%), Positives = 69/92 (74%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L ++Q++ VITNDGR ++G+LKGFD TN+IL +S ER+ S + ++ I LG+Y++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPLKPVIH 98
+N+++VG ++E+LD ++ +KIR + + V+H
Sbjct: 63 ENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94
>UniRef100_Q6CFJ1 Similar to sp|O95777 Homo sapiens U6 snRNA-associated Sm-like
protein LSm8 [Yarrowia lipolytica]
Length = 97
Score = 82.8 bits (203), Expect = 2e-15
Identities = 38/87 (43%), Positives = 61/87 (69%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
L +++ ++VIT DGR I+G L+G+DQATN+IL + ERV + E +++ LGLY++RG
Sbjct: 4 LSGYINKPVTVITTDGRLILGILQGYDQATNVILSNTRERVITPDEPTEVVDLGLYMLRG 63
Query: 67 DNISVVGELDEDLDKNLDKSKIRAQPL 93
D I+ VGE D +LD ++ ++R + L
Sbjct: 64 DCIACVGETDLELDGSIQWGEVRGEEL 90
>UniRef100_UPI0000467A43 UPI0000467A43 UniRef100 entry
Length = 65
Score = 75.1 bits (183), Expect = 4e-13
Identities = 33/65 (50%), Positives = 54/65 (82%), Gaps = 2/65 (3%)
Query: 33 DQATNIILDESHERVFSTKEGVQLIALGLYIIRGDNISVVGELDEDLDKNLDKSKIRAQP 92
DQ TNIIL +ER++ KE ++ I+LG+YIIRGDN++++GE+DE++D+N+ ++KI+ +
Sbjct: 1 DQTTNIILGNCYERIY--KESLEKISLGIYIIRGDNVTLIGEIDEEVDRNILQNKIKPEM 58
Query: 93 LKPVI 97
LKPV+
Sbjct: 59 LKPVM 63
>UniRef100_Q6MYW7 U6 snrna-associated sm-like protein, putative [Aspergillus
fumigatus]
Length = 98
Score = 74.3 bits (181), Expect = 6e-13
Identities = 35/91 (38%), Positives = 62/91 (67%), Gaps = 3/91 (3%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQ---LIALGLYI 63
L S +++++ ++T DGR ++GTL DQ TN++L ++ ER+ T + + I GLY+
Sbjct: 3 LHSYINKKVLILTVDGRTLLGTLLSTDQLTNLVLLDTIERIIRTPDDPEPSSQIEHGLYL 62
Query: 64 IRGDNISVVGELDEDLDKNLDKSKIRAQPLK 94
IRGDN+ + GE+DE +D ++D SK++ + +K
Sbjct: 63 IRGDNVVLCGEVDEAIDNDIDWSKVKGEVVK 93
>UniRef100_UPI000021BE43 UPI000021BE43 UniRef100 entry
Length = 101
Score = 65.9 bits (159), Expect = 2e-10
Identities = 36/91 (39%), Positives = 56/91 (60%), Gaps = 4/91 (4%)
Query: 7 LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEG----VQLIALGLY 62
L S VD+++ ++T DGR ++GTL D NIIL ER + +G V ++G
Sbjct: 5 LNSYVDKRVVIMTTDGRMLIGTLINSDNQANIILYNVTERHIAPADGDEDSVDRPSVGTE 64
Query: 63 IIRGDNISVVGELDEDLDKNLDKSKIRAQPL 93
IIRG I VVG +DE+L+ ++D +K+R +P+
Sbjct: 65 IIRGSTILVVGLVDEELEGSIDWTKVRGEPI 95
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.315 0.138 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,144,374
Number of Sequences: 2790947
Number of extensions: 5969554
Number of successful extensions: 13966
Number of sequences better than 10.0: 311
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 13690
Number of HSP's gapped (non-prelim): 317
length of query: 98
length of database: 848,049,833
effective HSP length: 74
effective length of query: 24
effective length of database: 641,519,755
effective search space: 15396474120
effective search space used: 15396474120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0048.13