BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0008.13
(259 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_Q9FFK7 Signal recognition particle receptor beta subun... 385 e-106
UniRef100_Q9ZV42 Putative signal recognition particle receptor b... 361 1e-98
UniRef100_Q5XVE5 Hypothetical protein [Arabidopsis thaliana] 359 4e-98
UniRef100_Q6ZK21 Putative signal recognition particle receptor b... 347 1e-94
UniRef100_Q69XY7 Signal recognition particle receptor beta subun... 237 3e-61
UniRef100_Q7SYX3 Apmcf1-prov protein [Xenopus laevis] 114 2e-24
UniRef100_Q9VSN9 CG33162-PA [Drosophila melanogaster] 111 2e-23
UniRef100_Q6IDG2 RE55992p [Drosophila melanogaster] 111 2e-23
UniRef100_P47758 Signal recognition particle receptor beta subun... 109 8e-23
UniRef100_Q6DGW3 Zgc:92746 [Brachydanio rerio] 108 1e-22
UniRef100_UPI0000430C3F UPI0000430C3F UniRef100 entry 108 1e-22
UniRef100_Q5ZJA5 Hypothetical protein [Gallus gallus] 108 2e-22
UniRef100_Q7TP24 Ba1-667 [Rattus norvegicus] 107 2e-22
UniRef100_Q7TMC7 Ab2-417 [Rattus norvegicus] 107 2e-22
UniRef100_Q7Q513 ENSANGP00000020947 [Anopheles gambiae str. PEST] 107 2e-22
UniRef100_Q6P595 Signal recognition particle receptor, beta subu... 107 2e-22
UniRef100_Q9Y5M8 Signal recognition particle receptor beta subun... 107 2e-22
UniRef100_UPI0000430C3E UPI0000430C3E UniRef100 entry 107 3e-22
UniRef100_Q6P860 Hypothetical protein MGC75930 [Xenopus tropicalis] 105 9e-22
UniRef100_Q8I4W4 Hypothetical protein [Plasmodium falciparum] 105 1e-21
>UniRef100_Q9FFK7 Signal recognition particle receptor beta subunit-like protein
[Arabidopsis thaliana]
Length = 260
Score = 385 bits (990), Expect = e-106
Identities = 186/260 (71%), Positives = 225/260 (86%), Gaps = 1/260 (0%)
Query: 1 MQELEHWKEELSRLWLTASDYLRQVPPEQLYIAAAIAVFTTLLL-LSLRLFKRAKTNTVV 59
M+ LE K + +YL+++PP QLY A + +FTT+LL LS+RL +R K+NTV+
Sbjct: 1 MENLEDLKILAEQWSHQGIEYLQKIPPNQLYAAIGVLLFTTILLFLSIRLVRRTKSNTVL 60
Query: 60 LTGLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHS 119
L+GLTGSGKTVLFYQLRDGS+HQGTVTSMEPNEGTF+LHSE TKKGK+KPVH+VDVPGHS
Sbjct: 61 LSGLTGSGKTVLFYQLRDGSSHQGTVTSMEPNEGTFVLHSENTKKGKIKPVHLVDVPGHS 120
Query: 120 RLRPKLDEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTD 179
RLRPKL+E+LPQAA +VFVVDA++FLPNCRAASEYLY+ILT +VVKKKIP+L+ CNKTD
Sbjct: 121 RLRPKLEEFLPQAAAIVFVVDALEFLPNCRAASEYLYEILTNANVVKKKIPVLLCCNKTD 180
Query: 180 KVTAHTKEFIRRQLEKEIDKLRASRSAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADA 239
K+TAHTKEFIR+Q+EKEI+KLRASRSAVS AD+ N+FT+G+ GE FSFT C NKVT A+A
Sbjct: 181 KLTAHTKEFIRKQMEKEIEKLRASRSAVSTADIANDFTIGIEGEVFSFTHCSNKVTVAEA 240
Query: 240 SGLTGEISQLEEFIREYVKP 259
SGLTGE Q+E+FIREY+KP
Sbjct: 241 SGLTGETIQIEDFIREYIKP 260
>UniRef100_Q9ZV42 Putative signal recognition particle receptor beta subunit
[Arabidopsis thaliana]
Length = 260
Score = 361 bits (926), Expect = 1e-98
Identities = 176/260 (67%), Positives = 220/260 (83%), Gaps = 4/260 (1%)
Query: 1 MQELEHWKEELSRLWLTASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFKRAKTNTVVL 60
+++L+ E+ S+ L ++++++PP QLY A + + T+ LLS+RLF+R K+NTV+L
Sbjct: 4 LEDLKIVAEQWSKQGL---EFVQKIPPPQLYTAIGVLLLATIWLLSIRLFRRTKSNTVLL 60
Query: 61 TGLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSET-TKKGKVKPVHIVDVPGHS 119
+GL+GSGKTVLFYQLRDGS+HQG VTSMEPNEGTF+LH+E TKKGKVKPVH++DVPGHS
Sbjct: 61 SGLSGSGKTVLFYQLRDGSSHQGAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHS 120
Query: 120 RLRPKLDEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTD 179
RL KL+EYLP+AA VVFVVDA++FLPN RAASEYLYDILT SV+K K P+L+ CNKTD
Sbjct: 121 RLISKLEEYLPRAAAVVFVVDALEFLPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTD 180
Query: 180 KVTAHTKEFIRRQLEKEIDKLRASRSAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADA 239
KVTAHTKEFIR+Q+EKEIDKLR SRSA+S AD+ N+FTLG+ GE FSF+ C NKVT A+A
Sbjct: 181 KVTAHTKEFIRKQMEKEIDKLRVSRSAISTADIANDFTLGIEGEVFSFSHCHNKVTVAEA 240
Query: 240 SGLTGEISQLEEFIREYVKP 259
SGLTGE Q++EFIRE+VKP
Sbjct: 241 SGLTGETDQVQEFIREHVKP 260
>UniRef100_Q5XVE5 Hypothetical protein [Arabidopsis thaliana]
Length = 260
Score = 359 bits (921), Expect = 4e-98
Identities = 175/260 (67%), Positives = 220/260 (84%), Gaps = 4/260 (1%)
Query: 1 MQELEHWKEELSRLWLTASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFKRAKTNTVVL 60
+++L+ E+ S+ L ++++++PP QLY A + + T+ LLS+RLF+R K++TV+L
Sbjct: 4 LEDLKIVAEQWSKQGL---EFVQKIPPPQLYTAIGVLLLATIWLLSIRLFRRTKSDTVLL 60
Query: 61 TGLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSET-TKKGKVKPVHIVDVPGHS 119
+GL+GSGKTVLFYQLRDGS+HQG VTSMEPNEGTF+LH+E TKKGKVKPVH++DVPGHS
Sbjct: 61 SGLSGSGKTVLFYQLRDGSSHQGAVTSMEPNEGTFVLHNENNTKKGKVKPVHLIDVPGHS 120
Query: 120 RLRPKLDEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTD 179
RL KL+EYLP+AA VVFVVDA++FLPN RAASEYLYDILT SV+K K P+L+ CNKTD
Sbjct: 121 RLISKLEEYLPRAAAVVFVVDALEFLPNIRAASEYLYDILTNASVIKNKTPVLLCCNKTD 180
Query: 180 KVTAHTKEFIRRQLEKEIDKLRASRSAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADA 239
KVTAHTKEFIR+Q+EKEIDKLR SRSA+S AD+ N+FTLG+ GE FSF+ C NKVT A+A
Sbjct: 181 KVTAHTKEFIRKQMEKEIDKLRVSRSAISTADIANDFTLGIEGEVFSFSHCHNKVTVAEA 240
Query: 240 SGLTGEISQLEEFIREYVKP 259
SGLTGE Q++EFIRE+VKP
Sbjct: 241 SGLTGETDQVQEFIREHVKP 260
>UniRef100_Q6ZK21 Putative signal recognition particle receptor beta subunit [Oryza
sativa]
Length = 256
Score = 347 bits (891), Expect = 1e-94
Identities = 165/256 (64%), Positives = 212/256 (82%), Gaps = 2/256 (0%)
Query: 4 LEHWKEELSRLWL-TASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFKRAKTNTVVLTG 62
++ W + + +W+ A ++RQ PPEQ+Y+A A+ T LLL+++ K +K NT+VL+G
Sbjct: 1 MDEWVRQ-AEVWVGQAERWIRQQPPEQVYVAVAVVAVTVLLLVAVSCLKSSKANTIVLSG 59
Query: 63 LTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLR 122
L+GSGKT+LFYQLRDGSTHQGTVTSME N TF+LHSE ++GKVKPVH+VDVPGH+RL+
Sbjct: 60 LSGSGKTILFYQLRDGSTHQGTVTSMEQNNDTFVLHSELERRGKVKPVHVVDVPGHARLK 119
Query: 123 PKLDEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVT 182
PKLDE LPQAAG+V+VVDA DFL AA+EYLYDILTK +VVKK++P+LI CNKTDKVT
Sbjct: 120 PKLDEVLPQAAGIVYVVDAQDFLSTMHAAAEYLYDILTKATVVKKRVPVLIFCNKTDKVT 179
Query: 183 AHTKEFIRRQLEKEIDKLRASRSAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADASGL 242
AH+KEFI++QLEKE++KLR SR+A+S AD+T+E LG PGEAF+F+QC NKVT + +GL
Sbjct: 180 AHSKEFIKKQLEKELNKLRESRNAISSADITDEVKLGNPGEAFNFSQCQNKVTVTEGAGL 239
Query: 243 TGEISQLEEFIREYVK 258
TG +S +EEFIREYVK
Sbjct: 240 TGNVSAVEEFIREYVK 255
>UniRef100_Q69XY7 Signal recognition particle receptor beta subunit-like [Oryza
sativa]
Length = 172
Score = 237 bits (604), Expect = 3e-61
Identities = 113/171 (66%), Positives = 138/171 (80%)
Query: 88 MEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPKLDEYLPQAAGVVFVVDAVDFLPN 147
ME N TF+LHSE +K K+KPVH+VDVPGH+ L+PKLDE LPQAAG+VF VDA DFL
Sbjct: 1 MEQNNDTFVLHSELERKSKIKPVHVVDVPGHAGLKPKLDEVLPQAAGIVFAVDAQDFLST 60
Query: 148 CRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRSAV 207
+ +EYLYDILTK +VVKK+I +LI CNKTDKVTAH+KEFI++QLEKEI+KLR SR +
Sbjct: 61 MQVVAEYLYDILTKATVVKKRIHVLIFCNKTDKVTAHSKEFIKKQLEKEINKLRESRKDI 120
Query: 208 SDADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTGEISQLEEFIREYVK 258
S AD T+E LG PGE F F+QC N+VT A+ +GLTG +S +E+FIREYVK
Sbjct: 121 SSADTTDEVKLGNPGETFYFSQCQNRVTVAEGAGLTGNVSAVEQFIREYVK 171
>UniRef100_Q7SYX3 Apmcf1-prov protein [Xenopus laevis]
Length = 264
Score = 114 bits (285), Expect = 2e-24
Identities = 79/235 (33%), Positives = 125/235 (52%), Gaps = 15/235 (6%)
Query: 15 WLTASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFK-----RAKTNTVVLTGLTGSGKT 69
WL ++++Q Q ++ + ++LLS L+K R V+L GL SGKT
Sbjct: 12 WLPDLEFIKQELQRQDPTLLSVGIALIVVLLSFVLWKILRGSRISRRAVLLVGLCDSGKT 71
Query: 70 VLFYQLRDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEY 128
+LF +L G T++ T TS+ N + + S+ K + +VD+PGH LR + L++Y
Sbjct: 72 LLFNRLLTG-TYKKTQTSITANSAAYKVKSD-----KGTSLTLVDLPGHESLRHQFLEQY 125
Query: 129 LPQAAGVVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEF 188
A ++FVVD+ F + +E LY +LT +V+K P+LI CNK D A + +
Sbjct: 126 KASARALLFVVDSSAFQREVKEVAELLYQLLTDVAVLKNAPPILIACNKQDISMAKSAKL 185
Query: 189 IRRQLEKEIDKLRASRSAVS---DADVTNEFTLGVPGEAFSFTQCCNKVTTADAS 240
+++QLEKE++ LR +RSA + + LG G+ F FTQ KV + S
Sbjct: 186 VQQQLEKELNTLRVTRSAAPTTLEGSNSGVAQLGKKGKDFDFTQLPMKVKFLECS 240
>UniRef100_Q9VSN9 CG33162-PA [Drosophila melanogaster]
Length = 244
Score = 111 bits (278), Expect = 2e-23
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 16/227 (7%)
Query: 32 IAAAIAVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGSTHQGTVTSMEPN 91
I A + F + + + + A +LTGL+ SGK+ +F QL G T TS++ N
Sbjct: 25 IVALLLGFIAVAIFVILRRRSAGRKDFLLTGLSESGKSAIFMQLIHGK-FPATFTSIKEN 83
Query: 92 EGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAGVVFVVDAVDFLPNCRA 150
G + S + + +VD+PGH R+R K L+ Y +A G+VFVVD+V + R
Sbjct: 84 VGDYRTGSASAR--------LVDIPGHYRVRDKCLELYKHRAKGIVFVVDSVTAHKDIRD 135
Query: 151 ASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRS----A 206
+++LY IL+ + + +L+LCNK D+ TA + + I+ LE E+ +R +RS +
Sbjct: 136 VADFLYTILSDSAT--QPCSVLVLCNKQDQTTAKSAQVIKSLLESELHTVRDTRSRKLQS 193
Query: 207 VSDADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTGEISQLEEFI 253
V D D + TLG PG F F+ + A+AS E+ L +++
Sbjct: 194 VGDEDGSKSITLGKPGRDFEFSHIAQNIQFAEASAKDTELDPLTDWL 240
>UniRef100_Q6IDG2 RE55992p [Drosophila melanogaster]
Length = 268
Score = 111 bits (278), Expect = 2e-23
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 16/227 (7%)
Query: 32 IAAAIAVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGSTHQGTVTSMEPN 91
I A + F + + + + A +LTGL+ SGK+ +F QL G T TS++ N
Sbjct: 49 IVALLLGFIAVAIFVILRRRSAGRKDFLLTGLSESGKSAIFMQLIHGK-FPATFTSIKEN 107
Query: 92 EGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAGVVFVVDAVDFLPNCRA 150
G + S + + +VD+PGH R+R K L+ Y +A G+VFVVD+V + R
Sbjct: 108 VGDYRTGSASAR--------LVDIPGHYRVRDKCLELYKHRAKGIVFVVDSVTAHKDIRD 159
Query: 151 ASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRS----A 206
+++LY IL+ + + +L+LCNK D+ TA + + I+ LE E+ +R +RS +
Sbjct: 160 VADFLYTILSDSAT--QPCSVLVLCNKQDQTTAKSAQVIKSLLESELHTVRDTRSRKLQS 217
Query: 207 VSDADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTGEISQLEEFI 253
V D D + TLG PG F F+ + A+AS E+ L +++
Sbjct: 218 VGDEDGSKSITLGKPGRDFEFSHIAQNIQFAEASAKDTELDPLTDWL 264
>UniRef100_P47758 Signal recognition particle receptor beta subunit [Mus musculus]
Length = 269
Score = 109 bits (272), Expect = 8e-23
Identities = 79/244 (32%), Positives = 125/244 (50%), Gaps = 18/244 (7%)
Query: 22 LRQVPPEQLYIAAAI-AVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGST 80
L+Q P L +A A+ AV TL+ +++ V+ GL SGKT+LF +L G
Sbjct: 28 LQQRDPTLLSVAVALLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 86
Query: 81 HQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPKL-DEYLPQAAGVVFVV 139
++ T TS+ + + +++ + + ++D+PGH LR +L D + A VVFVV
Sbjct: 87 YRDTQTSITDSSAIYKVNNN-----RGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 141
Query: 140 DAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDK 199
D+ F + +E+LY +L +K LLI CNK D A + + I++QLEKE++
Sbjct: 142 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNT 201
Query: 200 LRASRSAVS---DADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTG-------EISQL 249
LR +RSA D+ T LG G+ F F+Q KV + S G +I L
Sbjct: 202 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDL 261
Query: 250 EEFI 253
E+++
Sbjct: 262 EKWL 265
>UniRef100_Q6DGW3 Zgc:92746 [Brachydanio rerio]
Length = 266
Score = 108 bits (271), Expect = 1e-22
Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 15/223 (6%)
Query: 21 YLRQVPPEQLYIAAAIAVFTTLLLLSLRLF-----KRAKTNTVVLTGLTGSGKTVLFYQL 75
+L+++ E I V L++L++ F N V+L GL SGKT+LF +L
Sbjct: 21 FLKEIQNEDAVFLVGIFVALALVILTIVFFGNFWGSSKVRNAVLLLGLCDSGKTLLFTRL 80
Query: 76 RDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPKL-DEYLPQAAG 134
G + T TS+ + T+ SE ++DVPGH LR ++ ++Y A
Sbjct: 81 LLGKFVR-TQTSITESSATYKSKSERGNSWT-----LIDVPGHESLRTQIVEKYKDVARA 134
Query: 135 VVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLE 194
+VFVVD+ F + R +E+LY ILT + K L++ CNK D A + + I++QLE
Sbjct: 135 IVFVVDSSIFQKDVRDVAEFLYSILTDSILAKNAPTLVVACNKQDITMAKSAKLIQQQLE 194
Query: 195 KEIDKLRASRSAV---SDADVTNEFTLGVPGEAFSFTQCCNKV 234
KE++ LR +RSA D V LG G+ F F+Q N+V
Sbjct: 195 KELNTLRLTRSAALSSQDGAVGGSVYLGKKGKDFEFSQLANRV 237
>UniRef100_UPI0000430C3F UPI0000430C3F UniRef100 entry
Length = 201
Score = 108 bits (270), Expect = 1e-22
Identities = 74/206 (35%), Positives = 123/206 (58%), Gaps = 16/206 (7%)
Query: 39 FTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILH 98
F ++L ++ +R+ N+++LTGL+ +GKT+++ L S T TS++ N G I++
Sbjct: 1 FFCIVLFAIWHKRRSIGNSILLTGLSDAGKTLIYAHLLC-SKFVKTHTSVKENIGDIIIN 59
Query: 99 SETTKKGKVKPVHIVDVPGHSRLRPKL-DEYLPQAAGVVFVVDAVDFLPNCRAASEYLYD 157
+ + K IVD+PGH RLR K D++ A G+V+V+D+V F + R +EYLY+
Sbjct: 60 NRSLK--------IVDIPGHERLRYKFFDQFKLSAKGLVYVIDSVTFQKDIRDVAEYLYN 111
Query: 158 ILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRSA---VSDADVTN 214
+L+ S+++KK P+LILCNK D+ A I+ LEKE++ LR ++++ +DA TN
Sbjct: 112 LLS-DSIIQKK-PVLILCNKQDQTMAKGSVVIKTLLEKEMNLLRMTKTSQLEATDASATN 169
Query: 215 EFTLGVPGEAFSFTQCCNKVTTADAS 240
F LG + F F+ + A+ S
Sbjct: 170 IF-LGKQEKDFDFSHLDINIEFAECS 194
>UniRef100_Q5ZJA5 Hypothetical protein [Gallus gallus]
Length = 258
Score = 108 bits (269), Expect = 2e-22
Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 26 PPEQLYIAAAIAVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGSTHQGTV 85
P + A + V T LL L R+ V+L GL +GKT+LF +L G ++ T
Sbjct: 21 PASLSVLLALLVVALTFLLWRLAQGARSTRRAVLLLGLCDAGKTLLFARLLTGR-YRDTQ 79
Query: 86 TSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAGVVFVVDAVDF 144
TS+ + + + ++ K V ++D+PGH LR + L+ + A +VFVVD+V F
Sbjct: 80 TSITDSSAVYRVSND-----KGTNVTLIDLPGHESLRLQFLERFKAAARAIVFVVDSVAF 134
Query: 145 LPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASR 204
+ +E+LY +L +V+K LLI CNK D A + + I++QLEKE++ LR +R
Sbjct: 135 QREVKDVAEFLYQVLVDSTVLKNAPALLIACNKQDVTMAKSAKLIQQQLEKELNTLRVTR 194
Query: 205 SAVS---DADVT-NEFTLGVPGEAFSFTQCCNKVTTADAS--GLTGE 245
SA DA T LG G+ F F+Q KV + S G GE
Sbjct: 195 SAAPTSLDASATGGPAQLGKKGKDFDFSQLPMKVEFVECSARGSKGE 241
>UniRef100_Q7TP24 Ba1-667 [Rattus norvegicus]
Length = 980
Score = 107 bits (268), Expect = 2e-22
Identities = 74/228 (32%), Positives = 117/228 (50%), Gaps = 11/228 (4%)
Query: 22 LRQVPPEQLYIAAAI-AVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGST 80
L+Q P L +A A+ AV TL+ +++ V+ GL SGKT+LF +L G
Sbjct: 739 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 797
Query: 81 HQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAGVVFVV 139
++ T TS+ + + +++ + + ++D+PGH LR + LD + A VVFVV
Sbjct: 798 YRDTQTSITDSSAIYKVNNN-----RGNSLTLIDLPGHESLRLQFLDRFKSSARAVVFVV 852
Query: 140 DAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDK 199
D+ F + +E+LY +L +K L+ CNK D A + + I++QLEKE++
Sbjct: 853 DSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNT 912
Query: 200 LRASRSAVS---DADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTG 244
LR +RSA D+ T LG G+ F F+Q KV + S G
Sbjct: 913 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 960
>UniRef100_Q7TMC7 Ab2-417 [Rattus norvegicus]
Length = 979
Score = 107 bits (268), Expect = 2e-22
Identities = 74/228 (32%), Positives = 117/228 (50%), Gaps = 11/228 (4%)
Query: 22 LRQVPPEQLYIAAAI-AVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGST 80
L+Q P L +A A+ AV TL+ +++ V+ GL SGKT+LF +L G
Sbjct: 738 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ- 796
Query: 81 HQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAGVVFVV 139
++ T TS+ + + +++ + + ++D+PGH LR + LD + A VVFVV
Sbjct: 797 YRDTQTSITDSSAIYKVNNN-----RGNSLTLIDLPGHESLRLQFLDRFKSSARAVVFVV 851
Query: 140 DAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDK 199
D+ F + +E+LY +L +K L+ CNK D A + + I++QLEKE++
Sbjct: 852 DSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNT 911
Query: 200 LRASRSAVS---DADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTG 244
LR +RSA D+ T LG G+ F F+Q KV + S G
Sbjct: 912 LRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGG 959
>UniRef100_Q7Q513 ENSANGP00000020947 [Anopheles gambiae str. PEST]
Length = 244
Score = 107 bits (268), Expect = 2e-22
Identities = 81/243 (33%), Positives = 132/243 (53%), Gaps = 20/243 (8%)
Query: 18 ASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFKRAKT--NTVVLTGLTGSGKTVLFYQL 75
AS L ++ + IA A+ + T ++L L+KR KT + V+ TGL SGKT LF L
Sbjct: 12 ASIKLGELNYTPVLIALAVVLLTIVVLF---LWKRKKTVRSAVLFTGLCDSGKTYLFAHL 68
Query: 76 RDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPKL-DEYLPQAAG 134
G + T TS++ N G+F T++G+V + +VDVPG+ RLR K DEY A
Sbjct: 69 CLGGARE-TFTSIKENVGSF-----KTERGRV--LKMVDVPGNERLRGKFFDEYKNIAKA 120
Query: 135 VVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLE 194
+V+++D+V + R +++LY IL + K+P+++LCNK D+ A T+ I+ LE
Sbjct: 121 IVYMIDSVTVQKDIRDVADFLYTILVDKAT--SKVPVVVLCNKQDETLAKTETAIKSMLE 178
Query: 195 KEIDKLRASR----SAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTGEISQLE 250
KEI+ +R +R +V ++ ++ F F F Q +V S + + + L
Sbjct: 179 KEINIVRQTRRSQLQSVDNSSSSDTFLGKSASVDFEFEQLGQRVRFVPCSAMEEQFAGLT 238
Query: 251 EFI 253
+F+
Sbjct: 239 KFL 241
>UniRef100_Q6P595 Signal recognition particle receptor, beta subunit [Homo sapiens]
Length = 271
Score = 107 bits (268), Expect = 2e-22
Identities = 79/249 (31%), Positives = 126/249 (49%), Gaps = 18/249 (7%)
Query: 17 TASDYLRQVPPEQLYIAAAI-AVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQL 75
T L+Q P L + A+ AV TL+ L +R+ V+L GL SGKT+LF +L
Sbjct: 25 TLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRL 84
Query: 76 RDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAG 134
G ++ T TS+ + + +++ + + ++D+PGH LR + L+ + A
Sbjct: 85 LTG-LYRDTQTSITDSCAVYRVNNN-----RGNSLTLIDLPGHESLRLQFLERFKSSARA 138
Query: 135 VVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLE 194
+VFVVD+ F + +E+LY +L +K LI CNK D A + + I++QLE
Sbjct: 139 IVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLE 198
Query: 195 KEIDKLRASRSAVS---DADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTG------- 244
KE++ LR +RSA D+ T LG G+ F F+Q KV + S G
Sbjct: 199 KELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSA 258
Query: 245 EISQLEEFI 253
+I LE+++
Sbjct: 259 DIQDLEKWL 267
>UniRef100_Q9Y5M8 Signal recognition particle receptor beta subunit [Homo sapiens]
Length = 271
Score = 107 bits (268), Expect = 2e-22
Identities = 79/249 (31%), Positives = 126/249 (49%), Gaps = 18/249 (7%)
Query: 17 TASDYLRQVPPEQLYIAAAI-AVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQL 75
T L+Q P L + A+ AV TL+ L +R+ V+L GL SGKT+LF +L
Sbjct: 25 TLRQELQQTDPTLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRL 84
Query: 76 RDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAG 134
G ++ T TS+ + + +++ + + ++D+PGH LR + L+ + A
Sbjct: 85 LTG-LYRDTQTSITDSCAVYRVNNN-----RGNSLTLIDLPGHESLRLQFLERFKSSARA 138
Query: 135 VVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLE 194
+VFVVD+ F + +E+LY +L +K LI CNK D A + + I++QLE
Sbjct: 139 IVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLE 198
Query: 195 KEIDKLRASRSAVS---DADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTG------- 244
KE++ LR +RSA D+ T LG G+ F F+Q KV + S G
Sbjct: 199 KELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDVGSA 258
Query: 245 EISQLEEFI 253
+I LE+++
Sbjct: 259 DIQDLEKWL 267
>UniRef100_UPI0000430C3E UPI0000430C3E UniRef100 entry
Length = 209
Score = 107 bits (267), Expect = 3e-22
Identities = 73/203 (35%), Positives = 122/203 (59%), Gaps = 16/203 (7%)
Query: 42 LLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSET 101
++L ++ +R+ N+++LTGL+ +GKT+++ L S T TS++ N G I+++ +
Sbjct: 1 IVLFAIWHKRRSIGNSILLTGLSDAGKTLIYAHLLC-SKFVKTHTSVKENIGDIIINNRS 59
Query: 102 TKKGKVKPVHIVDVPGHSRLRPKL-DEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILT 160
K IVD+PGH RLR K D++ A G+V+V+D+V F + R +EYLY++L+
Sbjct: 60 LK--------IVDIPGHERLRYKFFDQFKLSAKGLVYVIDSVTFQKDIRDVAEYLYNLLS 111
Query: 161 KGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRSA---VSDADVTNEFT 217
S+++KK P+LILCNK D+ A I+ LEKE++ LR ++++ +DA TN F
Sbjct: 112 -DSIIQKK-PVLILCNKQDQTMAKGSVVIKTLLEKEMNLLRMTKTSQLEATDASATNIF- 168
Query: 218 LGVPGEAFSFTQCCNKVTTADAS 240
LG + F F+ + A+ S
Sbjct: 169 LGKQEKDFDFSHLDINIEFAECS 191
>UniRef100_Q6P860 Hypothetical protein MGC75930 [Xenopus tropicalis]
Length = 249
Score = 105 bits (263), Expect = 9e-22
Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 17/235 (7%)
Query: 34 AAIAVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEG 93
A I V + +L + R V+L G+ SGKT+LF +L G T++ T TS+ N
Sbjct: 21 ALIVVVLSFVLWKILRGSRTSRRAVLLIGVCDSGKTLLFNRLLTG-TYKKTQTSITANCA 79
Query: 94 TFILHSETTKKGKVKPVHIVDVPGHSRLRPK-LDEYLPQAAGVVFVVDAVDFLPNCRAAS 152
+ K K + +VD+PGH LR + L++Y A ++FVVD+ F + +
Sbjct: 80 AY-----KVKNDKGSSLTLVDLPGHESLRLQFLEQYKASARALLFVVDSSAFQREVKEVA 134
Query: 153 EYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRSA---VSD 209
E Y +LT +++K P+LI CNK D A + + I++QLEKE++ LR +RSA + +
Sbjct: 135 ELFYQLLTDVAILKNVPPILIACNKQDISMAKSAKLIQQQLEKELNTLRVTRSAAPSILE 194
Query: 210 ADVTNEFTLGVPGEAFSFTQCCNKV-----TTADASGLTGE--ISQLEEFIREYV 257
+ + LG G+ F FTQ KV +T D+ G+ IS +E ++ + V
Sbjct: 195 SGNSGVTQLGKKGKDFDFTQLPMKVKFLECSTRDSKEEDGDANISNVEGWLAKLV 249
>UniRef100_Q8I4W4 Hypothetical protein [Plasmodium falciparum]
Length = 261
Score = 105 bits (261), Expect = 1e-21
Identities = 71/218 (32%), Positives = 114/218 (51%), Gaps = 9/218 (4%)
Query: 42 LLLLSLRLFKRAKTNTVVLT-GLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSE 100
LL+L FK++K N VVL G SGKT ++L+ + TV SM+ N L +
Sbjct: 49 LLILFNIFFKKSKANNVVLLLGPCDSGKTTFLFKLKTDKLCR-TVPSMKENIAFIFLKN- 106
Query: 101 TTKKGKVKPVHIVDVPGHSRLRPKLDEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILT 160
K K K + VD PGH +L L++Y +V+++D+ D + + +E L+++ T
Sbjct: 107 ---KKKQKCIRFVDFPGHPKLSYSLNKYFNITNVIVYMIDSSD-RQSLKFVAEKLFELFT 162
Query: 161 KGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRSAVSDADVTNEFT--L 218
+VKKKIP +I+CNKTD + K+ I+ LE+EI+ L+ S+ D D +E L
Sbjct: 163 NKVIVKKKIPFIIVCNKTDLCNSRPKQVIKEDLEREIEILKMSKYNNLDDDCIDETECFL 222
Query: 219 GVPGEAFSFTQCCNKVTTADASGLTGEISQLEEFIREY 256
G E F F + + AS + ++ EF+ ++
Sbjct: 223 GANSEFFRFEKAPCHIELCSASVKNNNVDEIIEFVEKH 260
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,114,324
Number of Sequences: 2790947
Number of extensions: 15612476
Number of successful extensions: 59872
Number of sequences better than 10.0: 1459
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 1249
Number of HSP's that attempted gapping in prelim test: 59032
Number of HSP's gapped (non-prelim): 1477
length of query: 259
length of database: 848,049,833
effective HSP length: 125
effective length of query: 134
effective length of database: 499,181,458
effective search space: 66890315372
effective search space used: 66890315372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0008.13