BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0011b.6
(189 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcrip... 59 5e-08
UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana] 55 1e-06
UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcrip... 54 3e-06
UniRef100_Q9LSE9 Reverse transcriptase-like protein [Arabidopsis... 53 4e-06
UniRef100_Q9SZD8 Hypothetical protein F19B15.120 [Arabidopsis th... 51 1e-05
UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcrip... 50 3e-05
UniRef100_O80781 Putative non-LTR retroelement reverse transcrip... 49 7e-05
UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis tha... 48 1e-04
UniRef100_Q60DM2 F-box domain containing protein [Oryza sativa] 48 1e-04
UniRef100_Q7Y193 Putative reverse transcriptase [Oryza sativa] 48 1e-04
UniRef100_O65246 F21E10.8 protein [Arabidopsis thaliana] 47 2e-04
UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcrip... 47 3e-04
UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcrip... 47 3e-04
UniRef100_Q9SF52 Putative non-LTR reverse transcriptase [Arabido... 47 3e-04
UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcrip... 47 3e-04
UniRef100_O22148 Putative non-LTR retroelement reverse transcrip... 45 0.001
UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcrip... 45 0.001
UniRef100_O65244 F21E10.5 protein [Arabidopsis thaliana] 44 0.002
UniRef100_O64712 Putative reverse transcriptase [Arabidopsis tha... 44 0.002
UniRef100_Q6L3U7 Putative RNase H domain containing protein [Sol... 44 0.003
>UniRef100_Q9SLE9 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 59.3 bits (142), Expect = 5e-08
Identities = 43/169 (25%), Positives = 71/169 (41%), Gaps = 10/169 (5%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWF-----ASSLSLRVNLFATVEDFV 59
L R + GC C E+ET+ HL + P VW A + ++F+ + +
Sbjct: 1025 LRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVWALSLIQAPATGFGTSIFSNINHVI 1084
Query: 60 SEMVREGMPEVLAAVQT-MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHESP 118
G+P + V +L+ IW+++N +FQ ++A A + W+ E
Sbjct: 1085 QNSQNFGIPRHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYEECNLWINAQEKS 1144
Query: 119 HAGRELPS--RWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVL 164
G PS +W P +K N+ A +AG+ V RD +VL
Sbjct: 1145 SGGVS-PSEHKWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVL 1192
>UniRef100_O81630 F8M12.22 protein [Arabidopsis thaliana]
Length = 1662
Score = 54.7 bits (130), Expect = 1e-06
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 2 RSALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLS-LRVNLFA-TVEDFV 59
RS L+ R +++DP C C E ET+ H+ P +W S+ L + F+ E+ +
Sbjct: 1386 RSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASIWGLSNFPWLPGHTFSQDTEENI 1445
Query: 60 SEMVREGMPEVLAAVQT-----MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR- 113
S ++ L Q +++ +W+++N LVF + S V+ A + W++
Sbjct: 1446 SFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNKFSESCSRVVTQTEAEVNEWLQS 1505
Query: 114 ------VHESPHAGRELPSRWKRPATRAVKVNLDA 142
+ RWK+P VK N DA
Sbjct: 1506 VNRREDASVLTRSSHRANVRWKKPVFPLVKCNFDA 1540
>UniRef100_Q9FW98 Putative non-LTR retroelement reverse transcriptase [Oryza sativa]
Length = 1382
Score = 53.5 bits (127), Expect = 3e-06
Identities = 48/195 (24%), Positives = 85/195 (42%), Gaps = 17/195 (8%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFA----SSLSLRVNLFATVEDFVS 60
L +R + GC C N +T+EH+FL P +W ++ L N F+T+ ++
Sbjct: 1093 LRRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIF 1151
Query: 61 EMVREGMPEVLAAVQTMLYAIWESQ------NGLVF-QRMSFDMGWVLAWAVALGSGWVR 113
+ ++ G + + IWE++ NG V QR+ +L++ + +
Sbjct: 1152 DFLKRGSSHANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIK---ILSYVDMILKHNTK 1208
Query: 114 VHESPHAGR-ELPSRWKRPATRAVKVNLDARVHDGSMA-GLVLVARDENEEVLEATSSYP 171
+ G + RW+ P +N DA + S G+ + RD + L A S
Sbjct: 1209 TVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMI 1268
Query: 172 WPILSPLLAEALSLR 186
++ P LAEAL++R
Sbjct: 1269 SDVVLPELAEALAIR 1283
>UniRef100_Q9LSE9 Reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 343
Score = 53.1 bits (126), Expect = 4e-06
Identities = 47/175 (26%), Positives = 74/175 (41%), Gaps = 19/175 (10%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL------SLRVNLFATVEDF 58
L +R + P C C E ET +HLF + VW AS + + + + +E
Sbjct: 45 LKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELL 104
Query: 59 VSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW------- 111
+S + P++ +L+ +W+S+N LVFQ+ S L A W
Sbjct: 105 LSSCLANRQPQLFNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTNTYV 164
Query: 112 ----VRVHESPHAGRELP-SRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDEN 160
+VH S H + ++W+RP + +K N D A H A + RDEN
Sbjct: 165 QSLNQQVHSSRHQQPTMARTKWQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDEN 219
>UniRef100_Q9SZD8 Hypothetical protein F19B15.120 [Arabidopsis thaliana]
Length = 575
Score = 51.2 bits (121), Expect = 1e-05
Identities = 55/206 (26%), Positives = 85/206 (40%), Gaps = 26/206 (12%)
Query: 4 ALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL----------SLRVNLFA 53
AL R + + C C + ET+ HL + W SS+ S+ VNL+
Sbjct: 283 ALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSIYVNLYW 342
Query: 54 TVEDFVSEMVREGMPEVLAAVQT---MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSG 110
+ G P+ A Q +L+ +W+++N LVF+ F+ VL A
Sbjct: 343 VFN------LGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEE 396
Query: 111 W-VRVH-----ESPHAGRELPSRWKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEV 163
W +R P R RW+ P + VK N DA + D G+ V R+E EV
Sbjct: 397 WRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEV 456
Query: 164 LEATSSYPWPILSPLLAEALSLRWSM 189
+ + S L AE ++RW++
Sbjct: 457 KWMGARALPKLKSVLEAELEAMRWAV 482
>UniRef100_Q9ZQG1 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 50.1 bits (118), Expect = 3e-05
Identities = 48/185 (25%), Positives = 77/185 (40%), Gaps = 34/185 (18%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL------RVNLFATVE-- 56
+I+R + +DP C ICG+E E+ H+ M VW S + ++FA ++
Sbjct: 849 IIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGVPTPEFGFQNASIFANIQFL 908
Query: 57 ------DFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSF--------DMGWVLA 102
V ++V+ P V L+ +W+++N L F ++F L
Sbjct: 909 FELKKMILVPDLVKRSWPWV-------LWRLWKNRNKLFFDGITFCPLNSIVKIQEDTLE 961
Query: 103 WAVALGSGWVRVHESPHAGRELP--SRWKRPATRAVKVNL-DARVHDGSMAGLVLVARDE 159
W A +RV ES R +P W+ P VK N+ A + G V RDE
Sbjct: 962 WFQA--QSQIRVSESEEGQRVIPFTHSWEPPPEGWVKCNIGSAWSGKKKVCGGAWVLRDE 1019
Query: 160 NEEVL 164
+ V+
Sbjct: 1020 HGSVI 1024
>UniRef100_O80781 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 292
Score = 48.9 bits (115), Expect = 7e-05
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 20/194 (10%)
Query: 13 DPGCAICGNEVETMEHLFLEFPMFLGVWFASSL----------SLRVNLFATVEDFVSEM 62
+ C C + ET+ HL + VW S + SL NL+ + E+
Sbjct: 9 EASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVLN---LEV 65
Query: 63 VREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE------ 116
+ ++ V +L+ +W+S+N L+F+ +D VL A+ W E
Sbjct: 66 EIPKLGKIGNLVPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKAS 125
Query: 117 SPHAGRELPSRWKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEVLEATSSYPWPIL 175
P R L +WK P + VK N DA + G+ + R+E+ VL +
Sbjct: 126 GPQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTK 185
Query: 176 SPLLAEALSLRWSM 189
+ L AE +LRW++
Sbjct: 186 NVLEAELEALRWAV 199
>UniRef100_Q9M1F2 Hypothetical protein F9K21.130 [Arabidopsis thaliana]
Length = 851
Score = 48.1 bits (113), Expect = 1e-04
Identities = 38/153 (24%), Positives = 62/153 (39%), Gaps = 16/153 (10%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVN--LFATVEDFVSEM 62
L R + +DPGC C E E++ H P W S L + L +ED +S +
Sbjct: 694 LTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNI 753
Query: 63 VREGMPEVLAAVQT-----MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
+ + Q +L+ IW+++N +VF + + A A + W+ ++
Sbjct: 754 LLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEWLNATQT 813
Query: 118 PHAGRELPSR--------WKRPATRAVKVNLDA 142
R LP R W +P +K N DA
Sbjct: 814 -QGPRRLPKRTTAAGNTTWVKPQMPYIKCNFDA 845
>UniRef100_Q60DM2 F-box domain containing protein [Oryza sativa]
Length = 855
Score = 47.8 bits (112), Expect = 1e-04
Identities = 48/195 (24%), Positives = 81/195 (40%), Gaps = 17/195 (8%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNL----FATVEDFVS 60
L +R + GC C N +T+EH+FL P +W V L F+T+ ++
Sbjct: 566 LPRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKRKCAVKLGRNGFSTMRHWIF 624
Query: 61 EMVREGMPEVLAAVQTMLYAIWESQN------GLVF-QRMSFDMGWVLAWA-VALGSGWV 112
+ ++ G + + IWE++N G V QR+ +L++ + L
Sbjct: 625 DFLKRGSSHTNTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIK---ILSYVDMILKHNTK 681
Query: 113 RVHESPHAGRELPSRWKRPATRAVKVNLDARVHDGSMA-GLVLVARDENEEVLEATSSYP 171
V + RW+ +N DA + S G+ + RD + L A S
Sbjct: 682 TVDGQRGENTQAIPRWQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMI 741
Query: 172 WPILSPLLAEALSLR 186
++ P LAEAL++R
Sbjct: 742 SDVVLPELAEALAIR 756
>UniRef100_Q7Y193 Putative reverse transcriptase [Oryza sativa]
Length = 404
Score = 47.8 bits (112), Expect = 1e-04
Identities = 48/195 (24%), Positives = 81/195 (40%), Gaps = 17/195 (8%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNL----FATVEDFVS 60
L +R + GC C N +T+EH+FL P +W V L F+T+ ++
Sbjct: 115 LPRRHIPSTDGCVFC-NRDDTVEHVFLFCPFAAQIWEEIKRKCAVKLGRNGFSTMRHWIF 173
Query: 61 EMVREGMPEVLAAVQTMLYAIWESQN------GLVF-QRMSFDMGWVLAWA-VALGSGWV 112
+ ++ G + + IWE++N G V QR+ +L++ + L
Sbjct: 174 DFLKRGSSHTNTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIK---ILSYVDMILKHNTK 230
Query: 113 RVHESPHAGRELPSRWKRPATRAVKVNLDARVHDGSMA-GLVLVARDENEEVLEATSSYP 171
V + RW+ +N DA + S G+ + RD + L A S
Sbjct: 231 TVDGQRGENTQAIPRWQPLPAGVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMI 290
Query: 172 WPILSPLLAEALSLR 186
++ P LAEAL++R
Sbjct: 291 SDVVLPELAEALAIR 305
>UniRef100_O65246 F21E10.8 protein [Arabidopsis thaliana]
Length = 301
Score = 47.4 bits (111), Expect = 2e-04
Identities = 49/198 (24%), Positives = 80/198 (39%), Gaps = 16/198 (8%)
Query: 3 SALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFAT--VEDFVS 60
S L+ R + + P C+ C E E++ H+ P + +W S+L L T VE+ +S
Sbjct: 14 SRLVTRGMNISPYCSRCLTEEESICHVLFTCPYAMRIWRLSNLPQLTGLSITHDVEENIS 73
Query: 61 EM----VREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHE 116
+ + +++ IW++ N LV V+ VA W +
Sbjct: 74 LLDAYYNNNHTTQQKVIHFWLIWKIWKAHNNLVLNNYRECPSMVIQQTVAEVYDWTTIIN 133
Query: 117 SPHAGRELPSR--------WKRPATRAVKVNLDARVHDGSMAGL-VLVARDENEEVLEAT 167
A LP+R W + A VK N DA + + G+ + RD E
Sbjct: 134 GMQA-MSLPARIQTKGKTSWMKHAAPFVKCNFDAGFQENNEQGMGGWILRDHYGEAKAWG 192
Query: 168 SSYPWPILSPLLAEALSL 185
SS +++PL AE +L
Sbjct: 193 SSILDHVITPLDAETKAL 210
>UniRef100_Q9SKJ4 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 47.0 bits (110), Expect = 3e-04
Identities = 37/155 (23%), Positives = 60/155 (37%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLF---------ATV 55
L R + +DP C C E E++ H P W S SL N + +
Sbjct: 1455 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNI 1514
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 1515 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 1572
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 1573 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1606
>UniRef100_Q9SIQ5 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 47.0 bits (110), Expect = 3e-04
Identities = 37/155 (23%), Positives = 61/155 (38%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNL---------FATV 55
L R + +DP C C E E++ H P W+ S SL N + +
Sbjct: 1229 LTTRGMRIDPICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNI 1288
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 1289 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 1346
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 1347 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 1380
>UniRef100_Q9SF52 Putative non-LTR reverse transcriptase [Arabidopsis thaliana]
Length = 484
Score = 47.0 bits (110), Expect = 3e-04
Identities = 37/155 (23%), Positives = 60/155 (37%), Gaps = 20/155 (12%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLF---------ATV 55
L R + +DP C C E E++ H P W S SL N + +
Sbjct: 189 LTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNI 248
Query: 56 EDFVSEMVREGMPEVLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVH 115
+FV + ++L +++ IW+++N +VF + + A A W+
Sbjct: 249 LNFVQDTTMSDFHKLLPV--WLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNAT 306
Query: 116 ESPHAGRELPSR--------WKRPATRAVKVNLDA 142
+S H P+R W+ P VK N DA
Sbjct: 307 QS-HKKTPSPTRQIAENKIEWRNPPATYVKCNFDA 340
>UniRef100_Q7XJS2 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1344
Score = 46.6 bits (109), Expect = 3e-04
Identities = 42/191 (21%), Positives = 77/191 (39%), Gaps = 9/191 (4%)
Query: 8 RKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLS-----LRVNLFATVEDFVSEM 62
R + D GC +C E ET+ H+ E P+ VW + LS +++ + +
Sbjct: 1054 RGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLT 1113
Query: 63 VREGMPEVLAAVQT-MLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGW--VRVHESPH 119
+ +P L V +L+ +W+++N L+F+ ++ A W + H
Sbjct: 1114 QQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQND 1173
Query: 120 AGRELPSRWKRPATRAVKVNLD-ARVHDGSMAGLVLVARDENEEVLEATSSYPWPILSPL 178
++W P +K N+ A +G V RD +VL + + SP
Sbjct: 1174 EKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLLHSRRSFNEVHSPY 1233
Query: 179 LAEALSLRWSM 189
A+ S W++
Sbjct: 1234 SAKIRSWEWAL 1244
>UniRef100_O22148 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 45.1 bits (105), Expect = 0.001
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 3 SALIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSL------SLRVNLFATVE 56
S L R + + C C + ET+ HL + P W S L +LF +
Sbjct: 1079 SNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMH 1138
Query: 57 DFVSEMVREGMPEVL---AAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVR 113
+S V + PE A + +L+ +W+++N LVF+ F V+ A W
Sbjct: 1139 HVLS--VHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNN 1196
Query: 114 VHES----PHAGRELPSRWKRPATRAVKVNLDA---------------RVHDGSMAGLVL 154
E + R+ +W+ P+ VK N D R H G + L L
Sbjct: 1197 RKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGL 1256
Query: 155 VARDENEEVLEA-TSSYPWPILS 176
A + VLE + W +LS
Sbjct: 1257 RALPSQQSVLETEVEALRWAVLS 1279
>UniRef100_Q9ZQF8 Putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 44.7 bits (104), Expect = 0.001
Identities = 50/196 (25%), Positives = 83/196 (41%), Gaps = 13/196 (6%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL------RVNLFATVEDF 58
L R + + C CG E E++ HL P +W S + R +LF +
Sbjct: 953 LFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFL 1012
Query: 59 VSEMVREGMPE-VLAAVQTMLYAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
+S + E ++ +L+ IW+S+N +F+ + +L +A+ + W + +
Sbjct: 1013 LSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEANVWKQANSK 1072
Query: 118 PHAGRELPSR---WKRPATRAVKVNLDARVH-DGSMAGLVLVARDENEEVLEATSSYPWP 173
A P + P TR V DA H +++G V D++ +L S
Sbjct: 1073 EVATEYPPPQVVPANLPPTRNV-CQFDASWHLKDTLSGHGWVLVDQDIVLLLGLKS-ARK 1130
Query: 174 ILSPLLAEALSLRWSM 189
LSPL AE SL W+M
Sbjct: 1131 SLSPLHAEVDSLLWAM 1146
>UniRef100_O65244 F21E10.5 protein [Arabidopsis thaliana]
Length = 928
Score = 44.3 bits (103), Expect = 0.002
Identities = 24/79 (30%), Positives = 38/79 (47%), Gaps = 6/79 (7%)
Query: 15 GCAICGNEVETMEHLFLEFPMFLGVWFASSLSLRVNLFA----TVEDFVSEMVREGMPEV 70
GC +C N +ET +HLF G+W A + +L + T+ +VS + +
Sbjct: 802 GCVLCNNNLETRDHLFFSCAYTSGIWEALAKNLLQRSYTTDWQTIISYVSGQCHDRVSCF 861
Query: 71 LA--AVQTMLYAIWESQNG 87
LA +Q +Y IW +NG
Sbjct: 862 LARSVLQASVYTIWRERNG 880
>UniRef100_O64712 Putative reverse transcriptase [Arabidopsis thaliana]
Length = 365
Score = 43.9 bits (102), Expect = 0.002
Identities = 33/163 (20%), Positives = 67/163 (40%), Gaps = 19/163 (11%)
Query: 5 LIQRKVEVDPGCAICGNEVETMEHLFLEFPMFLGVWFASSLSL--RVNLFATVEDFVSEM 62
L R ++ DP C C E ET+ H+ P VW ++++ + + ++ ED ++ +
Sbjct: 64 LRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSVWRSANIIIGNQWGPPSSFEDNLNRL 123
Query: 63 VREGMPEVLAAVQTML-----YAIWESQNGLVFQRMSFDMGWVLAWAVALGSGWVRVHES 117
++ + ++ L + +W+S+N +FQ+ + + + W+ +E+
Sbjct: 124 IQLSKTQTTNSLDRFLPFWIMWRLWKSRNVFLFQQKCQSPDYEARKGIQDATEWLNANET 183
Query: 118 P------------HAGRELPSRWKRPATRAVKVNLDARVHDGS 148
R S+W P VK N D+ GS
Sbjct: 184 TENTNVHVATNPIQTSRRDSSQWNPPPEGWVKCNFDSGYTQGS 226
>UniRef100_Q6L3U7 Putative RNase H domain containing protein [Solanum demissum]
Length = 722
Score = 43.5 bits (101), Expect = 0.003
Identities = 47/205 (22%), Positives = 83/205 (39%), Gaps = 29/205 (14%)
Query: 12 VDPGCAICGN-EVETMEHLFLEFPMFLGVW--FASSLSLRVNLFATV---EDFVSEMVRE 65
+D C C N + ET+ H+FL + +W F +L + +T+ + + +
Sbjct: 223 IDSNCVCCKNMKTETINHVFLNSDVASYLWKKFGGTLGIDTRASSTINLLKTWWNVQTHN 282
Query: 66 GMPEVLAAVQTML--YAIWE--------SQNGLVFQRMSFDMGWVLAWAVAL-------G 108
+ V+ +L + IW+ Q + ++ M + W L ++ + G
Sbjct: 283 SIHNVIIHTLPILIFWEIWKRRCACKYGDQKKMWYRTMENHVWWNLKMSLRMTFPSFEIG 342
Query: 109 SGWVRVHESPHAGRELPS----RWKRPATRAVKVNLDARVHDGSMAGLVLVARDENEEVL 164
+ W + + R P W P VK+N D G+ AGL + RD ++
Sbjct: 343 NSWRDLLNKVESLRPYPKWKIVHWNTPNINCVKINTDGSFSSGN-AGLGWIVRDHTRRMI 401
Query: 165 EATSSYPWPILSPLLAEALSLRWSM 189
A S P S LAEAL+ R+ +
Sbjct: 402 MA-FSIPSSCSSNNLAEALAARFGI 425
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.322 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,755,889
Number of Sequences: 2790947
Number of extensions: 11397348
Number of successful extensions: 24828
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 24778
Number of HSP's gapped (non-prelim): 72
length of query: 189
length of database: 848,049,833
effective HSP length: 120
effective length of query: 69
effective length of database: 513,136,193
effective search space: 35406397317
effective search space used: 35406397317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0011b.6