BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0023.5
         (266 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q5W763 Putative polyprotein [Oryza sativa]                   92  1e-17
UniRef100_Q6AVZ6 Putative polyprotein [Oryza sativa]                   92  1e-17
UniRef100_Q75IH6 Putative polyprotein [Oryza sativa]                   92  2e-17
UniRef100_Q69F85 Gag-pol polyprotein [Phaseolus vulgaris]              91  4e-17
UniRef100_Q9SJP0 Putative retroelement pol polyprotein [Arabidop...    81  3e-14
UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]                       80  7e-14
UniRef100_Q8RZN9 Putative polyprotein [Oryza sativa]                   79  1e-13
UniRef100_Q75G47 Putative polyprotein [Oryza sativa]                   79  2e-13
UniRef100_Q6L974 GAG-POL [Vitis vinifera]                              79  2e-13
UniRef100_Q7XXG9 OSJNBb0016B03.14 protein [Oryza sativa]               78  2e-13
UniRef100_Q7XSK8 OSJNBa0059D20.5 protein [Oryza sativa]                78  3e-13
UniRef100_Q7F9H3 OSJNBa0032N05.3 protein [Oryza sativa]                77  4e-13
UniRef100_Q851T8 Putative polyprotein [Oryza sativa]                   77  5e-13
UniRef100_Q8S636 Putative polyprotein [Oryza sativa]                   76  1e-12
UniRef100_Q7X6D6 OSJNBa0093P23.3 protein [Oryza sativa]                76  1e-12
UniRef100_Q84SR2 Putative GAG-POL [Oryza sativa]                       76  1e-12
UniRef100_Q7XVB0 OSJNBa0081G05.5 protein [Oryza sativa]                76  1e-12
UniRef100_Q6AVB9 Putative polyprotein [Oryza sativa]                   76  1e-12
UniRef100_Q7Y1N5 Putative polyprotein [Oryza sativa]                   75  1e-12
UniRef100_Q6I5B8 Putative polyprotein [Oryza sativa]                   75  1e-12

>UniRef100_Q5W763 Putative polyprotein [Oryza sativa]
          Length = 1551

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 54/147 (36%), Positives = 80/147 (53%), Gaps = 21/147 (14%)

Query: 99   PPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKIR 158
            P ++  T+   WPFA+WG D++GLF  A      + VAVD F+KWIEA+ V TIT  K R
Sbjct: 1390 PAQEQQTIPLSWPFAVWGLDMVGLFKKAIGGYTHLFVAVDKFSKWIEAKPVITITADKAR 1449

Query: 159  NF-----------------LWRRIT----STGETPYKLTYGSDAMLPVEVENQSWRVITM 197
            +F                 LW   T    +TG++P+ L YG++AMLP EVE +S R    
Sbjct: 1450 DFFINIVHRFGWVEQLSSVLWSLHTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRFHNF 1509

Query: 198  NEEENNDNLIANLIMLPELQREAHLRN 224
            +EE   ++ + +L  L E +  A +++
Sbjct: 1510 SEERYGEDRVDDLNRLEEAREAALIQS 1536


>UniRef100_Q6AVZ6 Putative polyprotein [Oryza sativa]
          Length = 1844

 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 61/168 (36%), Positives = 90/168 (53%), Gaps = 13/168 (7%)

Query: 99   PPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKIR 158
            P ++L T+   WPFA+WG D++G F  A      + VA+D F+KWIEA+ V TIT  K R
Sbjct: 1648 PAQELQTIPLSWPFAVWGLDMVGPFKKAVGGYTHLFVAIDKFSKWIEAKPVVTITADKAR 1707

Query: 159  NFLWRRITSTGETPYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLPELQR 218
            +F              + + ++AMLP EV+ +S R     EE   ++ + +L  L E+ R
Sbjct: 1708 DFF-----------INIVHRAEAMLPSEVKFESLRFHNFREERYEEDRVDDLHRLEEV-R 1755

Query: 219  EAHLRNEAGKGRVARKYASK-VDSRKMKARDLVLRQRTMTSRCNKLTP 265
            EA L   A   +  R+Y ++ V SR     DLVLR+   T   +KL+P
Sbjct: 1756 EAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVLRKIQTTRDRHKLSP 1803



 Score = 35.4 bits (80), Expect = 1.5
 Identities = 24/66 (36%), Positives = 35/66 (52%), Gaps = 10/66 (15%)

Query: 6    PTPEVPLILYLAVTSTAVSAMLLQEE------HKKYKMIYFVSHTLQGAEVRYQK----I 55
            P  + PL+LY++ TS  VS +L+ E        K  + IYFVS  L  ++ RY +    I
Sbjct: 1284 PHLQEPLLLYVSATSQVVSTVLVVEREEEGHIQKVQRPIYFVSEVLADSKTRYPQPRTSI 1343

Query: 56   EKAALA 61
            +  ALA
Sbjct: 1344 KSQALA 1349


>UniRef100_Q75IH6 Putative polyprotein [Oryza sativa]
          Length = 1048

 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 66/202 (32%), Positives = 94/202 (45%), Gaps = 41/202 (20%)

Query: 98   APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
            AP   L  +   WPFA WG DI+G F VA+   KF +VAV+YF++WIEAE + TIT+A +
Sbjct: 809  APQYDLQPIAPVWPFARWGLDIIGPFPVARNGYKFTIVAVEYFSRWIEAEPLGTITLAAV 868

Query: 158  RNFLWRR-----------ITSTGE-----------------------TPYKLTYGSDAML 183
            + F+W+            IT  G+                       +P+   YG +AM 
Sbjct: 869  QKFVWKNIVCRFGVPKEFITDNGKQFDSDKFREMCEGLNLQIRPTKFSPFMPLYGDEAMT 928

Query: 184  PVEVENQSWRVITMNEEENNDNLIANLIMLPELQREA--HLRNEAGKGRVARKYASKVDS 241
            P E+   S RVI    EE  +    +L +L  ++ EA  H+   A     A  Y  KV  
Sbjct: 929  PTELGANSPRVIFSGGEEGRE---VSLELLEGVRVEALEHMHKYATSTSAA--YNKKVRP 983

Query: 242  RKMKARDLVLRQRTMTSRCNKL 263
            R++    LVLR++       KL
Sbjct: 984  RELMPGQLVLRKKANPIEVGKL 1005



 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 16/140 (11%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
           P P   L+LYLA +  AVSA L+QE     K +YFVS  LQGA+ RY ++EK A A++  
Sbjct: 417 PPPGSELLLYLAASPVAVSAALVQEIESGQKPVYFVSEALQGAKTRYIEMEKLAYALVMA 476

Query: 66  ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADI--LGLF 123
           +R+L+ YFQ+ ++ V +  LL ++ +  +++G               + W A++    L 
Sbjct: 477 SRKLKHYFQAHKVIVPSQYLLGEILRGKEVTGR-------------LSKWAAELSPFDLH 523

Query: 124 SVAKAQMKFIVVAVDYFTKW 143
            VA++ +K  V+A D+  +W
Sbjct: 524 FVARSAIKSQVLA-DFVAEW 542


>UniRef100_Q69F85 Gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 43/94 (45%), Positives = 66/94 (69%)

Query: 4    QKPTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAIL 63
            QKP    P+++YLAV++ AVS+ L+QE   + + +YFVS  L  AE RYQ +EK A A++
Sbjct: 1190 QKPNAREPIVVYLAVSNEAVSSALVQEIKAEERPVYFVSRVLHDAETRYQMVEKVAFALV 1249

Query: 64   KTARRLRPYFQSFQIKVKTDILLRQVWQKPDLSG 97
             TARR+R YFQ+ ++ V+T+  + ++  KPDL+G
Sbjct: 1250 ITARRMRMYFQNHKVIVRTNYPIMKILTKPDLAG 1283



 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/90 (43%), Positives = 59/90 (65%)

Query: 166  TSTGETPYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLPELQREAHLRNE 225
            ++T ETPY LTYG++AM+PVE+   S R  T++ + N ++L+  L ++ EL+ +  +R E
Sbjct: 1718 STTQETPYSLTYGTEAMIPVEIGEPSLRRQTLDLDLNKESLLVGLDLINELRDKCKIREE 1777

Query: 226  AGKGRVARKYASKVDSRKMKARDLVLRQRT 255
            A K R AR+Y SKV  R  +  DLV R R+
Sbjct: 1778 ACKIRAARRYNSKVKPRSYQKGDLVWRMRS 1807



 Score = 62.8 bits (151), Expect = 9e-09
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 115  WGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKIRNFLWRRI 165
            +G DI+G F+  K Q KF++V +DYFTKWIEAE +  IT   +++F+W+ I
Sbjct: 1581 YGMDIIGPFTPGKGQCKFLLVGIDYFTKWIEAEPLTAITARNVQSFVWKNI 1631


>UniRef100_Q9SJP0 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 39/86 (45%), Positives = 62/86 (71%)

Query: 12   LILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKTARRLRP 71
            L LY+AV+++AVS +L++E+  +   I++VS TL GAE+RY  +EK A A++ +AR+LRP
Sbjct: 1059 LYLYIAVSTSAVSGVLVREDRGEQHPIFYVSKTLDGAELRYPTLEKLAFAVVISARKLRP 1118

Query: 72   YFQSFQIKVKTDILLRQVWQKPDLSG 97
            YF+S+ ++V T+  LR +   P  SG
Sbjct: 1119 YFKSYTVEVLTNQPLRTILHSPSQSG 1144



 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 99   PPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKIR 158
            P E L T   P+PF  W  DI+  F  ++ Q K+I+V  DYFTKW EAE+   I   +++
Sbjct: 1490 PSEVLQTAMPPYPFMRWAMDIIRPFPASR-QKKYILVMTDYFTKWFEAESYARIQSKEVQ 1548

Query: 159  NFLWRRITSTGETPYKL 175
            NF+W+ I      PY++
Sbjct: 1549 NFVWKNIICHHGLPYEI 1565



 Score = 46.2 bits (108), Expect = 9e-04
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 167  STGETPYKLTYGSDAMLPVEVENQS-WRVITMNEEENNDN-LIANLIMLPELQREAHLRN 224
            ST  TP+ LTYG +A+ P E    +  R + +N+   ND  L+ NL  L E + +A LR 
Sbjct: 1643 STDRTPFSLTYGMEALAPCEAGLPTVRRSMLINDPTLNDQMLLDNLDTLEEQRDQALLRI 1702

Query: 225  EAGKGRVARKYASKVDSRKMKARDLVLRQ 253
            +  +   A+ Y  KV +R     DLVLR+
Sbjct: 1703 QNYQQAAAKFYNKKVKNRLFAEGDLVLRK 1731


>UniRef100_Q9LMV1 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 44/93 (47%), Positives = 60/93 (64%)

Query: 5    KPTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILK 64
            KP     L LY+AV+  AVS++L++E+  + + I++ S +L  AE RY  IEKAALA++ 
Sbjct: 1114 KPEVGETLYLYIAVSDHAVSSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVT 1173

Query: 65   TARRLRPYFQSFQIKVKTDILLRQVWQKPDLSG 97
            +AR+LRPYFQS  I V TD  LR     P  SG
Sbjct: 1174 SARKLRPYFQSHTIAVLTDQPLRVALHSPSQSG 1206



 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 4/99 (4%)

Query: 99   PPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKIR 158
            P E L    AP+PF  W  DI+G    ++ Q +FI+V  DYFTKW+EAE+  TI    ++
Sbjct: 1541 PTELLRAGVAPYPFMRWAMDIVGPMPASR-QKRFILVMTDYFTKWVEAESYATIRANDVQ 1599

Query: 159  NFLWRRITSTGETPYK-LTYGSDAMLPVEVEN--QSWRV 194
            NF+W+ I      PY+ +T      + +  EN   SW++
Sbjct: 1600 NFVWKFIICRHGLPYEIITDNGSQFISLSFENFCASWKI 1638



 Score = 45.8 bits (107), Expect = 0.001
 Identities = 30/90 (33%), Positives = 47/90 (51%), Gaps = 2/90 (2%)

Query: 166  TSTGETPYKLTYGSDAMLPVEVENQSWR--VITMNEEENNDNLIANLIMLPELQREAHLR 223
            ++T +TP+   YG +AM P EV   S R  ++  N E N+  ++  L  L E++  A  R
Sbjct: 1693 SATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELNDRMMLDRLDDLEEIRNAALCR 1752

Query: 224  NEAGKGRVARKYASKVDSRKMKARDLVLRQ 253
             +  +   A+ Y  KV +R     DLVLR+
Sbjct: 1753 IQNYQLAAAKHYNQKVHNRHFDVGDLVLRK 1782


>UniRef100_Q8RZN9 Putative polyprotein [Oryza sativa]
          Length = 2001

 Score = 79.0 bits (193), Expect = 1e-13
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query: 95   LSGAPPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITV 154
            ++ APP++L  +   WPF  WG DI+G    AK  ++F++VA++YF++WIEAEAV  IT 
Sbjct: 1705 MTKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAEAVARITS 1764

Query: 155  AKIRNFLWRRI 165
            A ++ F+W+ I
Sbjct: 1765 AAVQKFVWKNI 1775



 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 47/153 (30%), Positives = 77/153 (49%), Gaps = 16/153 (10%)

Query: 6    PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
            P    PL++Y+A T   VSA+L+QEE  +   +YFVS  LQG + RY ++EK   AI+  
Sbjct: 1299 PPKGQPLLMYVAATPATVSAVLVQEEENRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMA 1358

Query: 66   ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADIL--GLF 123
            +R+LR YF S  I + +   + +V    +++G               A W  ++L   L 
Sbjct: 1359 SRKLRHYFLSHDITIPSAYPIGEVLTNKEVAGR-------------IAKWAMELLPFDLK 1405

Query: 124  SVAKAQMKFIVVAVDYFTKWIEAEAVETITVAK 156
             +++  +K  V+A D+  +W   E  +   V K
Sbjct: 1406 YISRTAIKSQVLA-DFVAEWTPNEVEQQEEVKK 1437



 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)

Query: 165  ITSTGETPYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLPELQREAHLRN 224
            + STG TP++L YG +AM P EV   S R+I   ++E    +   L ML E++ EA  + 
Sbjct: 1862 VRSTGMTPFRLVYGDEAMTPSEVGAHSPRMIFDQKDEEGREI--TLEMLDEIRVEALEKM 1919

Query: 225  EAGKGRVARKYASKVDSRKMKARDLVLRQ 253
             +        Y  KV +R ++  DLVL++
Sbjct: 1920 ASYTEGTKSYYNQKVKTRPIEEGDLVLKK 1948


>UniRef100_Q75G47 Putative polyprotein [Oryza sativa]
          Length = 1459

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 33/70 (47%), Positives = 49/70 (69%)

Query: 96   SGAPPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVA 155
            S APP++L  +   WPF  WG DI+G    AK  ++F++VA++YF++WIEAEAV  IT A
Sbjct: 1164 SKAPPKELQPIPPVWPFYRWGIDIVGPLPRAKGDLRFVIVAIEYFSRWIEAEAVARITSA 1223

Query: 156  KIRNFLWRRI 165
             ++ F+W+ I
Sbjct: 1224 AMQKFVWKNI 1233



 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
           P    PL+LY+A T   VSA+L+QE+  K   +YFVS  LQG + RY ++EK   AI+  
Sbjct: 756 PQKGEPLLLYVAATPVTVSAVLVQEQGNKQMPVYFVSEALQGPKTRYIEVEKMIYAIVMA 815

Query: 66  ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSG 97
           +R+LR YF S  I + +   + +V    +++G
Sbjct: 816 SRKLRHYFLSHDITIPSTYPIGEVLSNKEIAG 847



 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 2/89 (2%)

Query: 165  ITSTGETPYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLPELQREAHLRN 224
            + +TG TP++L YG + M P EV   S RVI   E+E    +  +L ML E++ EA  + 
Sbjct: 1320 VWATGMTPFRLVYGDEPMTPSEVGVNSPRVIFYQEDEQGRKV--SLEMLDEIRVEALQKM 1377

Query: 225  EAGKGRVARKYASKVDSRKMKARDLVLRQ 253
            EA      ++Y  KV  R ++  DLVL++
Sbjct: 1378 EAYTEGTRKQYNKKVRPRNIEEGDLVLKK 1406


>UniRef100_Q6L974 GAG-POL [Vitis vinifera]
          Length = 1027

 Score = 78.6 bits (192), Expect = 2e-13
 Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 1/93 (1%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQ-EEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILK 64
           P P+  L +YLAV+  A+SA+L +    K+ K IY+VS  L   E RY K+E  +LA+  
Sbjct: 312 PIPKEKLYMYLAVSEWAISAVLFRCPSPKEQKPIYYVSRALADVETRYSKMELISLALRS 371

Query: 65  TARRLRPYFQSFQIKVKTDILLRQVWQKPDLSG 97
            A++LRPYFQ+  + V TD  LR +  KPDL+G
Sbjct: 372 AAQKLRPYFQAHPVIVLTDQPLRNILHKPDLTG 404



 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 30/67 (44%), Positives = 42/67 (61%)

Query: 99  PPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKIR 158
           P   L +++ PWPFA WG DI+     A AQ KF++VA DYF+KW+EAEA  +     + 
Sbjct: 731 PSTTLKSISGPWPFAQWGMDIVRPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVT 790

Query: 159 NFLWRRI 165
            F+W+ I
Sbjct: 791 KFVWKNI 797



 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 32/104 (30%), Positives = 50/104 (47%), Gaps = 4/104 (3%)

Query: 154 VAKIRNFLWRRITS----TGETPYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIAN 209
           V ++   LW   T+    TG TP+ L YG DA++P+E+   +       + + N  L  N
Sbjct: 868 VEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWTNAAKQSDANMQLGRN 927

Query: 210 LIMLPELQREAHLRNEAGKGRVARKYASKVDSRKMKARDLVLRQ 253
           L    E++  A +R    + R +  Y  KV  R +K   LVLR+
Sbjct: 928 LDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRK 971


>UniRef100_Q7XXG9 OSJNBb0016B03.14 protein [Oryza sativa]
          Length = 1323

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 16/154 (10%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
           PTP   L+LYLA +  AVSA L+QE     K +YF+S  LQGA+ RY ++EK A A++  
Sbjct: 662 PTPGSELLLYLAASPVAVSAALVQETKFGQKPVYFISEALQGAKTRYIEMEKLAYALVMA 721

Query: 66  ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADI--LGLF 123
           +R+L+ YFQ+ ++ V     L ++ +  +++G               + W A++    L 
Sbjct: 722 SRKLKHYFQAHKVIVPPQYPLGEILRGKEVTGR-------------LSKWAAELSPFDLH 768

Query: 124 SVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
            VA+  +K  V+A D+  +W    A ET  V ++
Sbjct: 769 FVARTAIKSQVLA-DFVAEWTLVFAPETELVEQL 801



 Score = 71.2 bits (173), Expect = 3e-11
 Identities = 32/68 (47%), Positives = 44/68 (64%)

Query: 98   APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
            AP   L  +   W FA WG DI+G F VA+   KF +VAV+YF++WIEAE +  IT A +
Sbjct: 1058 APQYDLQPIAPVWLFASWGLDIIGPFPVARNGYKFTIVAVEYFSRWIEAEPLGAITSATV 1117

Query: 158  RNFLWRRI 165
            + F+W+ I
Sbjct: 1118 QKFVWKNI 1125



 Score = 35.8 bits (81), Expect = 1.2
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 11/109 (10%)

Query: 161  LWR-RITSTGET---PYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLPEL 216
            LW  R T T  T   P+ L YG +AM P E+   S RV+    EE  +    +L +L  +
Sbjct: 1204 LWALRTTPTRPTKFSPFMLFYGDEAMTPAELGANSPRVMFSRREEGRE---VSLELLEGV 1260

Query: 217  QREA--HLRNEAGKGRVARKYASKVDSRKMKARDLVLRQRTMTSRCNKL 263
            + EA  H+R  A     +  Y  KV   ++    LVLR +       KL
Sbjct: 1261 RVEALEHMRKYATS--TSATYNKKVRPTELMPGHLVLRNKANPIAVGKL 1307


>UniRef100_Q7XSK8 OSJNBa0059D20.5 protein [Oryza sativa]
          Length = 832

 Score = 77.8 bits (190), Expect = 3e-13
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query: 98  APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
           AP  +L  +   WPFAIWG DI+G F VA+   KF +VAV+YF++WIEAE +  IT A +
Sbjct: 631 APQYELQPIAPIWPFAIWGLDIIGPFPVARNGYKFAIVAVEYFSRWIEAEPLGAITSAAV 690

Query: 158 RNFLWRRI 165
           + F+W+ I
Sbjct: 691 QKFVWKNI 698



 Score = 62.8 bits (151), Expect = 9e-09
 Identities = 33/90 (36%), Positives = 54/90 (59%)

Query: 8   PEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKTAR 67
           P   L+LY A    AVSA L+QE     K +YFVS  LQGA+ RY ++ K A A++  +R
Sbjct: 281 PGSELLLYPAALPVAVSAALVQETESGQKPVYFVSEALQGAKTRYIEMGKLAYALVMASR 340

Query: 68  RLRPYFQSFQIKVKTDILLRQVWQKPDLSG 97
           +L+ Y Q+ ++ V +   L ++ +  +++G
Sbjct: 341 KLKHYLQAHKVIVSSQYPLGKILRGKEVTG 370


>UniRef100_Q7F9H3 OSJNBa0032N05.3 protein [Oryza sativa]
          Length = 707

 Score = 77.4 bits (189), Expect = 4e-13
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 16/142 (11%)

Query: 12  LILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKTARRLRP 71
           L+LYLA +  AVSA L+QE     K +YF+S  LQGA++RY ++EK   A++  +R+L+ 
Sbjct: 373 LLLYLAASPVAVSAALVQETESGQKPVYFISEALQGAKLRYIEMEKFTYALVMASRKLKH 432

Query: 72  YFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADI--LGLFSVAKAQ 129
           YFQ+ ++ V +   L +V +  +++G            W  + W A++    L  VA+  
Sbjct: 433 YFQAHKVTVPSQYPLGEVLRGKEITG------------W-LSKWVAELSPFDLHFVARTA 479

Query: 130 MKFIVVAVDYFTKWIEAEAVET 151
           +K  V+A D+  KW  A A ET
Sbjct: 480 IKSQVLA-DFVAKWTPAFASET 500


>UniRef100_Q851T8 Putative polyprotein [Oryza sativa]
          Length = 658

 Score = 77.0 bits (188), Expect = 5e-13
 Identities = 33/68 (48%), Positives = 47/68 (68%)

Query: 98  APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
           AP   L  +   WPFA WG DI+G FSVA+   KF++VA++YF++WIEAE +  IT A +
Sbjct: 366 APHYNLQPIAPIWPFARWGLDIIGPFSVARNGYKFVIVAIEYFSRWIEAEPLGAITSAAV 425

Query: 158 RNFLWRRI 165
           + F+W+ I
Sbjct: 426 QKFVWKNI 433



 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 39/92 (42%), Positives = 60/92 (64%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
           PTP   L+LYLA +  AVSA L+QE     K +YFVS  LQGA+ RY ++EK A A++  
Sbjct: 70  PTPGSELLLYLAASPVAVSAALVQETESGQKPVYFVSEALQGAKTRYIEMEKLAYALVMA 129

Query: 66  ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSG 97
           +R+L+ YFQ+ ++ V +   L ++ +  ++SG
Sbjct: 130 SRKLKHYFQAHKVIVPSLYPLGEILRGKEISG 161



 Score = 34.3 bits (77), Expect = 3.4
 Identities = 31/112 (27%), Positives = 50/112 (43%), Gaps = 7/112 (6%)

Query: 156 KIRNFLWR-RITSTGET---PYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLI 211
           ++ + LW  R T T  T   P+ L YG +AM P E+   S RV+    EE ++    +L 
Sbjct: 507 ELLSVLWALRTTPTRPTKFSPFMLLYGDEAMTPAELGANSPRVMFSGGEEGHE---VSLE 563

Query: 212 MLPELQREAHLRNEAGKGRVARKYASKVDSRKMKARDLVLRQRTMTSRCNKL 263
           +L  ++ EA           +  Y  KV   ++    L+LR++       KL
Sbjct: 564 LLEGVRVEALEHMHKYATSTSATYNKKVRPTELMPGHLILRKKANLVAVGKL 615


>UniRef100_Q8S636 Putative polyprotein [Oryza sativa]
          Length = 1722

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 98   APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
            AP   L  +   WPFA WG DI+G F VA+   KF++VAV+YF++WIEAE +  IT A +
Sbjct: 1430 APQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAVEYFSRWIEAEPLGAITSAAV 1489

Query: 158  RNFLWRRI 165
            + F+W+ I
Sbjct: 1490 QKFVWKNI 1497



 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 16/140 (11%)

Query: 6    PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
            P P   L+LYLA +  AVSA L+QE     K +YFVS  LQGA+ RY ++EK A A++  
Sbjct: 1059 PPPGSELLLYLAASPVAVSAALVQETKFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMA 1118

Query: 66   ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADI--LGLF 123
            +R+L+ YFQ+ ++ V +   L ++    ++SG               + W A++    L 
Sbjct: 1119 SRKLKHYFQAHKVIVPSQYPLGEILLGKEVSGR-------------LSKWAAELSPFDLH 1165

Query: 124  SVAKAQMKFIVVAVDYFTKW 143
             VA+  +K  V+A D+  +W
Sbjct: 1166 FVARTAIKSQVLA-DFVAEW 1184



 Score = 33.9 bits (76), Expect = 4.4
 Identities = 26/93 (27%), Positives = 41/93 (43%), Gaps = 3/93 (3%)

Query: 171  TPYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLPELQREAHLRNEAGKGR 230
            +P+ L YG +AM P E+   S RV+    EE  +    +L +L  ++ EA          
Sbjct: 1590 SPFMLLYGDEAMTPAELGTNSPRVMFSGGEEGRE---VSLELLEGVRVEALEHMHKYATS 1646

Query: 231  VARKYASKVDSRKMKARDLVLRQRTMTSRCNKL 263
             +  Y  KV   ++    LVLR++       KL
Sbjct: 1647 TSATYNKKVRPTELMPGHLVLRKKANPIAVGKL 1679


>UniRef100_Q7X6D6 OSJNBa0093P23.3 protein [Oryza sativa]
          Length = 598

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 8/147 (5%)

Query: 23  VSAMLLQEEHKKYKMIY---FVSHTLQGAEVRYQKIEKAALAILKTARRLRPYFQSFQIK 79
           V A  LQ    KYKM+          QG    +Q    AA  +     R   Y+ +    
Sbjct: 231 VEAKRLQLSATKYKMVSGEEMAKEIHQGLCGAHQ----AARTVASKVFRQGVYWPTVLKV 286

Query: 80  VKTDILLRQVWQKPDLSGAPPEQLTTMTAP-WPFAIWGADILGLFSVAKAQMKFIVVAVD 138
               I   +  Q+ D S A P+      AP WPFA WG DI+G F VA+   KF +VAV+
Sbjct: 287 CVEQIKKCESCQRYDRSQAAPQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFTIVAVE 346

Query: 139 YFTKWIEAEAVETITVAKIRNFLWRRI 165
           YF++WIEAE +  IT A ++ F+W+ I
Sbjct: 347 YFSRWIEAEPLGAITSAVVQKFVWKNI 373



 Score = 33.5 bits (75), Expect = 5.8
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 7/112 (6%)

Query: 156 KIRNFLWR-RITSTGET---PYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLI 211
           ++ + LW  R T T  T   P+ L YG  AM P E+   S RV+    EE  +    +L 
Sbjct: 447 ELLSVLWALRTTPTRPTKFSPFMLLYGDKAMTPAELGANSPRVMFSGGEEGRE---VSLE 503

Query: 212 MLPELQREAHLRNEAGKGRVARKYASKVDSRKMKARDLVLRQRTMTSRCNKL 263
           +L  ++ EA           +  Y  KV   ++    LVLR++       KL
Sbjct: 504 LLEGVRVEALKHMHKYATSTSATYNKKVRPTELMPGHLVLRKKANPVAVGKL 555


>UniRef100_Q84SR2 Putative GAG-POL [Oryza sativa]
          Length = 562

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 98  APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
           AP   L  +   WPFA WG DI+G F VA+   KF++VAV+YF++WIEAE +  IT A +
Sbjct: 405 APQYNLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAVEYFSRWIEAEPLGAITSAAV 464

Query: 158 RNFLWRRI 165
           + F+W+ I
Sbjct: 465 QKFVWKNI 472



 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 35/86 (40%), Positives = 57/86 (65%)

Query: 12  LILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKTARRLRP 71
           L+LYLA +  AVSA L+QE     K +YFVS  LQGA+ RY ++EK A A++  +R+L+ 
Sbjct: 171 LLLYLAASPVAVSAALVQETEFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMASRKLKH 230

Query: 72  YFQSFQIKVKTDILLRQVWQKPDLSG 97
           YFQ+ ++ + T   L ++ +  +++G
Sbjct: 231 YFQAHKVIMPTQYPLGEILRGKEVTG 256


>UniRef100_Q7XVB0 OSJNBa0081G05.5 protein [Oryza sativa]
          Length = 926

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 16/147 (10%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
           P P   L+LYLA +  AVSA L+QE     K +YFVS  LQGA+ RY ++EK A A++  
Sbjct: 294 PAPGSELLLYLAASPVAVSAALVQETEFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMA 353

Query: 66  ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADI--LGLF 123
           +R+L+ YFQ+ ++ V +   L ++ +  +++G               + W A++    L 
Sbjct: 354 SRKLKHYFQAHKVIVPSQYPLGEILRGKEVTGR-------------LSKWAAELSTFDLH 400

Query: 124 SVAKAQMKFIVVAVDYFTKWIEAEAVE 150
            VA+  +K  V+A D+  +W    A E
Sbjct: 401 FVARTAIKSQVLA-DFVAEWTPVFAPE 426



 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 25/50 (50%), Positives = 36/50 (72%)

Query: 116 GADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKIRNFLWRRI 165
           G DI+G F VA+   KF +VAV+YF++WIEAE +  IT A ++ F+W+ I
Sbjct: 641 GLDIIGPFPVARNGYKFAIVAVEYFSRWIEAEPLGAITSAAVQKFVWKNI 690



 Score = 35.0 bits (79), Expect = 2.0
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 11/111 (9%)

Query: 159 NFLWR-RITSTGET---PYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLP 214
           + LW  R T T  T   P+ L YG +AM P E+   S RV+    EE  +    +L +L 
Sbjct: 767 SILWALRTTPTRPTKFSPFILLYGDEAMTPAELWANSPRVMFSGGEEGRE---VSLELLE 823

Query: 215 ELQREA--HLRNEAGKGRVARKYASKVDSRKMKARDLVLRQRTMTSRCNKL 263
            ++ EA  H+R  A     +  Y  KV   ++    LVLR++       KL
Sbjct: 824 GVRVEALEHMRKYATS--TSATYNKKVRPTELMPGHLVLRKKANPIAVGKL 872


>UniRef100_Q6AVB9 Putative polyprotein [Oryza sativa]
          Length = 986

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 33/68 (48%), Positives = 46/68 (67%)

Query: 98  APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
           AP   L  +   WPFA WG DI+G F VA+   KF++VAV+YF++WIEAE +  IT A +
Sbjct: 694 APQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFVIVAVEYFSRWIEAEPLGAITSAAV 753

Query: 158 RNFLWRRI 165
           + F+W+ I
Sbjct: 754 QKFVWKNI 761



 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/44 (52%), Positives = 28/44 (63%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAE 49
           P P   L+LYLA +  AVSA L+QE     K +YFVS  LQGA+
Sbjct: 303 PPPGSELLLYLAASPVAVSAALVQETESGQKPVYFVSEALQGAK 346



 Score = 37.0 bits (84), Expect = 0.52
 Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 165 ITSTGETPYKLTYGSDAMLPVEVENQSWRVITMNEEENNDNLIANLIMLPELQREAHLRN 224
           I  T  +P+ L YG DAM+P E+   S RV+    EE  +    +L +L  ++ EA    
Sbjct: 848 IRPTKFSPFMLLYGDDAMIPAELGANSPRVMFSGGEEGRE---VSLELLEAVRVEALEHM 904

Query: 225 EAGKGRVARKYASKVDSRKMKARDLVLRQRTMTSRCNKL 263
                  +  Y  KV   ++    LVLR++       KL
Sbjct: 905 HKYATSTSATYNKKVRPTELMPGHLVLRKKANPLAVGKL 943


>UniRef100_Q7Y1N5 Putative polyprotein [Oryza sativa]
          Length = 1862

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 46/140 (32%), Positives = 78/140 (54%), Gaps = 16/140 (11%)

Query: 6    PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
            P P   L+LYLA +  A+SA L+QE     K +YFVS  LQGA+ RY ++EK A A++  
Sbjct: 1153 PPPGSELLLYLAASPVAISAALVQETESGQKPVYFVSEALQGAKTRYIEMEKLAYALVMA 1212

Query: 66   ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADI--LGLF 123
            +R+L+ YFQ+ ++ V +   L ++ +  +++G               + W A++    L+
Sbjct: 1213 SRKLKHYFQANKVIVPSQYPLGEILRGKEVTGR-------------LSKWAAELSPFDLY 1259

Query: 124  SVAKAQMKFIVVAVDYFTKW 143
             VA + +K  V+A D+  +W
Sbjct: 1260 FVAHSAIKSQVLA-DFVAEW 1278



 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 33/68 (48%), Positives = 45/68 (65%)

Query: 98   APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
            AP   L  +   WPFA WG DI+G F VA+   KF +VAV+YF++WIEAE +  IT A +
Sbjct: 1571 APQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFAIVAVEYFSRWIEAEPLGAITSAAV 1630

Query: 158  RNFLWRRI 165
            + F+W+ I
Sbjct: 1631 QKFVWKNI 1638


>UniRef100_Q6I5B8 Putative polyprotein [Oryza sativa]
          Length = 1136

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 35/83 (42%), Positives = 49/83 (58%)

Query: 98  APPEQLTTMTAPWPFAIWGADILGLFSVAKAQMKFIVVAVDYFTKWIEAEAVETITVAKI 157
           AP   L  +   WPFA WG DI+G F VA+   KF +VAV+YF++WIEAE +  IT A +
Sbjct: 844 APQYDLQPIAPIWPFARWGLDIIGPFPVARNGYKFTIVAVEYFSRWIEAEPLGAITSAAV 903

Query: 158 RNFLWRRITSTGETPYKLTYGSD 180
           + F+W+ I      P +    +D
Sbjct: 904 QKFVWKNIVCRFGVPKEFITNND 926



 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 47/147 (31%), Positives = 80/147 (53%), Gaps = 16/147 (10%)

Query: 6   PTPEVPLILYLAVTSTAVSAMLLQEEHKKYKMIYFVSHTLQGAEVRYQKIEKAALAILKT 65
           P P   L+LYLA +  AVSA L+QE     K +YFVS  LQGA+ RY ++EK A A++  
Sbjct: 426 PPPGSELLLYLAASPVAVSAALVQETEFGQKPVYFVSEALQGAKTRYIEMEKLAYALVMA 485

Query: 66  ARRLRPYFQSFQIKVKTDILLRQVWQKPDLSGAPPEQLTTMTAPWPFAIWGADI--LGLF 123
           + +L+ YFQ+ ++ V +   L ++ +  +++G               + W A++    L 
Sbjct: 486 SCQLKHYFQAHKVIVPSQYPLGEILRGKEVTGR-------------LSKWAAELSPFDLH 532

Query: 124 SVAKAQMKFIVVAVDYFTKWIEAEAVE 150
            VA++ +K  V+A D+  +W    A++
Sbjct: 533 FVARSAIKSQVLA-DFVAEWTPVLALD 558


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.320    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,705,541
Number of Sequences: 2790947
Number of extensions: 15598954
Number of successful extensions: 40697
Number of sequences better than 10.0: 830
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 38755
Number of HSP's gapped (non-prelim): 1829
length of query: 266
length of database: 848,049,833
effective HSP length: 125
effective length of query: 141
effective length of database: 499,181,458
effective search space: 70384585578
effective search space used: 70384585578
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 73 (32.7 bits)