BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0044b.1
         (221 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_UPI000023E2F2 UPI000023E2F2 UniRef100 entry                  37  0.37
UniRef100_UPI000021E5EA UPI000021E5EA UniRef100 entry                  35  1.8
UniRef100_UPI00004192BF UPI00004192BF UniRef100 entry                  34  3.1
UniRef100_Q81HF5 Oligopeptide-binding protein oppA [Bacillus cer...    34  3.1
UniRef100_Q63FG5 Oligopeptide ABC transporter, solute-binding pr...    34  3.1
UniRef100_UPI000035F726 UPI000035F726 UniRef100 entry                  33  4.1
UniRef100_Q61HD2 Hypothetical protein CBG10785 [Caenorhabditis b...    33  5.3
UniRef100_Q95QE4 Coenzyme q (Ubiquinone) biosynthesis protein 2,...    33  5.3
UniRef100_Q95QE3 Coenzyme q (Ubiquinone) biosynthesis protein 2,...    33  5.3
UniRef100_Q8I7J4 Coenzyme q (Ubiquinone) biosynthesis protein 2,...    33  5.3
UniRef100_Q8I7J3 Coenzyme q (Ubiquinone) biosynthesis protein 2,...    33  5.3
UniRef100_Q8XS40 PROBABLE PEPTIDE SYNTHETASE PROTEIN [Ralstonia ...    33  7.0
UniRef100_Q6HMX9 Oligopeptide ABC transporter, solute-binding pr...    33  7.0
UniRef100_UPI000036E41F UPI000036E41F UniRef100 entry                  32  9.1
UniRef100_UPI000036E41C UPI000036E41C UniRef100 entry                  32  9.1
UniRef100_Q73CY2 ABC transporter, substrate-binding protein, put...    32  9.1

>UniRef100_UPI000023E2F2 UPI000023E2F2 UniRef100 entry
          Length = 848

 Score = 37.0 bits (84), Expect = 0.37
 Identities = 35/114 (30%), Positives = 47/114 (40%), Gaps = 10/114 (8%)

Query: 106 PPKILPETQVRYATRPIMLWFLSLFVDASV---SQLEGVCSENTHFKGARDT---HLKDM 159
           PP+    T V YA   I    LSL    S+   ++L G  +E TH     +    H   +
Sbjct: 643 PPEAFAATVVSYAGLHIPTLVLSLHSGLSIKLEAKLRGSDTEQTHMTDTNNPMIWHWLLV 702

Query: 160 PRTKNLNL---PPANRSSHGSRIPPRHRASPTHSQCVFVWHSEHEVQTATVTQF 210
             T  + L   P   R + GS IP R R   T S+C   WH   E    TV ++
Sbjct: 703 STTDVIGLETGPMEFRLARGSSIPSR-RTDKTRSRCCKDWHEAGETIVITVGKY 755


>UniRef100_UPI000021E5EA UPI000021E5EA UniRef100 entry
          Length = 426

 Score = 34.7 bits (78), Expect = 1.8
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 20/146 (13%)

Query: 68  HVIYRMNQRRKHNGDPAN--TATPQPSGVAATPIATFYCQPPKILPETQVRYATRPIMLW 125
           H I+R+     H G P +  T  P P     +P  + Y Q P  LP T  R  +      
Sbjct: 21  HTIHRLPSLTLHTGSPPSHCTQVPLPHTAHRSP-PSHYTQAP--LPHTAHRVPS------ 71

Query: 126 FLSLFVDASVSQLEGVCSENT-HFKGARDTHLKDMPRTKNLNLPPANRSSHGSRIP---P 181
            L+L+  +  S    V   +T H   +   H    P + +   PP    SH +++P    
Sbjct: 72  -LTLYTGSPPSHCTQVPLPHTAHRFPSLTLHTGSPPSSLHTGSPP----SHCTQVPLPHT 126

Query: 182 RHRASPTHSQCVFVWHSEHEVQTATV 207
            HR+ P+H     + H+ H V + T+
Sbjct: 127 AHRSPPSHYTQAPLPHTAHRVPSLTL 152


>UniRef100_UPI00004192BF UPI00004192BF UniRef100 entry
          Length = 1358

 Score = 33.9 bits (76), Expect = 3.1
 Identities = 30/113 (26%), Positives = 40/113 (34%), Gaps = 11/113 (9%)

Query: 92  SGVAATPIATFYCQPPKILPETQVRYATRPIMLWFLSLFVDASVSQLEGVCSENTHFKGA 151
           SG    P A+F  +PPK +   Q RY           L     V ++ G C+       A
Sbjct: 108 SGRTLLPEASFRPEPPKPITADQRRYK---------DLITGLKVKEVRGGCARR-GTNAA 157

Query: 152 RDTHLKDMPRTKNLNLPPANRSSHGSRIPPRHRASPTHSQCVFVWHSEHEVQT 204
              H    PR +  + P         R P   RA+  H    +  H  H VQT
Sbjct: 158 LGFHAPRFPRAERRSPPSTAGVGPDGRDPRVQRATVAHPTATYS-HERHAVQT 209


>UniRef100_Q81HF5 Oligopeptide-binding protein oppA [Bacillus cereus]
          Length = 579

 Score = 33.9 bits (76), Expect = 3.1
 Identities = 22/58 (37%), Positives = 28/58 (47%), Gaps = 5/58 (8%)

Query: 13  PKFAFLHGVSDAQLNIIPKELQISNRQYV-----LCFTCSEFNIFLCTRSSILKERSL 65
           P   FLH VS  QL I+P++  I N  Y+          SE NI L   +   KER+L
Sbjct: 246 PNLFFLHYVSSMQLAILPRDTSIQNHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERAL 303


>UniRef100_Q63FG5 Oligopeptide ABC transporter, solute-binding protein [Bacillus
           cereus]
          Length = 579

 Score = 33.9 bits (76), Expect = 3.1
 Identities = 22/58 (37%), Positives = 28/58 (47%), Gaps = 5/58 (8%)

Query: 13  PKFAFLHGVSDAQLNIIPKELQISNRQYV-----LCFTCSEFNIFLCTRSSILKERSL 65
           P   FLH VS  QL I+P+ + I N  Y+          SE NI L   +   KER+L
Sbjct: 246 PNLFFLHYVSSIQLAILPRNVSIENHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERAL 303


>UniRef100_UPI000035F726 UPI000035F726 UniRef100 entry
          Length = 1308

 Score = 33.5 bits (75), Expect = 4.1
 Identities = 41/163 (25%), Positives = 66/163 (40%), Gaps = 13/163 (7%)

Query: 10  DESPKFAFLHGVSDAQLNIIPKELQISNRQYVLCFTCSEFNIFLCTRSSILKERSLRIHV 69
           +ESP   F H      L+I  K  + + +   LC  C   ++ LC  S+ L   S  ++V
Sbjct: 827 EESPTDRFRH------LHIYYKNYKCTIKCDHLCNYCKSKSVKLCLFSAQLLVVSSCLYV 880

Query: 70  IYRMNQRRKHNGDPANTATPQPSGVAATPIATFYCQPPKILPETQVRYATRPIMLWFLSL 129
                ++R HNG        QPS    +P  +     P       V Y++        + 
Sbjct: 881 GSNEKEKRNHNGYTNLPDVVQPS---HSPTDSASHSSPGKDSVYDVSYSSGKSS---FTT 934

Query: 130 FVDASVSQLEGVCSENTHFKGARDTHLK-DMPRTKNLNLPPAN 171
           FVD  + Q  G   +N    G+R   LK ++ +   +N+ P N
Sbjct: 935 FVDLGMYQSPGGTGDNMSLSGSRFEQLKMEVRKGSMVNVNPTN 977


>UniRef100_Q61HD2 Hypothetical protein CBG10785 [Caenorhabditis briggsae]
          Length = 739

 Score = 33.1 bits (74), Expect = 5.3
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 13/87 (14%)

Query: 105 QPPKILPETQVRYATRPIMLWFLSLFVDAS------------VSQLEGVCSENTHFKGAR 152
           QPP+++P  Q R  T P + +F    ++A+             +QL+   S NT      
Sbjct: 434 QPPRVMPSPQTRVQTFPFVPFFTPPSLNATDMSTQFNLANILSAQLKNDSSPNTDTSSVE 493

Query: 153 DTHLKDMPRTKNLNLPPANRSSHGSRI 179
           +  ++D P  K  +L P+N S   S +
Sbjct: 494 EKVIRDDP-PKMASLSPSNSSESSSSV 519


>UniRef100_Q95QE4 Coenzyme q (Ubiquinone) biosynthesis protein 2, isoform b
           [Caenorhabditis elegans]
          Length = 427

 Score = 33.1 bits (74), Expect = 5.3
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 53  LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
           + TRS  +  RS  I+ I   N    ++ D +     +T+T QP  +  T  +     PP
Sbjct: 1   MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60

Query: 108 KILPETQVRYATRPIMLWFL 127
            + P  Q+    +PI  W L
Sbjct: 61  NLKPYLQLMRVDKPIGTWLL 80


>UniRef100_Q95QE3 Coenzyme q (Ubiquinone) biosynthesis protein 2, isoform a
           [Caenorhabditis elegans]
          Length = 356

 Score = 33.1 bits (74), Expect = 5.3
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 53  LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
           + TRS  +  RS  I+ I   N    ++ D +     +T+T QP  +  T  +     PP
Sbjct: 1   MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60

Query: 108 KILPETQVRYATRPIMLWFL 127
            + P  Q+    +PI  W L
Sbjct: 61  NLKPYLQLMRVDKPIGTWLL 80


>UniRef100_Q8I7J4 Coenzyme q (Ubiquinone) biosynthesis protein 2, isoform e
           [Caenorhabditis elegans]
          Length = 370

 Score = 33.1 bits (74), Expect = 5.3
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 53  LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
           + TRS  +  RS  I+ I   N    ++ D +     +T+T QP  +  T  +     PP
Sbjct: 1   MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60

Query: 108 KILPETQVRYATRPIMLWFL 127
            + P  Q+    +PI  W L
Sbjct: 61  NLKPYLQLMRVDKPIGTWLL 80


>UniRef100_Q8I7J3 Coenzyme q (Ubiquinone) biosynthesis protein 2, isoform c
           [Caenorhabditis elegans]
          Length = 216

 Score = 33.1 bits (74), Expect = 5.3
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 53  LCTRSSILKERSLRIHVIYRMNQRRKHNGDPA-----NTATPQPSGVAATPIATFYCQPP 107
           + TRS  +  RS  I+ I   N    ++ D +     +T+T QP  +  T  +     PP
Sbjct: 1   MITRSIGIARRSNSINCIVGSNTSTSYSLDESTKRWISTSTKQPMSLIPTASSLVASSPP 60

Query: 108 KILPETQVRYATRPIMLWFL 127
            + P  Q+    +PI  W L
Sbjct: 61  NLKPYLQLMRVDKPIGTWLL 80


>UniRef100_Q8XS40 PROBABLE PEPTIDE SYNTHETASE PROTEIN [Ralstonia solanacearum]
          Length = 6889

 Score = 32.7 bits (73), Expect = 7.0
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 87   ATPQPSGVAATP---IATFYCQPPKILPETQVRYATRPIMLWFLSLFVDASVSQLE---- 139
            +T QP GVA T     +  Y Q  +    +Q R      +L F S+  DA+VS++     
Sbjct: 4362 STGQPKGVAVTHQGVASLVYSQCERFGVSSQSR------VLQFASISFDAAVSEIGMGLL 4415

Query: 140  -GVC----SENTHFKGARDTHLKDMPRTKNLNLPPA 170
             G C           GA  THL D  R  ++ LPPA
Sbjct: 4416 CGACLVLAPAQALMPGAALTHLLDRERITHVTLPPA 4451


>UniRef100_Q6HMX9 Oligopeptide ABC transporter, solute-binding protein [Bacillus
           thuringiensis]
          Length = 579

 Score = 32.7 bits (73), Expect = 7.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 13  PKFAFLHGVSDAQLNIIPKELQISNRQYVLC--FTCSEF---NIFLCTRSSILKERSL 65
           P   FLH VS  QL I+P+++ I N  Y+    F  + +   NI L   +   KER+L
Sbjct: 246 PNLFFLHYVSSIQLAILPRDVSIENHHYIGTGPFKLAHYSADNIVLEAFTHYFKERAL 303


>UniRef100_UPI000036E41F UPI000036E41F UniRef100 entry
          Length = 339

 Score = 32.3 bits (72), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 2/42 (4%)

Query: 125 WFLSLFVDASVSQLEGVCSENTHFKGARDTHLKDMPRTKNLN 166
           WFL   ++A+V   E  C E   F+  +D+    +PRT  LN
Sbjct: 246 WFLKQEINAAVEHAENPCKEEPRFQNEQDSSC--LPRTSQLN 285


>UniRef100_UPI000036E41C UPI000036E41C UniRef100 entry
          Length = 1065

 Score = 32.3 bits (72), Expect = 9.1
 Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 2/42 (4%)

Query: 125  WFLSLFVDASVSQLEGVCSENTHFKGARDTHLKDMPRTKNLN 166
            WFL   ++A+V   E  C E   F+  +D+    +PRT  LN
Sbjct: 972  WFLKQEINAAVEHAENPCKEEPRFQNEQDSSC--LPRTSQLN 1011


>UniRef100_Q73CY2 ABC transporter, substrate-binding protein, putative [Bacillus
           cereus]
          Length = 579

 Score = 32.3 bits (72), Expect = 9.1
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 13  PKFAFLHGVSDAQLNIIPKELQISNRQYV-----LCFTCSEFNIFLCTRSSILKERSL 65
           P   FLH VS  QL I+P+++ I    Y+          SE NI L   +   KER+L
Sbjct: 246 PNLFFLHYVSSIQLAILPRDVSIQTHHYIGTGPFKLAHYSEDNIVLEAFTHYFKERAL 303


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.323    0.135    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,690,228
Number of Sequences: 2790947
Number of extensions: 15010281
Number of successful extensions: 32819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 32814
Number of HSP's gapped (non-prelim): 17
length of query: 221
length of database: 848,049,833
effective HSP length: 123
effective length of query: 98
effective length of database: 504,763,352
effective search space: 49466808496
effective search space used: 49466808496
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 72 (32.3 bits)