BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0022.11
(334 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q7XBC6 Putative copia-type pol polyprotein [Zea mays] 350 3e-95
UniRef100_Q8H6I8 Putative gag-pol polyprotein [Zea mays] 349 5e-95
UniRef100_Q7XET2 Hypothetical protein [Oryza sativa] 348 9e-95
UniRef100_Q9XEJ4 Copia-type pol polyprotein [Zea mays] 348 2e-94
UniRef100_Q852C7 Putative gag-pol polyprotein [Oryza sativa] 346 6e-94
UniRef100_Q8H7T1 Putative Zea mays retrotransposon Opie-2 [Oryza... 345 1e-93
UniRef100_Q7XPI7 OSJNBb0004A17.2 protein [Oryza sativa] 345 1e-93
UniRef100_Q7XP45 OSJNBa0063G07.6 protein [Oryza sativa] 343 5e-93
UniRef100_Q8LMY8 Putative polyprotein [Oryza sativa] 342 8e-93
UniRef100_Q9SDD5 Similar to copia-type pol polyprotein [Oryza sa... 341 2e-92
UniRef100_Q75G80 Putative copia-type pol polyprotein [Oryza sativa] 340 4e-92
UniRef100_O24587 Pol protein [Zea mays] 339 5e-92
UniRef100_Q60DR2 Putative polyprotein [Oryza sativa] 339 7e-92
UniRef100_Q8S479 Putative pol protein [Zea mays] 338 9e-92
UniRef100_Q7XH54 Putative Zea mays retrotransposon Opie-2 [Oryza... 338 9e-92
UniRef100_Q8H8K3 Putative retroelement [Oryza sativa] 338 1e-91
UniRef100_Q8S7X8 Putative retroelement [Oryza sativa] 337 2e-91
UniRef100_Q8W0X4 Putative pol protein [Zea mays] 337 3e-91
UniRef100_Q6AUQ5 Putative polyprotein [Oryza sativa] 336 5e-91
UniRef100_Q84MV2 Putative gag-pol polyprotein [Oryza sativa] 333 3e-90
>UniRef100_Q7XBC6 Putative copia-type pol polyprotein [Zea mays]
Length = 1760
Score = 350 bits (898), Expect = 3e-95
Identities = 173/312 (55%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGELKYFLG QV Q E T+I Q+KYT+
Sbjct: 1441 QIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFISQTKYTQ 1500
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L KF M + P KTPM L+ + V QK+YR MIGSLLYL ASRPDI+ SV
Sbjct: 1501 DILSKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVC 1560
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E+HLT VKRIL+YL T GL Y + S + L GY DAD+AG + RKST
Sbjct: 1561 MCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLLGYSDADWAGCKINRKST 1620
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q+LWM+ L DY + + +
Sbjct: 1621 SGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPL 1680
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI ++YHF+RD+ QKG + + +++T Q ADIF+KPL E
Sbjct: 1681 LCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDE 1740
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1741 QTFTKLRHELNI 1752
>UniRef100_Q8H6I8 Putative gag-pol polyprotein [Zea mays]
Length = 1892
Score = 349 bits (896), Expect = 5e-95
Identities = 173/312 (55%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGELKYFLG QV Q E T+I Q+KYT+
Sbjct: 1573 QIYVDDIIFGSTNESTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQ 1632
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L KF M + P KTPM L+ + V QK+YR MIGSLLYL ASRPDI+ SV
Sbjct: 1633 DILAKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVC 1692
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E+HLT VKRIL+YL T GL Y + S + L GY DAD+AG + RKST
Sbjct: 1693 MCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKST 1752
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q+LWM+ L DY + + +
Sbjct: 1753 SGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLRDYGYKLTKVPL 1812
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI ++YHF+RD+ QKG + + +++T Q ADIF+KPL E
Sbjct: 1813 LCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDE 1872
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1873 QSFTRLRHELNI 1884
>UniRef100_Q7XET2 Hypothetical protein [Oryza sativa]
Length = 1419
Score = 348 bits (894), Expect = 9e-95
Identities = 163/312 (52%), Positives = 230/312 (73%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG + + +F++ M+ EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 1101 QIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 1160
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L++F M C P TP+ T +L+ ++ V QK YR MIGSLLYLTASRPDI F+V
Sbjct: 1161 DLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVC 1220
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 1221 LCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKST 1280
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY I + +
Sbjct: 1281 SGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGITFEKVPL 1340
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HSR KHI++++HF+RD+V+KG + L+F+DT Q ADIF+KPL
Sbjct: 1341 FCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDS 1400
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 1401 NRFAFLRGELGV 1412
>UniRef100_Q9XEJ4 Copia-type pol polyprotein [Zea mays]
Length = 1063
Score = 348 bits (892), Expect = 2e-94
Identities = 173/312 (55%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGELKYFLG QV Q E T+I Q+KYT+
Sbjct: 744 QIYVDDIIFGSTNKSTCEEFSRIMTQKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQ 803
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L KF M + P KTPM L+ + V QK+YR MIGSLLYL ASRPDI+ SV
Sbjct: 804 DILTKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVC 863
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E+HLT VKRIL+YL T GL Y + S + L GY DAD+AG + RKST
Sbjct: 864 MCARFQSDPKESHLTAVKRILRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKST 923
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSWASK+Q+++ALSTAEAEYI+A C Q+LWM+ L DY + + +
Sbjct: 924 SGTCQFLGRSLVSWASKKQNSVALSTAEAEYIAAGHCCAQLLWMRQTLLDYGYKLTKVPL 983
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI ++YHF+RD+ QKG + + +++T Q ADIF+KPL E
Sbjct: 984 LCDNESAIKMADNPVEHSRTKHIAIRYHFLRDHQQKGDIEISYINTKDQLADIFTKPLDE 1043
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1044 QSFTRLRHELNI 1055
>UniRef100_Q852C7 Putative gag-pol polyprotein [Oryza sativa]
Length = 1969
Score = 346 bits (887), Expect = 6e-94
Identities = 166/312 (53%), Positives = 228/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +FS +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1477 QIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1536
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1537 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1596
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1597 LCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1656
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1657 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1716
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1717 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1776
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1777 SRFEFLRSELGV 1788
>UniRef100_Q8H7T1 Putative Zea mays retrotransposon Opie-2 [Oryza sativa]
Length = 2145
Score = 345 bits (884), Expect = 1e-93
Identities = 165/312 (52%), Positives = 228/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +FS +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1477 QIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1536
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1537 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1596
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKR+ +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1597 LCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1656
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1657 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1716
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1717 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1776
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1777 SRFEFLRSELGV 1788
>UniRef100_Q7XPI7 OSJNBb0004A17.2 protein [Oryza sativa]
Length = 1877
Score = 345 bits (884), Expect = 1e-93
Identities = 165/312 (52%), Positives = 228/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG ++ L +FS +M EFEMSMMGEL +FLG+Q+ Q E ++HQ+KY+K
Sbjct: 1559 QIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSK 1618
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
E LKKF+M +C P TPM T L ++ +V Q+ YR MIGSLLYLTASRPDI FSV
Sbjct: 1619 ELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVC 1678
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKR+ +Y+K T G+ Y SS + + DAD+AG + +RKST
Sbjct: 1679 LCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKST 1738
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++LVSW+S++QS++A STAEAEY++AA +Q+LWM L+DY + S + +
Sbjct: 1739 SGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPL 1798
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDNT+AI+++KN + HSR KHIE++YHF+RD V+KG ++L+FV+++ Q ADIF+KPL
Sbjct: 1799 LCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1858
Query: 316 DRFKFILKNLNM 327
RF+F+ L +
Sbjct: 1859 SRFEFLRSELGV 1870
>UniRef100_Q7XP45 OSJNBa0063G07.6 protein [Oryza sativa]
Length = 1539
Score = 343 bits (879), Expect = 5e-93
Identities = 166/312 (53%), Positives = 223/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FLG+Q+ Q + T++ Q+KY K
Sbjct: 1221 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKDGTFVSQTKYIK 1280
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ ++ V KLYR MIGSLLYLTASRPDI+FSV
Sbjct: 1281 DLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVC 1340
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA FQ+ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D+DYAG + +R ST
Sbjct: 1341 MCAWFQAAPKECHLVAVKRILRYLKYSSTIGLWYPKGAKFKLVGYSDSDYAGCKVDRNST 1400
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+LWMK L DY I + +
Sbjct: 1401 SGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPL 1460
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1461 LCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDE 1520
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1521 TRFCKLRNELNV 1532
>UniRef100_Q8LMY8 Putative polyprotein [Oryza sativa]
Length = 1584
Score = 342 bits (877), Expect = 8e-93
Identities = 166/312 (53%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FLG+Q+ Q + T++ Q+KY K
Sbjct: 1266 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIK 1325
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ + V KLYR MIGSLLYLTASRPDI+FSV
Sbjct: 1326 DLLKRFGLEDAKPIKTPMATNGHLDLDKGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVC 1385
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ+ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D+DYA + +RKST
Sbjct: 1386 MCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYASCKVDRKST 1445
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+LWMK L DY I + +
Sbjct: 1446 SGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPL 1505
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1506 LCDNDRAIKIANNPVQHSRTKHIDIRHHFLRDHVTKCDIVISHIRTEDQLADIFTKPLNE 1565
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1566 TRFCKLRNELNV 1577
>UniRef100_Q9SDD5 Similar to copia-type pol polyprotein [Oryza sativa]
Length = 940
Score = 341 bits (874), Expect = 2e-92
Identities = 170/312 (54%), Positives = 219/312 (69%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N +EFS+MM FEMSMMGELK+FLG+Q+ Q E T+I Q+KY K
Sbjct: 622 QIYVDDIIFGSTNKSFSEEFSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKYLK 681
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LKKF M P TPM L+ + V QK+YR +IGSLLYL ASRPDI+ SV
Sbjct: 682 DMLKKFGMENAKPIHTPMPSNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVC 741
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ+ P+E HL VKRIL+YL T NLGL Y K + + L GY DADYAG + +RKST
Sbjct: 742 MCARFQAAPKECHLVAVKRILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKST 801
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSW+SK+Q+++ALSTAEAEYIS C Q++WMK L DY + S I +
Sbjct: 802 SGTCQFLGRSLVSWSSKKQNSVALSTAEAEYISTGSCCAQLIWMKQTLRDYGLNVSKIPL 861
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+ +G + ++ V D Q ADIF+KPL E
Sbjct: 862 LCDNESAIKIANNPVQHSRTKHIDIRHHFLRDHSTRGDIDIQHVRIDKQLADIFTKPLDE 921
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 922 ARFCELRSELNI 933
>UniRef100_Q75G80 Putative copia-type pol polyprotein [Oryza sativa]
Length = 649
Score = 340 bits (871), Expect = 4e-92
Identities = 162/312 (51%), Positives = 226/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG + L EF++ M EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 331 QIYVDDIIFGCSTHALVVEFAEAMCREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 390
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L++F M C TP+ T +L+ + V QK YR MIGSLLYLTASRPDI F +
Sbjct: 391 DLLRRFKMENCKQISTPIGSTAVLDPVEDGEVVNQKEYRSMIGSLLYLTASRPDIQFVMC 450
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 451 LCARFQASPRASHRQAVKRIMRYLNHTLEFGMWYSTSSSICLSGYSDADFGGCRIDRKST 510
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY + +++
Sbjct: 511 SGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVTL 570
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HSR KHI++ +HF+RD+V+KG + L+F+DT Q ADIF+KPL
Sbjct: 571 FCDNTSAINIAKNPVHHSRTKHIDICFHFLRDHVEKGDVELQFLDTKLQIADIFTKPLDS 630
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 631 NRFAFLRGELGV 642
>UniRef100_O24587 Pol protein [Zea mays]
Length = 1068
Score = 339 bits (870), Expect = 5e-92
Identities = 169/312 (54%), Positives = 220/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGEL YFLG QV Q + T+I Q+KYT+
Sbjct: 750 QIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQ 809
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F M + PAKTPM + V QK YR MIGSLLYL ASRPDI+ SV
Sbjct: 810 DLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 869
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E HL VKRIL+YL T GL Y K S + L GY D+DYAG + +RKST
Sbjct: 870 MCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKST 929
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSW SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+ S + +
Sbjct: 930 SGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPL 989
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI +++N + HSR KHI++++HF+RD+ QKG + + V T++Q ADIF+KPL E
Sbjct: 990 LCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDE 1049
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1050 KTFCRLRSELNV 1061
>UniRef100_Q60DR2 Putative polyprotein [Oryza sativa]
Length = 1577
Score = 339 bits (869), Expect = 7e-92
Identities = 164/312 (52%), Positives = 219/312 (69%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FLG+Q+ Q T++ Q+KY K
Sbjct: 1259 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKNGTFVSQTKYIK 1318
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ ++ V KLYR MIGSLLYLT SRPDI+FSV
Sbjct: 1319 DLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTVSRPDIMFSVC 1378
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ+ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D DYAG + +RKST
Sbjct: 1379 MCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDPDYAGCKVDRKST 1438
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
+CQ LG +LVSW+SK+Q+++ALSTAE EY+SA C Q+LWMK L DY I + +
Sbjct: 1439 SSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLWMKQTLLDYGISFTKTPL 1498
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1499 LCDNDGAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIFTKPLDE 1558
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1559 TRFCKLRNELNI 1570
>UniRef100_Q8S479 Putative pol protein [Zea mays]
Length = 1553
Score = 338 bits (868), Expect = 9e-92
Identities = 165/312 (52%), Positives = 221/312 (69%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEM MMGEL YFLG QV Q + T+I Q+KYT+
Sbjct: 1235 QIYVDDIIFGSTNQKSCEEFSRVMTQKFEMPMMGELSYFLGFQVKQLKDGTFISQTKYTQ 1294
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ +K+F M + PAKTPM ++ V QK YR MIGSLLYL ASRPDI+ SV
Sbjct: 1295 DLIKRFGMKDAKPAKTPMGTDGHIDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 1354
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDPRE HL VKRIL+YL T G+ Y K S + L GY D+DYAG + +RKST
Sbjct: 1355 MCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDYAGCKVDRKST 1414
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSW+SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+ + + +
Sbjct: 1415 SGTCQFLGRSLVSWSSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLNKVPL 1474
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+ QKG + + +V T++Q ADIF+KPL E
Sbjct: 1475 LCDNESAIRMADNPVEHSRTKHIDIRHHFLRDHQQKGDIEVFYVSTENQLADIFTKPLDE 1534
Query: 316 DRFKFILKNLNM 327
F + +N+
Sbjct: 1535 STFCRLRSEINV 1546
>UniRef100_Q7XH54 Putative Zea mays retrotransposon Opie-2 [Oryza sativa]
Length = 494
Score = 338 bits (868), Expect = 9e-92
Identities = 160/312 (51%), Positives = 225/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIF ++ L EF++ M+ EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 176 QIYVDDIIFDCSSHALVVEFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 235
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L+ F M C P TP+ +L+ ++ V QK YR MIGSLLYLTA RPDI F V
Sbjct: 236 DLLRWFKMENCKPISTPIGSIAVLDPDEDGEAVNQKEYRSMIGSLLYLTAYRPDIQFVVC 295
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 296 LCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKST 355
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+DY + + +
Sbjct: 356 SGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKDYGLTFEKVPL 415
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HS KHI++++HF+RD+V+KG + L+F+DT Q ADIF+KPL
Sbjct: 416 FCDNTSAINIAKNPVQHSHTKHIDIRFHFLRDHVEKGDVELQFLDTKLQLADIFTKPLDS 475
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 476 NRFAFLRGELGI 487
>UniRef100_Q8H8K3 Putative retroelement [Oryza sativa]
Length = 1299
Score = 338 bits (867), Expect = 1e-91
Identities = 165/312 (52%), Positives = 222/312 (70%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FL +Q+ Q + T++ Q+KY K
Sbjct: 981 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLRLQIKQLKDGTFLSQTKYIK 1040
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ ++ V KLY MIGSLLYLTASRPDI+FSV
Sbjct: 1041 DLLKRFGLEDAKPIKTPMVTNGHLDLDEGGKPVDLKLYHSMIGSLLYLTASRPDIMFSVC 1100
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ P+E HL VKRIL+YLK ++ +GL Y K + +KL GY D+DYAG + +RKST
Sbjct: 1101 MCARFQVAPKECHLVAVKRILRYLKHSSIIGLWYPKGAKFKLVGYSDSDYAGCKVDRKST 1160
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+LWMK L DY I + +
Sbjct: 1161 SGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQILLDYGISFTKTPL 1220
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN +AI ++ N + HSR KHI++++HF+RD+V K +++ + T+ Q ADIF+KPL E
Sbjct: 1221 LCDNDSAIKIANNPVQHSRTKHIDIRHHFLRDHVVKSDIVISHIRTEDQLADIFTKPLDE 1280
Query: 316 DRFKFILKNLNM 327
RF + LN+
Sbjct: 1281 TRFCKLRNELNV 1292
>UniRef100_Q8S7X8 Putative retroelement [Oryza sativa]
Length = 1522
Score = 337 bits (865), Expect = 2e-91
Identities = 158/312 (50%), Positives = 226/312 (71%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFG + L +F+++M EF+MSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 1204 QIYVDDIIFGCSTHALVVDFAEIMHREFKMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 1263
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L++F M C P TP+ T +L+ ++ V QK YR MIGSLLYLTASRP I F+V
Sbjct: 1264 DLLRRFKMENCKPISTPIGSTVVLDSDEDGEAVDQKEYRSMIGSLLYLTASRPGIQFAVC 1323
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LC +FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 1324 LCVRFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSGYSDADFRGCRIDRKST 1383
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG +L++W+S++QS++A STAE+EY++AA C +Q+LW+ L+ Y + + +
Sbjct: 1384 SGTCHFLGKSLIAWSSRKQSSVAQSTAESEYVAAASCCSQILWLLSTLKYYGLTFEKVPL 1443
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KNL+ HSR KH ++++HF+RD+V+KG + L+F+DT Q A+IF+KPL
Sbjct: 1444 FCDNTSAINIAKNLVQHSRTKHNDIRFHFLRDHVEKGDVELQFLDTKLQIANIFTKPLDS 1503
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 1504 NRFAFLRGELGI 1515
>UniRef100_Q8W0X4 Putative pol protein [Zea mays]
Length = 1657
Score = 337 bits (864), Expect = 3e-91
Identities = 168/312 (53%), Positives = 219/312 (69%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N C+EFS++M +FEMSMMGEL YFLG QV Q + T+I Q+KYT+
Sbjct: 1339 QIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYFLGFQVKQLKDGTFISQTKYTQ 1398
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F M + PAKTPM + V QK YR MIGSLLYL ASRPDI+ SV
Sbjct: 1399 DLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSMIGSLLYLCASRPDIMLSVC 1458
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQSDP+E HL VKRIL+YL T GL Y K S + L GY D+DYAG + +RKST
Sbjct: 1459 MCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGSTFDLVGYSDSDYAGCKVDRKST 1518
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G CQFLG +LVSW SK+Q+++ALSTAEAEY++A C Q+LWM+ L D+ S + +
Sbjct: 1519 SGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCAQLLWMRQTLRDFGYNLSKVPL 1578
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
CDN + I +++N + HSR KHI++++HF+RD+ QKG + + V T++Q ADIF+KPL E
Sbjct: 1579 LCDNESDIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDIEVFHVSTENQLADIFTKPLDE 1638
Query: 316 DRFKFILKNLNM 327
F + LN+
Sbjct: 1639 KTFCRLRSELNV 1650
>UniRef100_Q6AUQ5 Putative polyprotein [Oryza sativa]
Length = 1398
Score = 336 bits (862), Expect = 5e-91
Identities = 158/312 (50%), Positives = 227/312 (72%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIF + L +F+++M+ EFEMSMMGEL YFLG+Q+ Q P+ T++HQ+KYTK
Sbjct: 1080 QIYVDDIIFSCSTHALVVDFAEIMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTK 1139
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ L++ M C P TP+ T +L+ ++ V QK YR MIG LLYLTASRPDI F+V
Sbjct: 1140 DLLRRLKMKNCKPISTPIGSTAMLDPDEDGEAVDQKEYRSMIGFLLYLTASRPDIQFAVC 1199
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
LCA+FQ+ PR +H VKRI++YL T G+ Y SS LSGY DAD+ G R +RKST
Sbjct: 1200 LCARFQASPRASHRQAVKRIMRYLNHTLEFGICYSTSSSICLSGYSDADFGGCRIDRKST 1259
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G C FLG++L++W+S++QS++A STA++EY++AA C +Q+LW+ L+DY + + +
Sbjct: 1260 SGTCYFLGTSLIAWSSRKQSSVAQSTAKSEYVAAASCCSQILWLLSTLKDYGLTFEKVPL 1319
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFSKPLAE 315
+CDNT+AI+++KN + HSR KHI++ ++F+RD+V+KG + L+F+DT Q ADIF+KPL
Sbjct: 1320 FCDNTSAINIAKNPVQHSRTKHIDICFYFLRDHVEKGDVELQFLDTKLQIADIFTKPLDS 1379
Query: 316 DRFKFILKNLNM 327
+RF F+ L +
Sbjct: 1380 NRFAFLCGELGI 1391
>UniRef100_Q84MV2 Putative gag-pol polyprotein [Oryza sativa]
Length = 1975
Score = 333 bits (855), Expect = 3e-90
Identities = 162/313 (51%), Positives = 222/313 (70%), Gaps = 1/313 (0%)
Query: 16 QIYVDDIIFGSANTFLCKEFSKMMQAEFEMSMMGELKYFLGIQVDQQPEATYIHQSKYTK 75
QIYVDDIIFGS N CKEF MM EFEMSM+GEL +FLG+Q+ Q + T++ Q+KY K
Sbjct: 1656 QIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMVGELSFFLGLQIKQLKDGTFVSQTKYIK 1715
Query: 76 EFLKKFNMTECTPAKTPMHPTCILEKEDVSAKVCQKLYRGMIGSLLYLTASRPDILFSVH 135
+ LK+F + + P KTPM L+ ++ V KLY MIGSLLYLTASRPDI+FSV
Sbjct: 1716 DLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYHSMIGSLLYLTASRPDIMFSVC 1775
Query: 136 LCAQFQSDPRETHLTTVKRILKYLKGTTNLGLMYKKSS*YKLSGYCDADYAGDRTERKST 195
+CA+FQ+ P++ HL VKRIL+YLK ++ +GL Y K + +K+ Y D DYA + +RKST
Sbjct: 1776 MCARFQAAPKKCHLVAVKRILRYLKHSSTIGLWYPKGAKFKIVSYSDLDYAVCKVDRKST 1835
Query: 196 YGNCQFLGSNLVSWASKRQSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESNISI 255
G+CQ LG +LVSW+SK+Q+++ALSTAEAEY+SA C Q+LWMK L DY I + +
Sbjct: 1836 SGSCQMLGRSLVSWSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLLDYGISFTKTPL 1895
Query: 256 YCDNTAAISLSKNLILHSRAKHIEVKYHFIRDY-VQKGVLLLKFVDTDHQWADIFSKPLA 314
CDN +AI ++ N + HSR KHI+++YHF++D+ V K +++ + T++Q ADIF+KPL
Sbjct: 1896 LCDNDSAIKIANNPVQHSRTKHIDIRYHFLKDHVVAKSDIVISHIRTENQLADIFTKPLD 1955
Query: 315 EDRFKFILKNLNM 327
E RF + LN+
Sbjct: 1956 ETRFCKLRNELNV 1968
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.325 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,661,681
Number of Sequences: 2790947
Number of extensions: 20357887
Number of successful extensions: 56819
Number of sequences better than 10.0: 857
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 54648
Number of HSP's gapped (non-prelim): 1049
length of query: 334
length of database: 848,049,833
effective HSP length: 128
effective length of query: 206
effective length of database: 490,808,617
effective search space: 101106575102
effective search space used: 101106575102
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)
Lotus: description of TM0022.11