BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0005.12
(526 letters)
Database: uniref100
2,790,947 sequences; 848,049,833 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef100_UPI000043475B UPI000043475B UniRef100 entry 45 0.005
UniRef100_UPI0000193F7E UPI0000193F7E UniRef100 entry 44 0.009
UniRef100_UPI000021B564 UPI000021B564 UniRef100 entry 44 0.012
UniRef100_Q6YVH4 Putative heterogeneous nuclearribonucleoprotein... 44 0.015
UniRef100_Q6YVH3 Putative heterogeneous nuclearribonucleoprotein... 44 0.015
UniRef100_Q9LMQ1 F7H2.17 protein [Arabidopsis thaliana] 44 0.015
UniRef100_Q9TTV2 Vitamin D response element binding protein [Sag... 43 0.020
UniRef100_UPI0000247080 UPI0000247080 UniRef100 entry 42 0.034
UniRef100_UPI000021D8C8 UPI000021D8C8 UniRef100 entry 42 0.034
UniRef100_UPI00001CF2CD UPI00001CF2CD UniRef100 entry 42 0.034
UniRef100_UPI00002327FD Heterogenous nuclear ribonucleoprotein A... 42 0.034
UniRef100_UPI000013D617 UPI000013D617 UniRef100 entry 42 0.034
UniRef100_UPI00003ABA4C UPI00003ABA4C UniRef100 entry 42 0.034
UniRef100_UPI00003ABA4B UPI00003ABA4B UniRef100 entry 42 0.034
UniRef100_UPI00003ABA49 UPI00003ABA49 UniRef100 entry 42 0.034
UniRef100_Q5ZME1 Hypothetical protein [Gallus gallus] 42 0.034
UniRef100_Q91ZR9 Heterogeneous nuclear ribonucleoprotein A2/B1 [... 42 0.034
UniRef100_Q8CJ71 Heterogeneous nuclear ribonucleoprotein A2/B1/B... 42 0.034
UniRef100_Q8C2A0 Mus musculus 2 days neonate thymus thymic cells... 42 0.034
UniRef100_Q6PCV9 Hnrpa2b1 protein [Mus musculus] 42 0.034
>UniRef100_UPI000043475B UPI000043475B UniRef100 entry
Length = 294
Score = 45.1 bits (105), Expect = 0.005
Identities = 32/108 (29%), Positives = 48/108 (43%), Gaps = 8/108 (7%)
Query: 22 SRQAAGGTFGDLSSVDDEGDDEGEQ-DGGDARVARVVAPPAR-------TCFPLFVDGIA 73
SR+ TF ++ VD DG + R VAP T LFV G+
Sbjct: 48 SRRFGFVTFSSMAEVDAAMAARSHSIDGREVEPKRAVAPEESGKPGAHVTVKKLFVGGMK 107
Query: 74 DSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
+ H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 108 EDTEEHHLRDSFEEYGKIDTIEIITDRQPGKKRGFGFVTFDDHDPVDK 155
>UniRef100_UPI0000193F7E UPI0000193F7E UniRef100 entry
Length = 287
Score = 44.3 bits (103), Expect = 0.009
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 55 RVVAPP-ARTCFPLFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRY 113
RVV P A T +FV GI + H+RD F Q+GK+ V + R G+K F FV +
Sbjct: 91 RVVEPKRALTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVVEIMTDRGSGKKRGFAFVTF 150
Query: 114 ANREDVMK 121
+ + V K
Sbjct: 151 DDHDSVDK 158
>UniRef100_UPI000021B564 UPI000021B564 UniRef100 entry
Length = 303
Score = 43.9 bits (102), Expect = 0.012
Identities = 37/117 (31%), Positives = 55/117 (46%), Gaps = 8/117 (6%)
Query: 18 GGITSRQ-AAGGTFGDLSSVDD---EGD-DEGEQDGGDARVARVVAPPARTCFPLFVDGI 72
GGI S AAGG S GD EGE+ GG A T L V +
Sbjct: 174 GGILSAPGAAGGAGAKKGSYVPPALRGDRKEGEKMGGGAGGKYGERDDLAT---LRVTNV 230
Query: 73 ADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMKGRSRKQSY 129
++ +RD+F + G++T VFL + R+ G F F+ +A+RED +K ++ +
Sbjct: 231 SEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKACNKMDGW 287
>UniRef100_Q6YVH4 Putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa]
Length = 374
Score = 43.5 bits (101), Expect = 0.015
Identities = 43/151 (28%), Positives = 61/151 (39%), Gaps = 23/151 (15%)
Query: 29 TFGDLSSVDDEGDDEGEQDGGDARVARVV---------APPARTCFPLFVDGIADSVNYF 79
TF D S +D +DE DG V R V P R +FV G+ S+
Sbjct: 113 TFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRK---IFVGGLPSSLTED 169
Query: 80 HVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV----MKGRSR----KQSYVS 131
+R+ F +GK+ + + GR FGFV + + + V +GR R KQ +
Sbjct: 170 ELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIK 229
Query: 132 MAPPTT---VKDSRAKERLHLSGGFASSSRS 159
A P S + GG+ SS RS
Sbjct: 230 KAEPKKHGGDHSSNGRSSHGSGGGYRSSYRS 260
>UniRef100_Q6YVH3 Putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa]
Length = 397
Score = 43.5 bits (101), Expect = 0.015
Identities = 43/151 (28%), Positives = 61/151 (39%), Gaps = 23/151 (15%)
Query: 29 TFGDLSSVDDEGDDEGEQDGGDARVARVV---------APPARTCFPLFVDGIADSVNYF 79
TF D S +D +DE DG V R V P R +FV G+ S+
Sbjct: 113 TFSDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRK---IFVGGLPSSLTED 169
Query: 80 HVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDV----MKGRSR----KQSYVS 131
+R+ F +GK+ + + GR FGFV + + + V +GR R KQ +
Sbjct: 170 ELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIK 229
Query: 132 MAPPTT---VKDSRAKERLHLSGGFASSSRS 159
A P S + GG+ SS RS
Sbjct: 230 KAEPKKHGGDHSSNGRSSHGSGGGYRSSYRS 260
>UniRef100_Q9LMQ1 F7H2.17 protein [Arabidopsis thaliana]
Length = 1006
Score = 43.5 bits (101), Expect = 0.015
Identities = 26/61 (42%), Positives = 30/61 (48%), Gaps = 8/61 (13%)
Query: 431 DDPVLDFSPPRP--RPRGRPKRKKEVKRGLEGSRRPQGHPRKSGTMDLDAAPSPSHPSPP 488
++P L F PPRP RPR RP+ + L S P HPR S P P PSPP
Sbjct: 90 ENPFLPFQPPRPPPRPRPRPRPSPRLPPPLVPSPPPPLHPRPS------PCPPPLMPSPP 143
Query: 489 P 489
P
Sbjct: 144 P 144
>UniRef100_Q9TTV2 Vitamin D response element binding protein [Saguinus oedipus]
Length = 341
Score = 43.1 bits (100), Expect = 0.020
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
>UniRef100_UPI0000247080 UPI0000247080 UniRef100 entry
Length = 352
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 113 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 167
>UniRef100_UPI000021D8C8 UPI000021D8C8 UniRef100 entry
Length = 301
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
>UniRef100_UPI00001CF2CD UPI00001CF2CD UniRef100 entry
Length = 333
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
>UniRef100_UPI00002327FD Heterogenous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 399
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 160 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 214
>UniRef100_UPI000013D617 UPI000013D617 UniRef100 entry
Length = 411
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 172 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 226
>UniRef100_UPI00003ABA4C UPI00003ABA4C UniRef100 entry
Length = 240
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 94 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 148
>UniRef100_UPI00003ABA4B UPI00003ABA4B UniRef100 entry
Length = 262
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 93 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 147
>UniRef100_UPI00003ABA49 UPI00003ABA49 UniRef100 entry
Length = 269
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 99 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 153
>UniRef100_Q5ZME1 Hypothetical protein [Gallus gallus]
Length = 349
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 110 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 164
>UniRef100_Q91ZR9 Heterogeneous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
>UniRef100_Q8CJ71 Heterogeneous nuclear ribonucleoprotein A2/B1/B0 [Mus musculus]
Length = 353
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 114 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 168
>UniRef100_Q8C2A0 Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-
length enriched library, clone:E430035K14
product:heterogeneous nuclear ribonucleoprotein A2/B1,
full insert sequence [Mus musculus]
Length = 301
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 102 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 156
>UniRef100_Q6PCV9 Hnrpa2b1 protein [Mus musculus]
Length = 219
Score = 42.4 bits (98), Expect = 0.034
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 67 LFVDGIADSVNYFHVRDLFLQHGKLTNVFLQRKRNRGRKFRFGFVRYANREDVMK 121
LFV GI + H+RD F ++GK+ + + R G+K FGFV + + + V K
Sbjct: 20 LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDK 74
Database: uniref100
Posted date: Jan 5, 2005 1:24 AM
Number of letters in database: 848,049,833
Number of sequences in database: 2,790,947
Lambda K H
0.320 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 927,982,633
Number of Sequences: 2790947
Number of extensions: 41683029
Number of successful extensions: 147734
Number of sequences better than 10.0: 492
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 146507
Number of HSP's gapped (non-prelim): 1241
length of query: 526
length of database: 848,049,833
effective HSP length: 132
effective length of query: 394
effective length of database: 479,644,829
effective search space: 188980062626
effective search space used: 188980062626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)
Lotus: description of TM0005.12