BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0042.15
         (352 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q93YH8 HMG I/Y like protein [Glycine max]                   325  2e-87
UniRef100_Q9ZRM3 HMR1 protein [Antirrhinum majus]                     167  4e-40
UniRef100_Q9LSK7 Arabidopsis thaliana genomic DNA, chromosome 3,...   140  5e-32
UniRef100_Q9C6X5 Hypothetical protein F9P7.3 [Arabidopsis thaliana]   137  4e-31
UniRef100_Q9LP61 T1N15.25 [Arabidopsis thaliana]                      136  1e-30
UniRef100_Q42461 High mobility group protein [Canavalia gladiata]     119  1e-25
UniRef100_Q8H3M0 Putative high mobility group I/Y [Oryza sativa]      116  1e-24
UniRef100_Q9FER8 HMGI/Y protein [Zea mays]                            115  1e-24
UniRef100_Q9FYS5 High mobility group I/Y-2 [Zea mays]                 114  3e-24
UniRef100_Q9S7Z7 HMGI/Y protein [Zea mays]                            114  4e-24
UniRef100_Q676Y8 High mobility group I/Y-2 [Hyacinthus orientalis]    113  7e-24
UniRef100_Q42492 High mobility group protein [Canavalia gladiata]     113  9e-24
UniRef100_Q40451 DNA-binding protein [Nicotiana tabacum]              112  1e-23
UniRef100_Q43877 HMGI/Y [Pisum sativum]                               108  2e-22
UniRef100_Q9SEH2 High mobility group protein I/Y [Brassica napus]     104  4e-21
UniRef100_Q38778 DNA-binding protein [Avena sativa]                   102  1e-20
UniRef100_Q43600 PF1 protein [Oryza sativa]                           102  2e-20
UniRef100_P92954 HMG-I/Y protein [Arabidopsis thaliana]               102  2e-20
UniRef100_Q43386 HMG-I/Y protein [Arabidopsis thaliana]               101  4e-20
UniRef100_Q40725 AT1 protein [Oryza sativa]                           101  4e-20

>UniRef100_Q93YH8 HMG I/Y like protein [Glycine max]
          Length = 413

 Score =  325 bits (832), Expect = 2e-87
 Identities = 216/429 (50%), Positives = 249/429 (57%), Gaps = 107/429 (24%)

Query: 9   PPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAK 68
           PPPP T VPFT E  NH   ++     +   NHPPY EMIY AI ALKEKDGSSK AI K
Sbjct: 7   PPPPATTVPFTVEPSNHVTPAD-----NTNTNHPPYDEMIYTAIGALKEKDGSSKRAIGK 61

Query: 69  YIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSY---------------------KL 107
           Y+E+ Y DLPP HS LLTHHL RLK  GLLI++KKSY                     KL
Sbjct: 62  YMEQVYKDLPPTHSALLTHHLNRLKSAGLLILVKKSYKLPGSDPLPVLQAQKPRGRPPKL 121

Query: 108 PSSLPSDIT------------QNAAQ--------------------PVRRGRPP---RSG 132
            S   +++T            Q+A +                    P RRGRPP   RS 
Sbjct: 122 KSQPNTELTWPALALNDNPALQSAKRGPGRPKKIAGPVGVSPGPMVPGRRGRPPGTGRSK 181

Query: 133 IPKRRGRPPKPKS---LSNGLKRRP---PKHQLQATVIPFADP-----SLAQPPVPV--- 178
           +PKR GRPPKPKS   +S+GLKRRP   PK +    VIPFA P        QP VP    
Sbjct: 182 LPKRPGRPPKPKSVSAISSGLKRRPGRPPKAESNVNVIPFAAPVAPGLPTVQPIVPTASV 241

Query: 179 --GSPRPRGRPRKNAAALPPP--HAVGGVDSS---------LMVPGRPQKLAVRGRPKNP 225
             GSPRPRGRP+K  A    P   +VGG             L+ PGRPQKLAV GRPKNP
Sbjct: 242 PNGSPRPRGRPKKIVAGAGAPALSSVGGAPRGRGRPRGVLPLVRPGRPQKLAV-GRPKNP 300

Query: 226 AGRPVGRPKGTTSANI-AQRIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAI 284
           A RPVGRPKG+T+A I A + AN++LRRKLE+FQSKVKESL  LKPYF+H SPV AIAAI
Sbjct: 301 ARRPVGRPKGSTAAAITAHKAANDDLRRKLEHFQSKVKESLGTLKPYFNHESPVTAIAAI 360

Query: 285 QELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQPLPEPQITYQQQHLQTQ-LHQLFQ 343
           QELE+++T DLKAPLRD   Q              QP P+PQ+ Y+QQ+ Q Q L Q F 
Sbjct: 361 QELEVLSTLDLKAPLRDETHQ--------------QPQPQPQV-YEQQYPQPQPLLQQF- 404

Query: 344 FQPHASFPS 352
           FQPH S PS
Sbjct: 405 FQPHTSAPS 413


>UniRef100_Q9ZRM3 HMR1 protein [Antirrhinum majus]
          Length = 400

 Score =  167 bits (423), Expect = 4e-40
 Identities = 142/386 (36%), Positives = 185/386 (47%), Gaps = 91/386 (23%)

Query: 10  PPPPTAVPFTQ-EAINHAPDSNIPINSSAPA-NHPPYAEMIYRAIEALKEKDGSSKTAIA 67
           PP P  VP T  EA    P +N P    APA NHPPYAEMI  AI AL E++GSSK AIA
Sbjct: 19  PPVPVPVPTTTAEAPIPNPVAN-PTPKRAPAHNHPPYAEMITSAISALNERNGSSKRAIA 77

Query: 68  KYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSD--ITQNAAQPVRR 125
           KY+E  +T LP  H++LL  HLKRLKDTG ++M+K SYKLP S PS+  ++ + +   R 
Sbjct: 78  KYVESNFTGLPATHASLLATHLKRLKDTGDILMVKHSYKLPRSAPSNGAVSADPSTKRRP 137

Query: 126 GRP----------------PRSGI-------------------------PKRRGRPPKPK 144
           GRP                P+  I                         P+ RGRPPK  
Sbjct: 138 GRPRKDNPQNLQAAVPVFAPQVDINAAPEIAVEQGSVYVELGPINGPSPPRGRGRPPKQG 197

Query: 145 SLSNGLKRRPPKHQL-----QATVIPFADPSLAQPPVPVGSP-RPRGRPRK-------NA 191
               G + RPPK  +      A  +P A  +   P   V  P RPRGRP K        A
Sbjct: 198 GRGRG-RGRPPKTAVAPPAAAAAAVPGAPAAAVAPAAQVKGPGRPRGRPPKPINVVEGGA 256

Query: 192 AALPPPHAVGGV----DSSLMV------PGRPQK---------LAVRGRPKNP---AGRP 229
            A P     GGV      S++        GRP K         L    +PK P   +G+P
Sbjct: 257 VAAPVAVPAGGVLPVAGGSVVAGVAPKRRGRPPKAGGEAKKPRLQTVVKPKTPRKLSGKP 316

Query: 230 VGRPKGTTSANIAQ------RIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAA 283
           +GRPK   +A ++Q       +A  +L+ KLE  QS+VK + +V+KP     +   A+ A
Sbjct: 317 LGRPKKNAAAAVSQVADTQLLVAYLDLKGKLENLQSRVKLAANVIKPCL---TTEDAVNA 373

Query: 284 IQELEIVATSDLKAPLRDVPSQKIPE 309
            QELE++AT +  AP    P Q  P+
Sbjct: 374 FQELEMLATLNTTAPPNVQPQQPQPQ 399


>UniRef100_Q9LSK7 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBG14
           [Arabidopsis thaliana]
          Length = 480

 Score =  140 bits (353), Expect = 5e-32
 Identities = 109/277 (39%), Positives = 141/277 (50%), Gaps = 49/277 (17%)

Query: 8   PPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIA 67
           P P   T +P  Q     +P  ++P        HPPY+EMI  AI AL E DGSSK AI+
Sbjct: 41  PQPQTQTQIPQPQ-MFQLSPHVSMP--------HPPYSEMICAAIAALNEPDGSSKMAIS 91

Query: 68  KYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKL--PSSLPSDITQNAAQPVRR 125
           +YIE  YT L  AH+ LLTHHLK LK +G+L M+KKSYK+   S+ P+ +   AA   + 
Sbjct: 92  RYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQG 151

Query: 126 GRPPRSGI------------------PKRRGRPPKPK--SLSNGLKRRPPKHQLQATVIP 165
              PRS I                   + RGRPPKPK  S    L++ PP +Q+QA   P
Sbjct: 152 LDVPRSEILHSSNNDPMASGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQP 211

Query: 166 FADPSLAQPPVPVGSP------RPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVR 219
             +    Q PVPV +P      R  GRPRKN +A P    +  V +S+M       +  R
Sbjct: 212 IWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSAAPATAPI--VQASVMA----GIMKRR 265

Query: 220 GRPKNPAGRPVGR---PKGTTS-ANIAQRIANENLRR 252
           GRP  P  R  GR   PK  +S A++   +AN   RR
Sbjct: 266 GRP--PGRRAAGRQRKPKSVSSTASVYPYVANGARRR 300



 Score = 70.5 bits (171), Expect = 7e-11
 Identities = 67/258 (25%), Positives = 116/258 (43%), Gaps = 48/258 (18%)

Query: 91  RLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRS---------------GIPK 135
           +++  G  I  ++  + P  +P+ +T++A +   R R   S               GI K
Sbjct: 204 QVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPRKNGSAAPATAPIVQASVMAGIMK 263

Query: 136 RRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRK--NAAA 193
           RRGRPP  ++   G +R+P      A+V P+               R RGRPR+  + ++
Sbjct: 264 RRGRPPGRRAA--GRQRKPKSVSSTASVYPYV----------ANGARRRGRPRRVVDPSS 311

Query: 194 LPPPHAVGGVDSSLMVPG------RPQKLA-----VRGRPKNPAGRPVGRPKGTTSANIA 242
           +     VGG + + + PG      RP K+      +  +PK   GRPVGRP+   ++   
Sbjct: 312 IVSVAPVGGENVAAVAPGMKRGRGRPPKIGGVISRLIMKPKRGRGRPVGRPRKIGTSVTT 371

Query: 243 QRIANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDV 302
               +  L++K + FQ KVKE + VLK      +    + AI++LE +  ++   P    
Sbjct: 372 GTQDSGELKKKFDIFQEKVKEIVKVLKDGVTSENQA-VVQAIKDLEALTVTETVEP---- 426

Query: 303 PSQKIPEQLPLQEHLLPQ 320
              ++ E++  +E   PQ
Sbjct: 427 ---QVMEEVQPEETAAPQ 441


>UniRef100_Q9C6X5 Hypothetical protein F9P7.3 [Arabidopsis thaliana]
          Length = 332

 Score =  137 bits (345), Expect = 4e-31
 Identities = 112/313 (35%), Positives = 149/313 (46%), Gaps = 84/313 (26%)

Query: 7   PPPPPPPTAVPFTQE----AINH---------APDSNIPINSSAPA-------------- 39
           PPPP   +  PFT      + NH         AP +NI +  +AP               
Sbjct: 14  PPPPQFTSFPPFTNTNPFASPNHPFFTGPTAVAPPNNIHLYQAAPPQQPQTSPVPPHPSI 73

Query: 40  NHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLI 99
           +HPPY++MI  AI AL E DGSSK AI++YIE  YT +P AH  LLTHHLK LK +G+L+
Sbjct: 74  SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133

Query: 100 MLKKSYKLPSSLP---------------SDITQNAAQ----PVRRGRPPRSGIPKRRGRP 140
           M+KKSYKL S+ P               SD   N  Q    PV     P++ I + RGRP
Sbjct: 134 MVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQT-IKRGRGRP 192

Query: 141 PK-------PKSLSNGL---------KRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPR 184
           PK       P+ L+NG            RP + Q+Q   +P       QP  PV   RP 
Sbjct: 193 PKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPL------QPQQPV--KRPP 244

Query: 185 GRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKG----TTSAN 240
           GRPRK+  +         V  +  V G  + +  RGRP  P+GR  GR +     +  A+
Sbjct: 245 GRPRKDGTS-------PTVKPAASVSGGVETVKRRGRP--PSGRAAGRERKPIVVSAPAS 295

Query: 241 IAQRIANENLRRK 253
           +   +AN  +RR+
Sbjct: 296 VFPYVANGGVRRR 308


>UniRef100_Q9LP61 T1N15.25 [Arabidopsis thaliana]
          Length = 594

 Score =  136 bits (342), Expect = 1e-30
 Identities = 104/286 (36%), Positives = 140/286 (48%), Gaps = 58/286 (20%)

Query: 7   PPPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAI 66
           P    PP  +   Q A    P ++ P+      +HPPY++MI  AI AL E DGSSK AI
Sbjct: 157 PTAVAPPNNIHLYQAAPPQQPQTS-PVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAI 215

Query: 67  AKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLP-------------- 112
           ++YIE  YT +P AH  LLTHHLK LK +G+L+M+KKSYKL S+ P              
Sbjct: 216 SRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPP 275

Query: 113 -SDITQNAAQ----PVRRGRPPRSGIPKRRGRPPK-------PKSLSNGL---------K 151
            SD   N  Q    PV     P++ I + RGRPPK       P+ L+NG           
Sbjct: 276 RSDFIVNENQPLPDPVLASSTPQT-IKRGRGRPPKAKPDVVQPQPLTNGKLTWEQSELPV 334

Query: 152 RRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPG 211
            RP + Q+Q   +P       QP  PV   RP GRPRK+  +         V  +  V G
Sbjct: 335 SRPEEIQIQPPQLPL------QPQQPV--KRPPGRPRKDGTS-------PTVKPAASVSG 379

Query: 212 RPQKLAVRGRPKNPAGRPVGRPKG----TTSANIAQRIANENLRRK 253
             + +  RGRP  P+GR  GR +     +  A++   +AN  +RR+
Sbjct: 380 GVETVKRRGRP--PSGRAAGRERKPIVVSAPASVFPYVANGGVRRR 423



 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 96/371 (25%), Positives = 154/371 (40%), Gaps = 77/371 (20%)

Query: 8   PPPPPPTAVPFTQEAINHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIA 67
           PPPPPPT+V  + E     P S+  +N + P   P  A    + I+  + +   +K  + 
Sbjct: 260 PPPPPPTSVAPSLEP----PRSDFIVNENQPLPDPVLASSTPQTIKRGRGRPPKAKPDVV 315

Query: 68  KYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRR-- 125
           +                LT+     + + L +   +  ++    P  +     QPV+R  
Sbjct: 316 Q-------------PQPLTNGKLTWEQSELPVSRPEEIQIQ---PPQLPLQPQQPVKRPP 359

Query: 126 GRPPRSGIP----------------KRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADP 169
           GRP + G                  KRRGRPP  ++   G +R+P      A+V P+   
Sbjct: 360 GRPRKDGTSPTVKPAASVSGGVETVKRRGRPPSGRAA--GRERKPIVVSAPASVFPY--- 414

Query: 170 SLAQPPVPVGSPRPRGRPRK------NAAALPPPHAV----GGVDSSLMVPGRPQKLAVR 219
                 V  G  R RGRP++      ++ A PPP       GG + ++   GR +   + 
Sbjct: 415 ------VANGGVRRRGRPKRVDAGGASSVAPPPPPPTNVESGGEEVAVKKRGRGRPPKIG 468

Query: 220 G---RPKNP------AGRPVGRP-KGTTSANIAQRIANE--NLRRKLEYFQSKVKESLDV 267
           G   +P  P       G+PVGRP K   S   + R   +   L++K E FQ++ K+ + V
Sbjct: 469 GVIRKPMKPMRSFARTGKPVGRPRKNAVSVGASGRQDGDYGELKKKFELFQARAKDIVIV 528

Query: 268 LKPYFDHASPVPAIAAIQELEIVATSDLKAPLRDVPSQKIPEQLPLQEHLLPQPLPEPQI 327
           LK     +     + AIQ+LE +A +       + P      QLP +EHL  +P  E Q 
Sbjct: 529 LKSEIGGSGNQAVVQAIQDLEGIAET------TNEPKHMEEVQLPDEEHLETEPEAEGQG 582

Query: 328 TYQQQHLQTQL 338
             + + +Q  L
Sbjct: 583 QTEAEAMQEAL 593


>UniRef100_Q42461 High mobility group protein [Canavalia gladiata]
          Length = 178

 Score =  119 bits (299), Expect = 1e-25
 Identities = 77/188 (40%), Positives = 101/188 (52%), Gaps = 35/188 (18%)

Query: 38  PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
           P + PPY EM+ +A++AL E  GS+K+AI+KYIE  Y +LP  H+TLL HHL ++KD+G 
Sbjct: 9   PPSLPPYPEMVMKALDALNEPSGSNKSAISKYIESTYGELPDGHATLLAHHLNKMKDSGE 68

Query: 98  LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRG---RPPKPKSLSNGLKRRP 154
           L+ LK +Y  P         NA     RGRPP+  +P   G    PP+P+        RP
Sbjct: 69  LVFLKNNYMKPD-------PNAPPKRGRGRPPKPKVPLPPGTVLSPPRPRG-------RP 114

Query: 155 PKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQ 214
           PK        P A P   +  V  GS RPRGRP+K A +   P AV     + +  GRP 
Sbjct: 115 PKD-------PNAPPKSPKTKVSTGSGRPRGRPKKIARS---PAAVA---PTPVPSGRP- 160

Query: 215 KLAVRGRP 222
               RGRP
Sbjct: 161 ----RGRP 164


>UniRef100_Q8H3M0 Putative high mobility group I/Y [Oryza sativa]
          Length = 178

 Score =  116 bits (290), Expect = 1e-24
 Identities = 77/186 (41%), Positives = 98/186 (52%), Gaps = 25/186 (13%)

Query: 35  SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
           +S P   PPY EMI  AIE L EK GS+K+AI+K+IE  Y DLPPAH++LLT HL R+K+
Sbjct: 7   ASKPPPLPPYPEMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKE 66

Query: 95  TGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRSGIPKRRGRPPKPKSLSNGLKRR 153
           +G LI LK +Y   +  P       A P R RGRPP+   P     PP PK  S   + R
Sbjct: 67  SGELIFLKNNY-FRADAPD------APPKRGRGRPPKPRDP--NAPPPPPKPSSPRPRGR 117

Query: 154 PPKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRP 213
           PPK               ++ P+    P+ RGRP K A   P P    G  S+ +  GR 
Sbjct: 118 PPK---------------SKDPISDAIPKSRGRPPKKAKTAPAPPPAAGDGSAPVKRGRG 162

Query: 214 QKLAVR 219
           +   VR
Sbjct: 163 RPPKVR 168


>UniRef100_Q9FER8 HMGI/Y protein [Zea mays]
          Length = 191

 Score =  115 bits (289), Expect = 1e-24
 Identities = 82/202 (40%), Positives = 106/202 (51%), Gaps = 32/202 (15%)

Query: 35  SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
           ++ P+  PPY EMI  AIE L +K GS+K+AI+KYIE  Y  LPPAH++LLT HL R+K+
Sbjct: 6   ATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKE 65

Query: 95  TGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRSGIPKRRGRPPKPKSLSNGLKRR 153
           +G L+ LK +Y   +  P       A P R RGRPP++  P      PK  S +   + R
Sbjct: 66  SGELVFLKNNY-FRAGAPD------APPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGR 118

Query: 154 PPKHQ--LQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA----AALPPPHAVGGVDSSL 207
           PPK +  L+A V               G P+PRGRP K A    AA P P      D S 
Sbjct: 119 PPKAKSPLEAAV----------KQATAGMPKPRGRPPKKAKTEGAASPSPSPAPAGDGS- 167

Query: 208 MVPGRPQKLAVRGRPKNPAGRP 229
             PG+      RGR + P  RP
Sbjct: 168 -TPGK------RGRGRPPKVRP 182


>UniRef100_Q9FYS5 High mobility group I/Y-2 [Zea mays]
          Length = 193

 Score =  114 bits (286), Expect = 3e-24
 Identities = 80/202 (39%), Positives = 104/202 (50%), Gaps = 30/202 (14%)

Query: 35  SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
           ++ P+  PPY EMI  AIE L +K GS+K+AI+KYIE  Y  LPPAH++LLT HL R+K+
Sbjct: 6   ATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARMKE 65

Query: 95  TGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRSGIPKRRGRPPKPKSLSNGLKRR 153
           +G L+ LK +Y   +  P       A P R RGRPP++  P      PK  S +   + R
Sbjct: 66  SGELVFLKNNY-FRAGAPD------APPKRGRGRPPKARDPNAPAPAPKSPSSTGRGRGR 118

Query: 154 PPKHQ--LQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA----AALPPPHAVGGVDSSL 207
           PPK +  L+A V               G P+PRGRP K A    AA P P          
Sbjct: 119 PPKAKSPLEAAV----------KQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDG 168

Query: 208 MVPGRPQKLAVRGRPKNPAGRP 229
             PG+      RGR + P  RP
Sbjct: 169 STPGK------RGRGRPPKVRP 184


>UniRef100_Q9S7Z7 HMGI/Y protein [Zea mays]
          Length = 190

 Score =  114 bits (285), Expect = 4e-24
 Identities = 81/199 (40%), Positives = 101/199 (50%), Gaps = 27/199 (13%)

Query: 35  SSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKD 94
           ++ P+  PPY EMI  AIE L EK GS+K+AI+KYIE  Y  LPPAH +LLT HL  +K+
Sbjct: 6   ATKPSPIPPYPEMILAAIEGLDEKSGSNKSAISKYIEGKYGSLPPAHESLLTAHLAAMKE 65

Query: 95  TGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRP 154
           +G L+ LK +Y       +D   NA     RGRPP++  P      P PKS S+    RP
Sbjct: 66  SGELVFLKNNY-----FRADAPPNAPPKRGRGRPPKARDP--NAPAPAPKSPSSRGAGRP 118

Query: 155 PKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA----AALPPPHAVGGVDSSLMVP 210
           PK +        A           G P+PRGRP K A    AA P P      D S   P
Sbjct: 119 PKAKSPLEARREAGHR--------GMPKPRGRPPKKAKTEGAASPSPSPAPAGDGS--TP 168

Query: 211 GRPQKLAVRGRPKNPAGRP 229
           G+      RGR + P  RP
Sbjct: 169 GK------RGRGRPPKVRP 181


>UniRef100_Q676Y8 High mobility group I/Y-2 [Hyacinthus orientalis]
          Length = 180

 Score =  113 bits (283), Expect = 7e-24
 Identities = 82/186 (44%), Positives = 103/186 (55%), Gaps = 43/186 (23%)

Query: 42  PPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTD-LPPAHSTLLTHHLKRLKDTGLLIM 100
           P Y+EMI  AIEAL EK GS+K+AI+KYIE  Y + LP AHS+LLT HL R+K++G ++M
Sbjct: 5   PSYSEMIMGAIEALDEKAGSNKSAISKYIESKYAEQLPEAHSSLLTAHLARMKESGEILM 64

Query: 101 LKKSYKLPSSLPSDITQNAAQPVR-RGRPPR----------SGIPKRRGRPPKPK----- 144
           +K +Y  P           A P R RGRPP+          S  P+ RGRPPKPK     
Sbjct: 65  VKNNYMKPGP--------EATPKRGRGRPPKPKTPLLAGSVSPSPRPRGRPPKPKDPLAA 116

Query: 145 ---SLSNGLKR---RPPKHQLQATV-----IPFADPSLAQPPVPVGSPRPRGRPRKNAAA 193
                ++G+ R   RPPK   +A V     IP   PS+A P  P G  R RGRP K    
Sbjct: 117 AVAKAASGMPRQRGRPPK---KARVGGGEDIPPTPPSVAAPAAPPGIKRGRGRPPK---- 169

Query: 194 LPPPHA 199
           + PP A
Sbjct: 170 VKPPFA 175


>UniRef100_Q42492 High mobility group protein [Canavalia gladiata]
          Length = 178

 Score =  113 bits (282), Expect = 9e-24
 Identities = 73/197 (37%), Positives = 98/197 (49%), Gaps = 42/197 (21%)

Query: 38  PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
           P + PPY EMI +A+++L E +GS+K+AI+KYIE    +LP  HSTLL HHL ++K++G 
Sbjct: 9   PPSLPPYTEMITKALDSLNEPNGSNKSAISKYIESTCGELPDGHSTLLAHHLNKMKESGE 68

Query: 98  LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPK-SLSNGLKRRPPK 156
           L+ LK +Y  P         +   P +RG          RGRPPKPK  L  G    PP+
Sbjct: 69  LVFLKNNYMKP---------DPTSPPKRG----------RGRPPKPKVPLPPGTVLSPPR 109

Query: 157 HQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
            + +    P A     +  V  GS RPRGRP+K A                      +  
Sbjct: 110 PRGRPPKDPNAPTKSPKAKVSTGSGRPRGRPKKIA----------------------RSA 147

Query: 217 AVRGRPKNPAGRPVGRP 233
           AV      P+GRP GRP
Sbjct: 148 AVVAPTPGPSGRPRGRP 164


>UniRef100_Q40451 DNA-binding protein [Nicotiana tabacum]
          Length = 546

 Score =  112 bits (281), Expect = 1e-23
 Identities = 72/156 (46%), Positives = 83/156 (53%), Gaps = 20/156 (12%)

Query: 21  EAINHAPDSNIPINSSAPA-----NHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYT 75
           + +NHAP    P     PA      HPPYAEMI  AI ALKE+DGSS+ AIAKYI+  YT
Sbjct: 20  QVVNHAPTPTPP-QPPPPAPSFSPTHPPYAEMITAAITALKERDGSSRIAIAKYIDRVYT 78

Query: 76  DLPPAHSTLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPK 135
           +LPP HS LLTHHLKRLK++G L M+K SY L            A P     PP S    
Sbjct: 79  NLPPNHSALLTHHLKRLKNSGYLAMVKHSYML------------AGPPGSAPPPPSADAD 126

Query: 136 RRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSL 171
             G      SLS     RPPK  L+    P A P +
Sbjct: 127 SNGVGTDVSSLSKRKPGRPPK--LKPEAQPHAQPQV 160



 Score = 83.6 bits (205), Expect = 8e-15
 Identities = 75/238 (31%), Positives = 112/238 (46%), Gaps = 55/238 (23%)

Query: 104 SYKLPSSLPSDITQNAAQPV-----RRGRPPRSGIPKRRGRPPKPKSLS--NGLKR--RP 154
           S + P   P  +T NAA        RRGRP ++ +P RRGRP K  +++  NG       
Sbjct: 308 SKRRPGRPPKSVTVNAAPGSAMGSGRRGRPRKNSVPGRRGRPRKNAAVAAANGGANVANI 367

Query: 155 PKHQLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNAAALPP------------------ 196
           P      T +P         P  + +P+ RGRP +++   PP                  
Sbjct: 368 PSVGANVTNVPAGGV-----PGAITTPKRRGRPPRSSG--PPAATVGVTDVPIAAAFDTE 420

Query: 197 --PHAVGG---VDSSLMVP-----GRPQK-------LAVRGRPKNPAGRPVGRP-KGTTS 238
             P+AVGG    ++  + P     GRP K            RP+  +G+P+GRP K  TS
Sbjct: 421 NLPNAVGGGGVTNNGALPPLGKRRGRPPKSYGAAAAAPTVKRPRKLSGKPLGRPRKNVTS 480

Query: 239 ANIAQR---IANENLRRKLEYFQSKVKESLDVLKPYFDHASPVPAIAAIQELEIVATS 293
             ++     +A E L+ KLE+ QS++KE+ + LKP  +  SP  A+AA+QELE +A +
Sbjct: 481 PAVSDPKLVVAYEELKGKLEHMQSRIKEAANALKPCLNAESPAIALAALQELEELAAA 538



 Score = 47.4 bits (111), Expect = 6e-04
 Identities = 51/162 (31%), Positives = 61/162 (37%), Gaps = 32/162 (19%)

Query: 112 PSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSL 171
           P+   + +    R GRP + G    +   PK    S G KRRP +     TV   A P  
Sbjct: 270 PAPGAEESTAKRRPGRPRKDGSTVVKPVEPKLPDQSGGSKRRPGRPPKSVTV--NAAPGS 327

Query: 172 AQPPVPVGSPRP------RGRPRKNAAA-----------LPPPHA------VGGVDSSLM 208
           A      G PR       RGRPRKNAA            +P   A       GGV  ++ 
Sbjct: 328 AMGSGRRGRPRKNSVPGRRGRPRKNAAVAAANGGANVANIPSVGANVTNVPAGGVPGAIT 387

Query: 209 VPGRPQKLAVRGRPKNPAGRPVGRPKGTTSANIAQRIANENL 250
            P R      RGRP   +G P     G T   IA     ENL
Sbjct: 388 TPKR------RGRPPRSSGPPAA-TVGVTDVPIAAAFDTENL 422


>UniRef100_Q43877 HMGI/Y [Pisum sativum]
          Length = 197

 Score =  108 bits (271), Expect = 2e-22
 Identities = 75/202 (37%), Positives = 106/202 (52%), Gaps = 32/202 (15%)

Query: 38  PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGL 97
           P + PPY E+I +AI++L E +GS+K+AI+ YIE  Y +LP  HS +L +HL ++K++G 
Sbjct: 9   PLSLPPYPELILKAIDSLNEPNGSNKSAISNYIESVYGELPEGHSVVLLYHLNQMKESGD 68

Query: 98  LIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKH 157
           L+  K +Y  P         NA     RGRPP++  P     PP     +   + RPPK 
Sbjct: 69  LVFAKNNYLRPD-------PNAPPKRGRGRPPKAKDP--LASPPSGAVSTPRPRGRPPKD 119

Query: 158 QLQATVIPFADPSLAQPPVPVGSPRPRGRPRKNA------AALPPPHAVGGVDSSLMVPG 211
                  P A P   + P   GS RPRGRP+K A      A+ P P +V  V+  ++VP 
Sbjct: 120 -------PNAPP---KTPKASGSGRPRGRPKKIARTEDVDASTPSPVSVAAVNVDVVVP- 168

Query: 212 RPQKLAVRGRPKNPAGRPVGRP 233
                 V   P + +GRP GRP
Sbjct: 169 -----CVAAVPTS-SGRPRGRP 184


>UniRef100_Q9SEH2 High mobility group protein I/Y [Brassica napus]
          Length = 203

 Score =  104 bits (259), Expect = 4e-21
 Identities = 70/190 (36%), Positives = 95/190 (49%), Gaps = 40/190 (21%)

Query: 37  APANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTG 96
           +P + PPY +MI  AIEA  + +G +KTAIAK+IE   T LPP+H TLL++HL ++K +G
Sbjct: 21  SPFSLPPYPQMIMEAIEASNDANGCNKTAIAKHIESTQTSLPPSHMTLLSYHLNQMKQSG 80

Query: 97  LLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPRS----------------GIPKRRGR 139
            + M+K +Y  P           A P R RGRPP++                  P+ RGR
Sbjct: 81  QIAMVKNNYMKPDP--------QAPPKRGRGRPPKAKPQGESSHVAVPAPSVSSPRPRGR 132

Query: 140 PPKPKSLSNGL-------------KRRPPKHQLQATVIPFADPSLAQPPVPVGSPRPRGR 186
           PPK K  S+ +             + RPPK Q   +    AD   A+   P G  R RGR
Sbjct: 133 PPKAKGPSSEVETKVAAPSGSGRPRGRPPKKQKTESEAVKADVEPAE--APAGERRGRGR 190

Query: 187 PRKNAAALPP 196
           P K   A+ P
Sbjct: 191 PPKAKPAMVP 200


>UniRef100_Q38778 DNA-binding protein [Avena sativa]
          Length = 170

 Score =  102 bits (255), Expect = 1e-20
 Identities = 73/193 (37%), Positives = 89/193 (45%), Gaps = 46/193 (23%)

Query: 42  PPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLLTHHLKRLKDTGLLIML 101
           PPY EMI  AIE+L +K GS+K+AI+KYIE  Y D+PP H +LLT HL R+K+TG L+ L
Sbjct: 13  PPYPEMILEAIESLNDKVGSNKSAISKYIEGKYGDMPPTHGSLLTAHLARMKETGELLFL 72

Query: 102 KKSYKLPSSLPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKPKSLSNGLKRRPPKHQLQA 161
           K +Y   +  P               PP+ G    RGRPPK K                 
Sbjct: 73  KNNY-FRTDAPD-------------APPKRG----RGRPPKVK----------------- 97

Query: 162 TVIPFADPSLAQPPVPVGSPRPRGRPRK----NAAALPPPHAVGGVDSSLMVPGRPQKL- 216
                 DP+   PP    S RPRGRP K     A A  PP       +    P       
Sbjct: 98  ------DPNAPPPPPKPSSGRPRGRPAKAKDPEAEAANPPKKPKAAPAPTPAPAADGSTP 151

Query: 217 AVRGRPKNPAGRP 229
           A RGR + P  RP
Sbjct: 152 AKRGRGRPPKVRP 164


>UniRef100_Q43600 PF1 protein [Oryza sativa]
          Length = 213

 Score =  102 bits (254), Expect = 2e-20
 Identities = 73/188 (38%), Positives = 89/188 (46%), Gaps = 30/188 (15%)

Query: 38  PANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTD-LPPAHSTLLTHHLKRLKDTG 96
           PA  P Y EMI  AIEAL +++GS+KTAI+++IE  Y   LPPAH +LLT HL R+K TG
Sbjct: 19  PAATPSYPEMILAAIEALDDRNGSNKTAISQHIEGKYEGLLPPAHPSLLTAHLARMKQTG 78

Query: 97  LLIMLKKSY------KLPSS-------LPSDITQNAAQPVRRGRPPRSGIPKRRGRPPKP 143
            L   K +Y       LP          P D    AA P      P +  P+ RGRPPKP
Sbjct: 79  ELAFSKNNYFRGDDPSLPPKRGRGRPPKPKDAAAAAAAPAPAPAAPAASSPRPRGRPPKP 138

Query: 144 K--------SLSNGLKR---RPPKHQLQATVIPFADPSLAQPPVPVGSPRP-----RGRP 187
           K          ++G+ R   RPPK        P   P+ A  P       P     RGRP
Sbjct: 139 KDPLAEAVAKATSGMPRARGRPPKKAKVEQEDPIGAPAAASAPAAAAEAAPPVKRGRGRP 198

Query: 188 RKNAAALP 195
            K   A P
Sbjct: 199 PKVRPAAP 206


>UniRef100_P92954 HMG-I/Y protein [Arabidopsis thaliana]
          Length = 204

 Score =  102 bits (253), Expect = 2e-20
 Identities = 74/220 (33%), Positives = 100/220 (44%), Gaps = 56/220 (25%)

Query: 23  INHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHS 82
           ++H   S+   +     + PPY +MI  AIE+L +K+G +KT IAK+IE     LPP+H+
Sbjct: 5   LHHGSASDTHSSELPSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHT 64

Query: 83  TLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPR----------- 130
           TLL++HL ++K TG LIM+K +Y  P           A P R RGRPP+           
Sbjct: 65  TLLSYHLNQMKKTGQLIMVKNNYMKPDP--------DAPPKRGRGRPPKQKTQAESDAAA 116

Query: 131 ----------SGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGS 180
                     +  P+ RGRPPKPK  S      PP                 Q  V  GS
Sbjct: 117 AAVVAATVVSTDPPRSRGRPPKPKDPS-----EPP-----------------QEKVITGS 154

Query: 181 PRPRG----RPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
            RPRG    RPR ++  +  P             GRP K+
Sbjct: 155 GRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKV 194


>UniRef100_Q43386 HMG-I/Y protein [Arabidopsis thaliana]
          Length = 204

 Score =  101 bits (251), Expect = 4e-20
 Identities = 74/220 (33%), Positives = 99/220 (44%), Gaps = 56/220 (25%)

Query: 23  INHAPDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHS 82
           ++H   S+   +     + PPY +MI  AIE+L +K+G +KT IAK+IE     LPP+H 
Sbjct: 5   LHHGSASDTHSSELPSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHM 64

Query: 83  TLLTHHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVR-RGRPPR----------- 130
           TLL++HL ++K TG LIM+K +Y  P           A P R RGRPP+           
Sbjct: 65  TLLSYHLNQMKKTGQLIMVKNNYMKPDP--------DAPPKRGRGRPPKQKTQAESDAAA 116

Query: 131 ----------SGIPKRRGRPPKPKSLSNGLKRRPPKHQLQATVIPFADPSLAQPPVPVGS 180
                     +  P+ RGRPPKPK  S      PP                 Q  V  GS
Sbjct: 117 AAVVAATVVSTDPPRSRGRPPKPKDPS-----EPP-----------------QEKVITGS 154

Query: 181 PRPRG----RPRKNAAALPPPHAVGGVDSSLMVPGRPQKL 216
            RPRG    RPR ++  +  P             GRP K+
Sbjct: 155 GRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKV 194


>UniRef100_Q40725 AT1 protein [Oryza sativa]
          Length = 538

 Score =  101 bits (251), Expect = 4e-20
 Identities = 83/226 (36%), Positives = 114/226 (49%), Gaps = 24/226 (10%)

Query: 26  APDSNIPINSSAPANHPPYAEMIYRAIEALKEKDGSSKTAIAKYIEEAYTDLPPAHSTLL 85
           A  S+ P   +A   HP Y EMI RA++ L +   SS+ AIAKYI + ++ LP  H  LL
Sbjct: 6   ASPSSAPGPGAAGRPHPTYKEMILRALKELPDPIISSRRAIAKYISDNFSGLPSHHDALL 65

Query: 86  THHLKRLKDTGLLIMLKKSYKLPSSLPSDITQNAAQPVRRGRPPR----SGIPKRR--GR 139
           T HL+RL+  GLL+M   SY L +S        AA+   RGRPP+    S  P++R  GR
Sbjct: 66  TVHLRRLRSQGLLLMSGHSYLLSTS------ATAARGRGRGRPPKKASSSAPPQKRGPGR 119

Query: 140 PPKPKSL--SNGLKRRPPKHQLQATVIPFA----DPSLAQPPVPVGSPRPRGRPRKNAAA 193
           P K  +L     L+ +P + + +   +P A      + A   + +   R  GRPRKNAAA
Sbjct: 120 PRKNTALFPVPVLEAKPGRGRPRKNPLPVASSTSSAAAAATALSLRVKRGPGRPRKNAAA 179

Query: 194 LPPPHAVGGVDSSLMVPGRPQKLAVRGRPKNPAGRPVGRPKGTTSA 239
            P    V         PGRP+K A     +  A R  GRP+   +A
Sbjct: 180 TPLRLGV------KRGPGRPRKNAAATPLRLGAKRGPGRPRKNATA 219



 Score = 40.0 bits (92), Expect = 0.097
 Identities = 37/95 (38%), Positives = 43/95 (44%), Gaps = 12/95 (12%)

Query: 128 PPRSGIPKRRGRPPKPKS---LSNGLKRRP--PKHQLQATVIPFADPSLAQPPVPVGSPR 182
           P R G  +  GRP K  +   LS G+KR P  P+    A   P A P    P  P+   R
Sbjct: 201 PLRLGAKRGPGRPRKNATATPLSLGVKRGPGRPRKNAAAAASPVAPP----PASPL--KR 254

Query: 183 PRGRPRKNAAALPPPHAVGGVDSSLMVPGRPQKLA 217
             GRPRKNA  L  P   G        PGRP+K A
Sbjct: 255 GVGRPRKNATPLVKP-GPGRPSGFKRGPGRPRKNA 288


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.314    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 677,659,052
Number of Sequences: 2790947
Number of extensions: 33506142
Number of successful extensions: 213584
Number of sequences better than 10.0: 2679
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 2491
Number of HSP's that attempted gapping in prelim test: 192822
Number of HSP's gapped (non-prelim): 13998
length of query: 352
length of database: 848,049,833
effective HSP length: 128
effective length of query: 224
effective length of database: 490,808,617
effective search space: 109941130208
effective search space used: 109941130208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 75 (33.5 bits)