BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0010.3
(172 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q5Z987 Putative AtRAD3 [Oryza sativa] 125 4e-28
UniRef100_Q9FKS4 DNA repair protein ATR [Arabidopsis thaliana] 124 8e-28
UniRef100_UPI00003C1372 UPI00003C1372 UniRef100 entry 37 0.16
UniRef100_Q97YF0 Hypothetical protein [Sulfolobus solfataricus] 37 0.27
UniRef100_Q6P1F8 Fas-associated factor 1 [Mus musculus] 36 0.47
UniRef100_Q5VTA1 Fas (TNFRSF6) associated factor 1 [Homo sapiens] 36 0.47
UniRef100_Q924K2 FAS-associated factor 1 [Rattus norvegicus] 36 0.47
UniRef100_P54731 FAS-associated factor 1 [Mus musculus] 36 0.47
UniRef100_Q9UNN5-2 Splice isoform Short of Q9UNN5 [Homo sapiens] 36 0.47
UniRef100_Q9UNN5 FAS-associated factor 1 [Homo sapiens] 36 0.47
UniRef100_UPI00002DAC47 UPI00002DAC47 UniRef100 entry 35 1.0
UniRef100_UPI0000270BCF UPI0000270BCF UniRef100 entry 35 1.0
UniRef100_Q7ZUK8 Fas associated factor 1 [Brachydanio rerio] 35 1.0
UniRef100_Q8JGN2 Fas-associated factor 1 [Brachydanio rerio] 35 1.0
UniRef100_UPI000031FB51 UPI000031FB51 UniRef100 entry 34 1.4
UniRef100_UPI00003AEB3E UPI00003AEB3E UniRef100 entry 34 1.8
UniRef100_UPI00002E05F1 UPI00002E05F1 UniRef100 entry 33 3.0
UniRef100_UPI00002C2C05 UPI00002C2C05 UniRef100 entry 33 3.0
UniRef100_UPI00002B6A51 UPI00002B6A51 UniRef100 entry 33 3.0
UniRef100_UPI0000282542 UPI0000282542 UniRef100 entry 33 3.0
>UniRef100_Q5Z987 Putative AtRAD3 [Oryza sativa]
Length = 2710
Score = 125 bits (314), Expect = 4e-28
Identities = 65/134 (48%), Positives = 91/134 (67%)
Query: 39 ANLSSLPERIAASSSTLTPNNPSGEALEVRFCTVLPNLLHAYVVPSSSRNNDREVIAVVK 98
+++ L E IAASS+T + + P+ EV+ VLPNLL YVVPSS + RE AV+K
Sbjct: 6 SHIQELRELIAASSTTTSTSAPASVHFEVKLREVLPNLLRDYVVPSSPTADGREATAVLK 65
Query: 99 LISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLSLFRSGAR 158
L+S+TA FPGVFF G+ + V+ V+ +LP +A+P FRSRH + F+ + SLLSL R+G R
Sbjct: 66 LLSYTAGKFPGVFFHGRAADVIRVIGRVLPFFAEPNFRSRHEIIFDTVWSLLSLLRTGDR 125
Query: 159 DASTHFFLDPMLLI 172
+A FFLD M+ +
Sbjct: 126 EAYRQFFLDVMVAV 139
>UniRef100_Q9FKS4 DNA repair protein ATR [Arabidopsis thaliana]
Length = 2702
Score = 124 bits (312), Expect = 8e-28
Identities = 76/141 (53%), Positives = 94/141 (65%), Gaps = 10/141 (7%)
Query: 40 NLSSLP----ERIAASSSTLTPN--NPSGE--ALEVRFCTVLPNLLHAYVVPSSSRNNDR 91
NLSSL ER+AAS+ST N + SG+ ALE+RF V+PNLL+ YVVPS N R
Sbjct: 7 NLSSLVHELRERVAASASTPANNLRHSSGDEDALEIRFRAVIPNLLNTYVVPSLG--NGR 64
Query: 92 EVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLS 151
EV AV+KL+ HTARN PGVF+ G PSA+LPV+A I+P +A+P F H V E +GSLL
Sbjct: 65 EVTAVLKLVGHTARNIPGVFYHGTPSAILPVIARIIPFFAEPEFVPGHGVLLETVGSLLM 124
Query: 152 LFRSGARDASTHFFLDPMLLI 172
L RS +R A FF D + I
Sbjct: 125 LLRSNSRKAYRIFFHDALQAI 145
>UniRef100_UPI00003C1372 UPI00003C1372 UniRef100 entry
Length = 1214
Score = 37.4 bits (85), Expect = 0.16
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 14 PHSTLVRVREEEEEEEEAYFVSMAKANLSSL--PERIAASSSTLTPNNPSGEALEVRFCT 71
PH + + + +E+ E+EE S + +++ P R + +TP+NP+G L + +
Sbjct: 118 PHQSSLSMYQEDAEDEERAASSDLPSTFATISEPNRRCSDGDKVTPSNPTGFDLPL---S 174
Query: 72 VLPNLLHAYVVPSSSRNNDREVIAVVKLISHTARNFPG 109
+ V PSSSR + A L S + RN G
Sbjct: 175 TSSDRSRPVVAPSSSRTSTASSAAAFSLRSLSNRNSTG 212
>UniRef100_Q97YF0 Hypothetical protein [Sulfolobus solfataricus]
Length = 613
Score = 36.6 bits (83), Expect = 0.27
Identities = 29/122 (23%), Positives = 53/122 (42%), Gaps = 12/122 (9%)
Query: 3 VKEKELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSG 62
V+ E + T P+S+++ E A ++ + + +A SSSTLTP
Sbjct: 240 VQTLEFLNTTSPYSSILIDSINNTIEAMANRFTIDNQTIDNSIIDLAYSSSTLTPGEQEF 299
Query: 63 EALEVRF------------CTVLPNLLHAYVVPSSSRNNDREVIAVVKLISHTARNFPGV 110
A V F ++LP L++ PS S + +++V +++ +A PGV
Sbjct: 300 YAYIVSFGGNITTKIESEIYSILPKLVNLIQYPSISNQSPTTIVSVFNVLNRSATKVPGV 359
Query: 111 FF 112
+
Sbjct: 360 VY 361
>UniRef100_Q6P1F8 Fas-associated factor 1 [Mus musculus]
Length = 649
Score = 35.8 bits (81), Expect = 0.47
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 589
>UniRef100_Q5VTA1 Fas (TNFRSF6) associated factor 1 [Homo sapiens]
Length = 464
Score = 35.8 bits (81), Expect = 0.47
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 345 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 396
>UniRef100_Q924K2 FAS-associated factor 1 [Rattus norvegicus]
Length = 649
Score = 35.8 bits (81), Expect = 0.47
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPEEENAEPVSKLRIRTPSGEFLERRF 589
>UniRef100_P54731 FAS-associated factor 1 [Mus musculus]
Length = 649
Score = 35.8 bits (81), Expect = 0.47
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 538 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 589
>UniRef100_Q9UNN5-2 Splice isoform Short of Q9UNN5 [Homo sapiens]
Length = 498
Score = 35.8 bits (81), Expect = 0.47
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 387 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 438
>UniRef100_Q9UNN5 FAS-associated factor 1 [Homo sapiens]
Length = 650
Score = 35.8 bits (81), Expect = 0.47
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ +A E A S L PSGE LE RF
Sbjct: 539 LEQIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRF 590
>UniRef100_UPI00002DAC47 UPI00002DAC47 UniRef100 entry
Length = 692
Score = 34.7 bits (78), Expect = 1.0
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L R+R+E+EEE++A +S+ +A E S L PSGE LE RF
Sbjct: 602 LERMRKEQEEEKKAIRLSLEQALPPEPSENSGKQISKLRIRTPSGEFLERRF 653
>UniRef100_UPI0000270BCF UPI0000270BCF UniRef100 entry
Length = 295
Score = 34.7 bits (78), Expect = 1.0
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAAS---SSTLTPNNPSG 62
K++ITFT PH + E+ E + Y + N S P + S LT NN G
Sbjct: 30 KQIITFTHPHIGNTGINSEDNESDNIYAEGVVIRNYISKPSNYRSEENLDSFLTRNNSIG 89
Query: 63 -EALEVRFCTVL---PNLLHAYVVPSSSRNNDREVIAVVK 98
++ R T++ L A + P NN+ I++ K
Sbjct: 90 IFGIDTRQLTIILREKGSLKACISP-IDENNEESAISLAK 128
>UniRef100_Q7ZUK8 Fas associated factor 1 [Brachydanio rerio]
Length = 673
Score = 34.7 bits (78), Expect = 1.0
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 20 RVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
R+R+E+EEE EA +S+ +A E S L PSGE LE RF
Sbjct: 564 RIRKEQEEEREAIRLSLEQALPPEPKEEGGEPISKLRIRTPSGEFLERRF 613
>UniRef100_Q8JGN2 Fas-associated factor 1 [Brachydanio rerio]
Length = 681
Score = 34.7 bits (78), Expect = 1.0
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 20 RVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
R+R+E+EEE EA +S+ +A E S L PSGE LE RF
Sbjct: 564 RIRKEQEEEREAIRLSLEQALPPEPKEEGGEPISKLRIRTPSGEFLERRF 613
>UniRef100_UPI000031FB51 UPI000031FB51 UniRef100 entry
Length = 271
Score = 34.3 bits (77), Expect = 1.4
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSST---LTPNNPSG 62
K++ITFT PH + E+ E + Y + N S P + LT NN G
Sbjct: 61 KQIITFTHPHIGNTGINSEDNESDNIYAEGVVIRNYISKPSNYRSEEDLDDFLTRNNSIG 120
Query: 63 -EALEVRFCTVL---PNLLHAYVVPSSSRNNDREVIAVVK 98
++ R T++ L A + P +NN+ I++ K
Sbjct: 121 IFGIDTRQITIILREKGSLKACISP-IDKNNEESAISLAK 159
>UniRef100_UPI00003AEB3E UPI00003AEB3E UniRef100 entry
Length = 650
Score = 33.9 bits (76), Expect = 1.8
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 18 LVRVREEEEEEEEAYFVSMAKANLSSLPERIAASSSTLTPNNPSGEALEVRF 69
L ++R+E+EEE EA +S+ ++ E S S L PSGE E RF
Sbjct: 539 LEQIRKEQEEEREAIRLSLEQSLPPEPKEESTESVSKLRIRTPSGEFFERRF 590
>UniRef100_UPI00002E05F1 UPI00002E05F1 UniRef100 entry
Length = 126
Score = 33.1 bits (74), Expect = 3.0
Identities = 12/27 (44%), Positives = 20/27 (73%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAY 32
K++ITFTFPH +V +E++E ++ Y
Sbjct: 60 KQIITFTFPHIGIVGTNQEDQESKKIY 86
>UniRef100_UPI00002C2C05 UPI00002C2C05 UniRef100 entry
Length = 243
Score = 33.1 bits (74), Expect = 3.0
Identities = 12/27 (44%), Positives = 20/27 (73%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAY 32
K++ITFTFPH +V +E++E ++ Y
Sbjct: 60 KQIITFTFPHVGIVGTNQEDQESKKIY 86
>UniRef100_UPI00002B6A51 UPI00002B6A51 UniRef100 entry
Length = 298
Score = 33.1 bits (74), Expect = 3.0
Identities = 12/27 (44%), Positives = 20/27 (73%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAY 32
K++ITFTFPH +V +E++E ++ Y
Sbjct: 27 KQIITFTFPHVGIVGTNQEDQESKKIY 53
>UniRef100_UPI0000282542 UPI0000282542 UniRef100 entry
Length = 292
Score = 33.1 bits (74), Expect = 3.0
Identities = 12/27 (44%), Positives = 20/27 (73%)
Query: 6 KELITFTFPHSTLVRVREEEEEEEEAY 32
K++ITFTFPH +V +E++E ++ Y
Sbjct: 20 KQIITFTFPHVGIVGTNQEDQESKKIY 46
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.321 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,760,513
Number of Sequences: 2790947
Number of extensions: 11089257
Number of successful extensions: 35645
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 35613
Number of HSP's gapped (non-prelim): 47
length of query: 172
length of database: 848,049,833
effective HSP length: 118
effective length of query: 54
effective length of database: 518,718,087
effective search space: 28010776698
effective search space used: 28010776698
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 70 (31.6 bits)
Lotus: description of TM0010.3