BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0023.3
(106 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana] 42 0.003
UniRef100_Q8LMT3 Putative retroelement [Oryza sativa] 41 0.008
UniRef100_Q5W741 Hypothetical protein OJ1005_D04.5 [Oryza sativa] 41 0.008
UniRef100_O23410 STRONG homology to reverse transcriptase [Arabi... 41 0.008
UniRef100_Q7XHD1 Putative retroelement [Oryza sativa] 40 0.013
UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcrip... 40 0.017
UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcri... 39 0.022
UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa] 39 0.022
UniRef100_O82276 Putative non-LTR retroelement reverse transcrip... 39 0.022
UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcrip... 39 0.029
UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa] 39 0.029
UniRef100_Q9LDL8 Hypothetical protein AT4g08830 [Arabidopsis tha... 38 0.050
UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa] 38 0.065
UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcrip... 37 0.085
UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcrip... 37 0.085
UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum] 37 0.11
UniRef100_Q9SK98 Very similar to retrotransposon reverse transcr... 37 0.11
UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana] 37 0.11
UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana] 37 0.11
UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcrip... 37 0.14
>UniRef100_Q9SHY0 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 42.0 bits (97), Expect = 0.003
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
HLV+W KV + K GGL VR + N AL+ K WR+ Q++ +
Sbjct: 194 HLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSL 237
>UniRef100_Q8LMT3 Putative retroelement [Oryza sativa]
Length = 764
Score = 40.8 bits (94), Expect = 0.008
Identities = 17/43 (39%), Positives = 29/43 (66%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRK 45
+H+++WE + K+ GGL +TRK NIALL K ++R+ ++
Sbjct: 373 YHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKE 415
>UniRef100_Q5W741 Hypothetical protein OJ1005_D04.5 [Oryza sativa]
Length = 697
Score = 40.8 bits (94), Expect = 0.008
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
H + WEK+T+ K GGL R+TR N ALL + WR+
Sbjct: 271 HWISWEKLTSPKLHGGLGFRDTRSFNQALLARQAWRL 307
>UniRef100_O23410 STRONG homology to reverse transcriptase [Arabidopsis thaliana]
Length = 929
Score = 40.8 bits (94), Expect = 0.008
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC*RA--SI*KIH- 60
HL+ W+KV K GGL +R ++ N ALL K WR+ D+ + A R + +H
Sbjct: 635 HLLSWKKVCRPKAAGGLGLRASKDMNRALLAKVGWRLLNDKVSLWARVLRRKYKVTDVHD 694
Query: 61 NSWSVKLKV---TCRTLGTSL 78
+SW V T R++G L
Sbjct: 695 SSWLVPKATWSSTWRSIGVGL 715
>UniRef100_Q7XHD1 Putative retroelement [Oryza sativa]
Length = 988
Score = 40.0 bits (92), Expect = 0.013
Identities = 22/49 (44%), Positives = 27/49 (54%), Gaps = 2/49 (4%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI*AEC 51
+H+VRWE + KD GGL TR NIALL K W + + C A C
Sbjct: 787 YHMVRWEALCRPKDFGGLGFSNTRVMNIALLSK--WIIKLESGCNDACC 833
>UniRef100_Q75GM6 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1614
Score = 39.7 bits (91), Expect = 0.017
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM--SQDRKCI 47
+H+V+WE + KD GGL ETR+ N ALL K + ++ D CI
Sbjct: 1461 YHMVKWEDLAFPKDYGGLGFTETRRMNTALLAKWIMKIESEDDSLCI 1507
>UniRef100_Q9XE45 Putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 39.3 bits (90), Expect = 0.022
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
HL+ W++V + GGL +R+ + N ALL K WR+ QD
Sbjct: 362 HLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQD 401
>UniRef100_Q7XNY0 OSJNBb0015N08.11 protein [Oryza sativa]
Length = 1026
Score = 39.3 bits (90), Expect = 0.022
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 3 WHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
+HLV W V + +D GGL V + N A+LGK +WR+ +
Sbjct: 642 YHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENE 682
>UniRef100_O82276 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 39.3 bits (90), Expect = 0.022
Identities = 17/44 (38%), Positives = 26/44 (58%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
HL+ W K+ K GG+ +R R N AL+ K WR+ QD++ +
Sbjct: 700 HLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESL 743
>UniRef100_Q9SHP2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 38.9 bits (89), Expect = 0.029
Identities = 17/37 (45%), Positives = 23/37 (61%)
Query: 6 VRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
V W K+ + K GGL +R+ + NIALL K WR+ Q
Sbjct: 294 VAWSKLNDPKKMGGLAIRDLKDFNIALLAKQSWRILQ 330
>UniRef100_Q7XLZ5 OSJNBa0086O06.14 protein [Oryza sativa]
Length = 1205
Score = 38.9 bits (89), Expect = 0.029
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM--SQDRKC 46
H + WEK+T+ K GGL R+ R N ALL + WR+ S D C
Sbjct: 825 HWIAWEKLTSPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLC 869
>UniRef100_Q9LDL8 Hypothetical protein AT4g08830 [Arabidopsis thaliana]
Length = 947
Score = 38.1 bits (87), Expect = 0.050
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDR 44
HLV W++V K GGL +R ++ N AL+ K WR+ DR
Sbjct: 514 HLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDR 554
>UniRef100_Q8S6P1 Putative reverse transcriptase [Oryza sativa]
Length = 1509
Score = 37.7 bits (86), Expect = 0.065
Identities = 17/40 (42%), Positives = 24/40 (59%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
H + W K+T K+ GGL R+ N+A+L K WR+ QD
Sbjct: 1038 HWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQD 1077
>UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 37.4 bits (85), Expect = 0.085
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQ 42
H V WEK+ K+ GGL R+ N ALL K WR+ Q
Sbjct: 613 HWVSWEKLCLAKESGGLGFRDIESFNQALLAKQSWRILQ 651
>UniRef100_Q9SJ38 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1229
Score = 37.4 bits (85), Expect = 0.085
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 1 TCWHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRM 40
T W V W K+TN K+ GGL R+ + N +LL K WR+
Sbjct: 731 TSW--VAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRL 768
>UniRef100_Q5XWR0 Hypothetical protein [Solanum tuberosum]
Length = 327
Score = 37.0 bits (84), Expect = 0.11
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQD 43
HLV+W KVT K GGL +++ N LL K WR +Q+
Sbjct: 122 HLVKWAKVTLPKQYGGLGIKDLALHNKCLLLKWHWRYNQE 161
>UniRef100_Q9SK98 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 37.0 bits (84), Expect = 0.11
Identities = 18/44 (40%), Positives = 24/44 (53%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
H + WEK+ K+ GGL R+ N ALL K WR+ Q C+
Sbjct: 685 HWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCL 728
>UniRef100_Q9FYK1 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 37.0 bits (84), Expect = 0.11
Identities = 17/44 (38%), Positives = 23/44 (51%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
H WE++ KD GGL R+ + N ALL K WR+ C+
Sbjct: 800 HWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCL 843
>UniRef100_Q9FXJ5 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 37.0 bits (84), Expect = 0.11
Identities = 17/44 (38%), Positives = 23/44 (51%)
Query: 4 HLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
H WE++ KD GGL R+ + N ALL K WR+ C+
Sbjct: 803 HWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCL 846
>UniRef100_Q9ZQM0 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1044
Score = 36.6 bits (83), Expect = 0.14
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 2 CWHLVRWEKVTNEKDCGGLRVRETRKGNIALLGKPVWRMSQDRKCI 47
CW + W K+ K GGL ++ N ALL K WR+ Q C+
Sbjct: 663 CW--IAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSCV 706
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.341 0.146 0.527
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,108,093
Number of Sequences: 2790947
Number of extensions: 4573202
Number of successful extensions: 9475
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9426
Number of HSP's gapped (non-prelim): 51
length of query: 106
length of database: 848,049,833
effective HSP length: 82
effective length of query: 24
effective length of database: 619,192,179
effective search space: 14860612296
effective search space used: 14860612296
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0023.3