BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0003.6
         (1307 letters)

Database: uniref100 
           2,790,947 sequences; 848,049,833 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa]                  970  0.0
UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]                  960  0.0
UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidops...   888  0.0
UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]        881  0.0
UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidop...   875  0.0
UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]                  869  0.0
UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]                            865  0.0
UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]                  863  0.0
UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidop...   857  0.0
UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidop...   855  0.0
UniRef100_P10978 Retrovirus-related Pol polyprotein from transpo...   853  0.0
UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]              845  0.0
UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]             811  0.0
UniRef100_O81903 Putative transposable element [Arabidopsis thal...   795  0.0
UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum]                              782  0.0
UniRef100_Q7XFG2 Putative retroelement [Oryza sativa]                 664  0.0
UniRef100_Q6L3N8 Putative gag-pol polyprotein [Solanum demissum]      655  0.0
UniRef100_Q9C739 Copia-type polyprotein, putative [Arabidopsis t...   645  0.0
UniRef100_Q9SXB2 T28P6.8 protein [Arabidopsis thaliana]               642  0.0
UniRef100_Q9AUZ1 Polyprotein, putative [Arabidopsis thaliana]         604  e-171

>UniRef100_Q6AUC7 Putative polyprotein [Oryza sativa]
          Length = 1241

 Score =  970 bits (2507), Expect = 0.0
 Identities = 554/1249 (44%), Positives = 770/1249 (61%), Gaps = 60/1249 (4%)

Query: 91   MSKTPMNKLFAKQRLYSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSL 150
            M+K   +K+  KQ+L+  K+Q+ G +  H+ AF  I+AD+  + V  D+ED  +ILLCSL
Sbjct: 1    MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60

Query: 151  PGSYDHLVTTLTYGKDSITLDSISSTLLPHAQRRQSV-EEGGGSSGEGLFVKGGQDRGRG 209
            P SY +   T+ Y +D++TL  +   L    + ++ V  EG  S  EGL V+G Q     
Sbjct: 61   PSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNT 120

Query: 210  KGKAVDSGK---KKRSKSKDRKTTECYSCKQIGH-----WK-RDCPNRSGK-----SGNN 255
              K+ D      + RSKS+ R  + C  CK+ GH     WK +D   R+ K         
Sbjct: 121  NNKSRDKSSSIYRGRSKSRGRYKS-CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEE 179

Query: 256  SSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYL 315
               A VV  + S +E  +      + +D W+LD+ C+YHM  +R+WF ++++   G V +
Sbjct: 180  EGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLM 239

Query: 316  GDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMKNLISLGTLHENGYSFKSEENRDI 375
            GDD PC + G+  V+I + DG +RTL  VR++  + ++LISL TL   GY +   +   I
Sbjct: 240  GDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDG--I 297

Query: 376  LRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASVE---TDDDATKLWHMRLGHLSERGM 432
            L+V+KG++ VM+A     N+Y L G TI+G+VA+V    ++ DAT LWHMRLGH+SE G+
Sbjct: 298  LKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGL 357

Query: 433  MELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV 492
             EL KR +L G     +  C++C+ GK  RV+F T  H T+GILDYVHSD+ GP ++ S 
Sbjct: 358  AELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSF 417

Query: 493  *GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTD 552
             G RY +T  DD+SRKVW YF+K+K + F  FK WK  VE QT RK+K LR+DNG E   
Sbjct: 418  GGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCS 477

Query: 553  KNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMA 612
            K F  +C+  GI RH++V  TPQQNGVAERMNRT+  KARC+  NA L K  WA  ++ A
Sbjct: 478  KIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTA 537

Query: 613  CYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIII 672
            CYL+NRSP  ++D K   EVW+G+P + S+LR+F   AY H+   D  KL+P+   CI +
Sbjct: 538  CYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRVIKCIFL 594

Query: 673  GYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQSDVTVVPDTEVENSSQDKIQVDIEE 732
            GY  GVKGYKLW P  KKV++SR+VVF E  ML        P T V   SQ+K+ V +E 
Sbjct: 595  GYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDK-----PSTNVPVESQEKVSVQVEH 649

Query: 733  TPVS----PRQIVAQQQSEP---GSDSGEVQD---YTLVRDREPSRITPPVRYGFE-DLA 781
               S     ++ VA  Q  P    SDS  VQ     ++ +DR      PP RY  E ++ 
Sbjct: 650  LISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEANIV 709

Query: 782  AYAL-----LTSSGDPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVI 836
            AYAL     +  + +PSTY +A+ S + ++W++AM +EMESL+KN +  L +LP  K+ I
Sbjct: 710  AYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPI 769

Query: 837  GCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASM 896
             CKW++K+K  ++  +  ++KA LV KGYSQ  GID++++FSPVV+H+SIR +L++VA  
Sbjct: 770  RCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMH 829

Query: 897  DMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRF 956
            D  LEQMDVKT FLHG LEE IY+EQPEGF   G   LVC+LK+SLYGLKQSPRQWYKRF
Sbjct: 830  DYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRF 889

Query: 957  DSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFD 1016
            DS+ML   +RR +YD CVY + + DGS I+LLLYVDDMLIAA    ++ +LK +L  EF+
Sbjct: 890  DSFMLSQKFRRSNYDSCVY-LKVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFE 948

Query: 1017 MKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLE 1076
            MKDLGAAKKILGMEI ++R + KL+LSQK Y+E VL RF+M  A  VST L  HF+LS +
Sbjct: 949  MKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSD 1008

Query: 1077 QSPKIDSEIEGMSKIPY--AVQLVV*CMLWFALDQIWHKQLVKCQVHVQAREAALGSSQV 1134
              P+   +IE MS++PY  AV  ++  M+    D + H   V  +      +    + Q 
Sbjct: 1009 LCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPD-LSHALSVVSRYMANPGKEHWKAVQW 1067

Query: 1135 DPKILEGYNGSRYHV*QGARCCSISCGICGLCR*SR**KVYNRICL----YSCGG-PICW 1189
              + L G + +     +       S G+ G         +  R  L    ++ GG  + W
Sbjct: 1068 IFRYLRGTSSACLQFGRS------SDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSW 1121

Query: 1190 KSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAIYLTNNQ 1249
            K+S+Q+TVA+STTEAEYMA++EA KE +WL GL  EL      + + CDSQSAI LT +Q
Sbjct: 1122 KASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQ 1181

Query: 1250 VYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
            ++H RTKHID+R+H IR ++A   + + KI T +N  D +TKPV + KF
Sbjct: 1182 MFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKF 1230


>UniRef100_Q75HA9 Putative polyprotein [Oryza sativa]
          Length = 1322

 Score =  960 bits (2482), Expect = 0.0
 Identities = 557/1334 (41%), Positives = 780/1334 (57%), Gaps = 67/1334 (5%)

Query: 5    KFEVTRFDGTGNFGLWQRMAKDLLAQKS-LQKALRD--EKPADIATVDWNEMKEKAAGLI 61
            K+++   D    F LWQ   + +LAQ S L +AL    +K     T +      KA  LI
Sbjct: 5    KYDLPLLDYKTRFSLWQVKMRAVLAQTSDLDEALESFGKKKTTEWTAEEKRKDRKALSLI 64

Query: 62   TLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHVY 121
             L +S+D++  +L   T  ++W KLES+ MSK   +K+  K +L+S K+ E G +  H+ 
Sbjct: 65   QLHLSNDILQEVLQKKTAAELWLKLESICMSKDLTSKMHIKMKLFSHKLHESGSVLNHIS 124

Query: 122  AFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLDSISSTLLPHA 181
             F  I+AD+  + V  DDED  ++LLCSLP SY +   T+   +D +TL  +   L    
Sbjct: 125  VFKEIVADLVSMEVQFDDEDLGLLLLCSLPSSYANFRHTILLSRDELTLAEVYEALQNRE 184

Query: 182  QRRQSVEEGGGSS-GEGLFVKGGQDRGRGKGKAVDSGKKKRSKSKDRKTTECYSCKQIGH 240
            + +  V+    SS GE L V+G  ++            + R +SK R    C  CK+  H
Sbjct: 185  KMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGRSKSRGKKFCKYCKKKNH 244

Query: 241  WKRDCPNRSGKSGNNSSS-ANVVQSDGSCSEEDLLCVSS--VKCTDAWVLDSGCSYHMTQ 297
            +  +C     K    S   A+VV S  +    D L V +  V   D W+LD+ CS+H+  
Sbjct: 245  FIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILDTACSFHICI 304

Query: 298  HREWFNSFKS-GDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMKNLIS 356
            +R+WF+S+KS  +   V +GDD P  I G+  V+I   DG  RTL  VR++  + +NLIS
Sbjct: 305  NRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLIS 364

Query: 357  LGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDV--ASVETDD 414
            L TL   GY +       +++VSKG++  M     + N+Y L G T+ G V  A+V  D+
Sbjct: 365  LSTLDAEGYKYSGSGG--VVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDE 422

Query: 415  DA-TKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKTGHHKTK 473
             + T LWHMRLGH+SE GM EL KRN+L G     +  C++CV GK  RV+F T  H+TK
Sbjct: 423  PSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTK 482

Query: 474  GILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEVEN 533
            GILDYVH+D+ GP+++PS+ G RY +T  DD+SRK W YF+K+K + FA FK  K  +E 
Sbjct: 483  GILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIER 542

Query: 534  QTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKARC 593
            QT +++K L +DNG E+    F  +C + GI RH ++  TPQQNGVAERMNRT+  KARC
Sbjct: 543  QTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNRTIISKARC 602

Query: 594  LRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAYVH 653
            +  NA ++K  WA   N ACYL+NRSP   L+ K   E+W+G P D S LR+F   AY H
Sbjct: 603  MLSNARMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPADYSQLRVFGCTAYAH 662

Query: 654  ISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQSDVT-V 712
            +   D  KL+P++  C+ +GY  GVKGYKLW+P   K  +SR+V+F+E  M   S  T V
Sbjct: 663  V---DNGKLEPRAIKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFNDSLPTDV 719

Query: 713  VPDTEVENSSQDKIQVDIEETPVSPRQIVAQQQSEPGSDSGEV---QDYTLVRDREPSRI 769
            +P    E   Q  + V +E       +IV    ++    S  V   QD  +   R     
Sbjct: 720  IPGGSDEE--QQYVSVQVEHVDDQETEIVGNDVNDTVQHSPSVLQPQDEPIAHRRTKRSC 777

Query: 770  TPPVRYGFE-DLAAYAL-----LTSSGDPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET 823
              PVR   E D+  YA      + ++ +P+TY EA+ S +++KW+SA+ EEM+SL+KN T
Sbjct: 778  GAPVRLIEECDMVYYAFSYAEQVENTLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGT 837

Query: 824  *NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRH 883
              LV LP  K+ + CKW++K+K  ++  E  +FK  LV KG+SQ  G+DY+++FSPVV+H
Sbjct: 838  WELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVAKGFSQIAGVDYNDVFSPVVKH 897

Query: 884  TSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLY 943
            +SIR   ++V   D+ LEQ+DVKTTFLHG LEE+IY++QPEGF   G    VCKLKRSLY
Sbjct: 898  SSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLY 957

Query: 944  GLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHD 1003
            GLKQSPRQWYKRFDS+ML  G++R ++D CVY+  ++ GS I+LLLYVDDMLIAA     
Sbjct: 958  GLKQSPRQWYKRFDSFMLSHGFKRSEFDSCVYIKFVN-GSPIYLLLYVDDMLIAAKSKEQ 1016

Query: 1004 VNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHV 1063
            +  LK +L  EFDMKDLGAAKKILGMEI +DR +  L+LSQ+SY++ VL RF+M  A  V
Sbjct: 1017 ITTLKKQLSSEFDMKDLGAAKKILGMEITRDRNSGLLFLSQQSYIKKVLQRFNMHDAKPV 1076

Query: 1064 STPLTNHFKLSLEQSPKIDSEIEGMSKIPY--AVQLVV*CMLWFALDQIWHKQLVKCQVH 1121
            STP+  HFKLS  Q    D ++E MS++PY  AV  ++  M+    D      LV   + 
Sbjct: 1077 STPIAPHFKLSALQCASTDEDVEYMSRVPYSSAVGSLMYAMVCSWPDLSHAMSLVSRYMA 1136

Query: 1122 VQARE-----------------AALGSSQVDPKILEGYNGSRYHV*QGARCCSISCGICG 1164
               +E                 A L   ++D K L GY  S +      R       + G
Sbjct: 1137 NPGKEHWKAVQWIFRYLRGTADACLKFGRID-KGLVGYVDSDFAADLDKRR-----SLTG 1190

Query: 1165 LCR*SR**KVYNRICLYSCGGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVK 1224
                           + SC   + WK+++Q  VA STTEAEYMA+AEA KE++WL GL  
Sbjct: 1191 YV-----------FTIGSCA--VSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFA 1237

Query: 1225 ELGVEQGGVQLHCDSQSAIYLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSEN 1284
            EL      + L CDSQSAI LT +Q++H RTKHID+++H +R+++A  ++ + KI   +N
Sbjct: 1238 ELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDIVAQGKLKVCKISIHDN 1297

Query: 1285 TTDKLTKPVTSDKF 1298
              D +TKP+   KF
Sbjct: 1298 PADMMTKPIPVAKF 1311


>UniRef100_Q9FFM0 Copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  888 bits (2294), Expect = 0.0
 Identities = 537/1381 (38%), Positives = 768/1381 (54%), Gaps = 148/1381 (10%)

Query: 7    EVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDEKPADI--ATVDWN------------- 51
            EV +FDG G++ LW+      +    L + L +E+ A +  +T + +             
Sbjct: 7    EVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEISDGGNQDPETATSK 66

Query: 52   -------EMKEKAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQR 104
                   E + KA   I L + ++V+  ++   T   +   L+ L+M+K+  N+++ KQR
Sbjct: 67   LEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPNRIYLKQR 126

Query: 105  LYSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYG 164
            LY  KM E   ++ +V  F  +++D+  + V V DED+AI+LL SLP  +D L  TL Y 
Sbjct: 127  LYGYKMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQFDQLKETLKYC 186

Query: 165  KDSITLDSISSTLLPHAQRRQSVEEGGGS------SGEGLFVKGGQDRGRGKGKAVDSGK 218
            K ++ L+ I+S +      R  + E G S      + +GLFV   QDRGR + +     K
Sbjct: 187  KTTLHLEEITSAI------RSKILELGASGKLLKNNSDGLFV---QDRGRSETRGKGPNK 237

Query: 219  KK-RSKSKDRKTTECYSCKQIGHWKRDC-----PNRSGKSGNNSSSANVVQ--SDGSCSE 270
             K RSKSK    T C+ C + GH+K+ C      N+ G +     ++ V    +D +   
Sbjct: 238  NKSRSKSKGAGKT-CWICGKEGHFKKQCYVWKERNKQGSTSERGEASTVTARVTDAAALV 296

Query: 271  EDLLCVSSVKCT-DAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQV 329
                 +   + T D W+LD+GCS+HMT  ++W   FK    G V +G+D    +KG+  V
Sbjct: 297  VSRALLGFAEVTPDTWILDTGCSFHMTCRKDWIIDFKETASGKVRMGNDTYSEVKGIGDV 356

Query: 330  KIALDDGGVRTLSQVRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAK 389
            +I  +DG    L+ VRY+ E+ KNLISLGTL + G  F+S++   IL + K  +TV+  K
Sbjct: 357  RIKNEDGSTILLTDVRYIPEMSKNLISLGTLEDKGCWFESKKG--ILTIFKNDLTVLTGK 414

Query: 390  RTAGNIYKLLGGTIMGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCII 449
            + +  +Y L G T+ G+   ++ + D T LWH RLGH+  +G+  L  +  L        
Sbjct: 415  KES-TLYFLQGTTLAGEANVIDKEKDETSLWHSRLGHIGAKGLQVLVSKGHLD------- 466

Query: 450  GLCKYCVLGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEP-SV*GFRYFVTFTDDFSRK 508
                     K   + F    H TK  LDYVHSD+ G T  P S+   +YF+TF DDF+R+
Sbjct: 467  ---------KNIMISFGAAKHVTKDKLDYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRR 517

Query: 509  VWVYFMKYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHF 568
             W+YF++ K E F+KF  WK ++ENQ  +K+K L +DNG E+ ++ F  FC + G+ RH 
Sbjct: 518  TWIYFIRTKDEAFSKFVEWKTQIENQQDKKLKILITDNGLEFCNQEFDSFCRKEGVIRHR 577

Query: 569  SVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKV 628
            +   TPQQNGVAERMNRT+  K RC+   + L K  WA   + A +L+N+SP +S++  +
Sbjct: 578  TCAYTPQQNGVAERMNRTIMNKVRCMLSESGLGKQFWAEAASTAVFLINKSPSSSIEFDI 637

Query: 629  AEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVK 688
             EE WTG+P D   L+ F   AY+H    D+ KL+P++K  I +GY  GVK +K+W    
Sbjct: 638  PEEKWTGHPPDYKILKKFGSVAYIH---SDQGKLNPRAKKGIFLGYPDGVKRFKVWLLED 694

Query: 689  KKVIVSRDVVFDE*SMLKQSDVTVVPDTEVENSSQDKIQVDIEETPVSPRQIVA--QQQS 746
            +K +VSRD+VF E  M K+           + S +DK   ++E T +  + + A  + QS
Sbjct: 695  RKCVVSRDIVFQENQMYKELQKN-------DMSEEDKQLTEVERTLIELKNLSADDENQS 747

Query: 747  EPGSDSGEVQ------------------------DYTLVRDREPSRITPPVRYGFED--L 780
            E G +S + Q                        +Y L RDR   +I  P R+  ED  L
Sbjct: 748  EGGDNSNQEQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSL 807

Query: 781  AAYAL-LTSSGD---PSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVI 836
              +AL +T  G+   P TY EAM S E +KW  A +EEM+S+KKN+T +++  P GKRVI
Sbjct: 808  VGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVI 867

Query: 837  GCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASM 896
            GCKW++K+K  +   E  ++KA LV KG+SQ +GIDY EIFSPVV+H SIR +L++V   
Sbjct: 868  GCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQF 927

Query: 897  DMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRF 956
            DM LEQ+DVKT FLHGNL+E I + QPEG+ +      VC LK+SLYGLKQSPRQW +RF
Sbjct: 928  DMELEQLDVKTAFLHGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRF 987

Query: 957  DSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFD 1016
            DS+M+  GY+R  Y+ CVY   L+DGS+I+LLLYVDDMLIA+ +   + +LK  L +EF+
Sbjct: 988  DSFMINSGYQRSKYNPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFE 1047

Query: 1017 MKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLE 1076
            MKDLG A+KILGMEI ++R    L LSQ  YV GVL  F M ++    TPL  HFKL   
Sbjct: 1048 MKDLGPARKILGMEITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAA 1107

Query: 1077 QSPKIDSEIEGMSKIPY--AVQLVV*CMLWFALDQIW---------------HKQLVKCQ 1119
                +  + E M  +PY  A+  ++  M+    D  +               H Q VK  
Sbjct: 1108 NEKTLARDAEYMKLVPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWV 1167

Query: 1120 VHVQ--AREAALGSSQVDPKILEGYNGSRYHV*QGARCCSISCGICGLCR*SR**KVYNR 1177
            +      ++  L   + D   + GY  S Y     A        I G             
Sbjct: 1168 MRYMKGTQDTCLRFKKDDKFEIRGYCDSDY-----ATDLDRRRSITGF------------ 1210

Query: 1178 ICLYSCGG-PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLH 1236
              +++ GG  I WKS +Q  VA+STTEAEYMA+AEA KEA+WL GL  E+G EQ  V++ 
Sbjct: 1211 --VFTAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVM 1268

Query: 1237 CDSQSAIYLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSD 1296
            CDSQSAI L+ N V+H RTKHIDVR+H IRE +A  +I + KI T+ N  D  TK V   
Sbjct: 1269 CDSQSAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQVVKISTTWNPADIFTKTVPVS 1328

Query: 1297 K 1297
            K
Sbjct: 1329 K 1329


>UniRef100_Q9M1F5 Copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score =  881 bits (2276), Expect = 0.0
 Identities = 526/1365 (38%), Positives = 770/1365 (55%), Gaps = 85/1365 (6%)

Query: 3    GAKFEVTRFDGTGNFGLWQRMAK---DLLA--------------QKSLQKALRDEKPADI 45
            GA+ EV +FDG G++ +W+       D+L               ++  +K+  DEK    
Sbjct: 3    GARIEVEKFDGRGDYTMWKEKLLAHIDMLGLSAVLRESETPMGKERDSEKSDEDEKEERE 62

Query: 46   ATVDWNEMKEKAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRL 105
                + E K KA   I L VSD V+  I   T+   + + L+ LYMSK   N+++ KQ+L
Sbjct: 63   KMEAFEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKL 122

Query: 106  YSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTY-- 163
            YS KM E   ++ ++  F +I+AD+  L V V DED+AI+LL SLP  +D L  TL Y  
Sbjct: 123  YSFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSS 182

Query: 164  GKDSITLDSISSTLLPHAQRRQSVEEGGGSSGEGLFVKGGQDRGRGKGKAVDSGKKKRSK 223
            GK  ++LD +++ +        SV++      EGL+VK   +  RG+ +  D GK KRSK
Sbjct: 183  GKTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGLYVKDKAEN-RGRSEQKDKGKGKRSK 241

Query: 224  SKDRKTTECYSCKQIGHWKRDCPNRS----------------GKSGNNSSSANVVQSDGS 267
            SK ++   C+ C + GH K  CPN++                GK      S N V+S G 
Sbjct: 242  SKSKRG--CWICGEDGHLKSTCPNKNKPQFKNQGSNKGESSGGKGNLVEGSVNFVESAGM 299

Query: 268  CSEEDLLCVSSVKCTDAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMR 327
               E  L  + +   D W++D+GC YHMT  REW   F     G V +G+     +KG+ 
Sbjct: 300  FVSE-ALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISRVKGVG 358

Query: 328  QVKIALDDGGVRTLSQVRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMR 387
             V+I  D+G   TL  VRY+ ++ +NL+SLGT  + G+ F+SE    +LR+  G   ++ 
Sbjct: 359  TVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENG--MLRIKSGNQVLLE 416

Query: 388  AKRTAGNIYKLLGGTIMGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSC 447
             +R    +Y L G     +  +V   +D T LWH RL H+S++ M  L K+  L   +  
Sbjct: 417  GRRY-DTLYILHGKPATDESLAVARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVS 475

Query: 448  IIGLCKYCVLGKQCRVRFKTGHHKTKGILDYVHSDVRG-PTKEPSV*GFRYFVTFTDDFS 506
            ++  C+ C+ G+  ++ F    H TK  L+YVHSD+ G PT   S+   +YF++F DD++
Sbjct: 476  MLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYT 535

Query: 507  RKVWVYFMKYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQR 566
            RKVWVYF+K K E F KF  W + VENQ+G ++K LR+DNG E+ ++ F  FCEE G QR
Sbjct: 536  RKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQR 595

Query: 567  HFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDG 626
            H +   TPQQNGV ERMNRT+ EK R +  ++ L K  WA   + A  L+N++P ++++ 
Sbjct: 596  HRTCAYTPQQNGVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINF 655

Query: 627  KVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDP 686
            +  ++ W+G     S LR +    +VH    D  KL+ ++K  ++IGY  GVKGYK+W  
Sbjct: 656  EFPDKRWSGKAPIYSYLRRYGCVTFVHT---DGGKLNLRAKKGVLIGYPSGVKGYKVWLI 712

Query: 687  VKKKVIVSRDVVFDE*SMLKQ-SDVTVVPDTEVENSSQDKIQVDIE------------ET 733
             +KK +VSR+V F E ++ K           E ++ +   I +D+E            + 
Sbjct: 713  EEKKCVVSRNVSFQENAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSGGEQSQA 772

Query: 734  PVSPRQIVAQQQSEPGSDSGEVQD---------YTLVRDREPSRITPPVRYGFEDLAAYA 784
             V+P    A   + P  ++ ++++         Y LVRDRE   I  P R+  ED  A A
Sbjct: 773  QVTPATRGAVTSTPPRYETDDIEETDVHQSPLSYHLVRDRERREIRAPRRFDDEDYYAEA 832

Query: 785  LLTSSG----DPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKW 840
            L T+      +P+ Y EA+     DKW  AM EE+ES  KN+T   V  P  +R+IG +W
Sbjct: 833  LYTTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRW 892

Query: 841  VYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHL 900
            +YK K  +   E  +FKA LV KGY+Q +G+DY EIF+PVV+H SIR++L++VA  ++ L
Sbjct: 893  IYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLEL 952

Query: 901  EQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYM 960
            EQ+DVKT FLHG L+E+IY+  PEG         VC L +SLYGLKQ+PRQW ++F+ YM
Sbjct: 953  EQLDVKTAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYM 1012

Query: 961  LRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDL 1020
              IG++R DYD C Y   L D S ++LL YVDDML+AAN++  ++ LK +L  +F+MKDL
Sbjct: 1013 TEIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDL 1072

Query: 1021 GAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPK 1080
            GAAKKILG+EI  DR A  LWLSQ+SY+  VL  F+M ++    TPL  H K+      K
Sbjct: 1073 GAAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEK 1132

Query: 1081 IDSEIEGMSKIPY--AVQLVV*CMLWFALDQIWHKQLVKCQVHVQAREAALGSSQVDPKI 1138
            + +E E M+ +PY  AV  ++  M+    D  +   +V   +   A+E  LG   V  + 
Sbjct: 1133 LSTEEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWV-LRY 1191

Query: 1139 LEGYNGSRYHV*QGARCCSISCGICGLCR*SR**KVYNRICL----YSCGG-PICWKSSV 1193
            ++G   +R    + +        ICG C       +  R  +    ++ GG  I WKS +
Sbjct: 1192 IKGTVDTRLCYKRNS-----DFSICGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGL 1246

Query: 1194 QSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAIYLTNNQVYHA 1253
            Q  VA S+TE EYM++ EA KEA+WL GL+K+ G EQ  V++ CDSQSAI L+ N V+H 
Sbjct: 1247 QRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALSKNNVHHE 1306

Query: 1254 RTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
            RTKHIDV+FH IRE++A  ++ + KI T +N  D  TK +  +KF
Sbjct: 1307 RTKHIDVKFHFIREIIADGKVEVSKISTEKNPADIFTKVLPVNKF 1351


>UniRef100_Q9SH77 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  875 bits (2261), Expect = 0.0
 Identities = 516/1360 (37%), Positives = 758/1360 (54%), Gaps = 84/1360 (6%)

Query: 4    AKFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDEKPA-------DIATVDWNEM--- 53
            A+ EV +FDG G++ +W+      +    L  AL++ +         D +  D+ E    
Sbjct: 4    ARIEVEKFDGRGDYTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEK 63

Query: 54   -------KEKAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLY 106
                   K+KA   I L V+D V+  I   +T   +   L+ LYMSK   N+++ KQ+LY
Sbjct: 64   FEALEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLYMSKALPNRIYPKQKLY 123

Query: 107  SLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTY--G 164
            S KM E   ++ ++  F  I+ D+  + V + DED+AI+LL +LP ++D L  TL Y  G
Sbjct: 124  SFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYSSG 183

Query: 165  KDSITLDSISSTLLPHAQRRQSVEEGGGSSGEGLFVKGGQDRGRGKGKAVDSGKKKRSKS 224
            K  +TLD +++ +        SV++      EGL+VK   D+   KGK    GK K  K 
Sbjct: 184  KSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVK---DKNENKGKGEQKGKGKGKKG 240

Query: 225  KDRKTTECYSCKQIGHWKRDCPNRSG---------KSGNNSSSANVVQSDGSCSEEDLLC 275
            K +K   C++C + GH++  CPN++          K  ++    N+ ++ G    E  L 
Sbjct: 241  KSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQVVKGESSGGKGNLAEAAGYYVSE-ALS 299

Query: 276  VSSVKCTDAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDD 335
             + V   D W+LD+GCSYHMT  REWF+ F     G V +G+     ++G+  +++   D
Sbjct: 300  STEVHLEDEWILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSD 359

Query: 336  GGVRTLSQVRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNI 395
            G    L+ VRY+ ++ +NL+SLGT  + GY F+SE+   ILR+  G   ++  +R    +
Sbjct: 360  GLTIVLTNVRYIPDMDRNLLSLGTFEKAGYKFESEDG--ILRIKAGNQVLLTGRRY-DTL 416

Query: 396  YKLLGGTIMGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYC 455
            Y L    +  +  +V    D T LWH RL H+S++ M  L ++  L   +   + +C+ C
Sbjct: 417  YLLNWKPVASESLAVVKRADDTVLWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDC 476

Query: 456  VLGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEP-SV*GFRYFVTFTDDFSRKVWVYFM 514
            + GK  R  F   HH TK  L+Y+HSD+ G    P S+   +YF++  DDF+RKVWVYFM
Sbjct: 477  IYGKAKRKSFSLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFM 536

Query: 515  KYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTP 574
            K K E F KF  W   VENQT R++K LR+DNG E+ +K F  FCE  GI RH +   TP
Sbjct: 537  KTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTP 596

Query: 575  QQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWT 634
            QQNGVAERMNRT+ EK R +  ++ L K  WA   +    L+N++P ++L+ ++ ++ W+
Sbjct: 597  QQNGVAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWS 656

Query: 635  GNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVS 694
            GNP   S LR +   A+VH    D  KL+P++K  ++IGY  GVKGYK+W   ++K +VS
Sbjct: 657  GNPPVYSYLRRYGCVAFVHT---DDGKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVS 713

Query: 695  RDVVFDE*SMLK-----QSDVTVVPDTEVEN-------------SSQDKIQVDIEETPVS 736
            R+++F E ++ K     Q +V+   D +  +             S  D+  V+    P S
Sbjct: 714  RNIIFQENAVYKDLMQRQENVSTEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPES 773

Query: 737  PRQIVAQQQSEPGSDSGEVQD----YTLVRDREPSRITPPVRYGFEDLAAYALLTSSG-- 790
            P       Q     +  +V      Y LVRDR+   I  P R+  ED  A AL T+    
Sbjct: 774  PVVSTPTTQDTNDDEDSDVNQSPLSYHLVRDRDKREIRAPRRFDDEDYYAEALYTTEDGE 833

Query: 791  --DPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAV 848
              +P  Y +A      DKW  AM EE++S +KN T  +V  P  +R+IGC+W++K KL +
Sbjct: 834  AVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGI 893

Query: 849  T*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTT 908
               E  +FKA LV KGY+Q +GIDY EIF+PVV+H SIRV+L++VA  D+ LEQ+DVKT 
Sbjct: 894  LGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLELEQLDVKTA 953

Query: 909  FLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRC 968
            FLHG L+E+IY+  PEG+        VC L ++LYGLKQ+P+QW ++FD++M  I + + 
Sbjct: 954  FLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNFMKEICFVKS 1013

Query: 969  DYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILG 1028
             YD C Y   L DGS ++LL+YVDD+L+A+ +   +  LK  LG  F+MKDLGAAKKILG
Sbjct: 1014 AYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKDLGAAKKILG 1073

Query: 1029 MEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGM 1088
            MEI +DR    LWLSQ+ Y+  +L  ++M++A    TPL  HFK       K+  + + M
Sbjct: 1074 MEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQAATEQKLIRDEDFM 1133

Query: 1089 SKIPY--AVQLVV*CMLWFALDQIWHKQLVKCQVHVQAREAALGSSQVDPKILEGYNGSR 1146
              +PY  AV  ++  ML    D  +   ++   +    +E  LG   V    L    G+ 
Sbjct: 1134 KSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVKWV----LRYIKGT- 1188

Query: 1147 YHV*QGARCC---SISCGICGLCR*SR**KVYNRICL----YSCGG-PICWKSSVQSTVA 1198
                   R C   S S  I G C       +  R  +    ++ GG  I WKS +Q  VA
Sbjct: 1189 ----LKTRLCYKKSSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVA 1244

Query: 1199 MSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAIYLTNNQVYHARTKHI 1258
             STTE+EYM++ EA KEA+WL GL+K+ G EQ  V++ CDSQSAI L+ N V+H RTKHI
Sbjct: 1245 QSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHI 1304

Query: 1259 DVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
            DV++H IRE+++   + + KI T +N  D  TK +   KF
Sbjct: 1305 DVKYHFIREIISDGTVEVLKISTEKNPADIFTKVLAVSKF 1344


>UniRef100_Q8LNW7 Putative polyprotein [Oryza sativa]
          Length = 1280

 Score =  869 bits (2246), Expect = 0.0
 Identities = 486/1091 (44%), Positives = 676/1091 (61%), Gaps = 53/1091 (4%)

Query: 5    KFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDEKPADIATVDW-NEMKEK---AAGL 60
            K+++   D    F LWQ   + +LAQ+ L  AL      D  T DW N+ K+K   A   
Sbjct: 40   KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSG---FDKRTQDWSNDEKKKDRKAMSY 96

Query: 61   ITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHV 120
            I L +S++++  +L   T   +W KLE + M+K   +K+  KQ+L+  K+Q+ G +  H+
Sbjct: 97   IHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMDHL 156

Query: 121  YAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLDSISSTLLPH 180
              F  I+AD+  + V  D+ED  +ILLCSLP SY +   T+ Y  D++ L  +   L   
Sbjct: 157  STFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAK 216

Query: 181  AQRRQSV-EEGGGSSGEGLFVKGGQDRGRGKGKAVD---SGKKKRSKSKDRKTTECYSCK 236
             + ++ V  EG  S  EGL V+G Q     K ++ D   S  + RSKS+ R  + C  CK
Sbjct: 217  EKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKS-CKYCK 275

Query: 237  QIGH-----WK-RDCPNRSGK-----SGNNSSSANVVQSDGSCSEEDLLCVSSVKCTDAW 285
            + GH     WK +D   R+GK            A VV  + S +E  +      + +D W
Sbjct: 276  RDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQW 335

Query: 286  VLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVR 345
            +LD+  +YHM  +R+WF ++++   G V +GDD PC + G+  V+I + DG +RTLS VR
Sbjct: 336  ILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVR 395

Query: 346  YVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMG 405
            ++  + ++LISL TL   GY +   +   IL+V+KG++ VM+A   + N+Y L G TI+G
Sbjct: 396  HIPNLKRSLISLCTLDRKGYKYSGGDG--ILKVTKGSLVVMKADIKSANLYHLRGTTILG 453

Query: 406  DVASVE---TDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCR 462
            +VA+V    ++ DAT LWHMRLGH+SE G+ EL KR +L G     +  C++C+ GK  R
Sbjct: 454  NVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKR 513

Query: 463  VRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFA 522
            V+F T  H T+GILDYVHSD+ GP  + S  G RY +T  DD+SRKVW YF+K+K + F 
Sbjct: 514  VKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFD 573

Query: 523  KFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAER 582
             FK WK  VE QT +K+K LR+DNG E+  K F  +C+  GI  H++V  TPQQNGVAER
Sbjct: 574  VFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAER 633

Query: 583  MNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSN 642
            MN  +  KARC+  NA L K  WA  ++  CYL+NRSP  + D K   EVW+G+P + S+
Sbjct: 634  MNMAIISKARCMLSNADLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSD 693

Query: 643  LRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE* 702
            LR+F   AY H+   D  KL+P++  CI +GY  GVKGYKLW P  KKV++SR+VVF E 
Sbjct: 694  LRVFGCTAYAHV---DNGKLEPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHES 750

Query: 703  SMLKQSDVTVVPDTEVENSSQDKIQVDIEETPVS----PRQIVAQQQSEP---GSDSGEV 755
             +L        P T V   SQ+K  V +E    S     ++ VA  Q  P    SDS  V
Sbjct: 751  VILHDK-----PSTNVPVESQEKASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIV 805

Query: 756  QD---YTLVRDREPSRITPPVRYGFE-DLAAYAL-----LTSSGDPSTYHEAMAS*EKDK 806
            Q     ++ +D+    I PP RY  E ++ AYAL     +  + +PSTY EA+ S + ++
Sbjct: 806  QQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNR 865

Query: 807  WMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYS 866
            W++AM +EMESLKKN T   V+LP  K+ I CKW++K+K  ++  +  ++KA LV KGYS
Sbjct: 866  WITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYS 925

Query: 867  QHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGF 926
            Q  GID++++FSP+++H+SIR +L +VA  D  LEQMDVKT FLHG LEE IY+EQPEGF
Sbjct: 926  QIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGF 985

Query: 927  SETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIF 986
               G   LVC+LK+SLYGLKQSPRQWYKRFDS+ML   +RR +YD CVY + + DGS I+
Sbjct: 986  VVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVY-LKVVDGSAIY 1044

Query: 987  LLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKS 1046
            LLLYVDDMLIAA    ++ +LK +L  EF MKDLGAAKKILGMEI ++R + KL+LSQK 
Sbjct: 1045 LLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQKG 1104

Query: 1047 YVEGVLSRFDM 1057
            Y++ VL RF+M
Sbjct: 1105 YIKKVLRRFNM 1115



 Score =  127 bits (320), Expect = 2e-27
 Identities = 62/120 (51%), Positives = 87/120 (71%), Gaps = 1/120 (0%)

Query: 1180 LYSCGG-PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCD 1238
            +++ GG  + WK+S+Q+TVA+STTEAEYMA++EA KEA+WL GL  EL      + + CD
Sbjct: 1150 VFTIGGCDVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCD 1209

Query: 1239 SQSAIYLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
            SQSAI LT +Q++H RTKHIDVR+H IR ++    + + KI T +N  D +TKPV++ KF
Sbjct: 1210 SQSAICLTKDQMFHERTKHIDVRYHIIRGVIVEGDVKVCKISTHDNPADMMTKPVSATKF 1269


>UniRef100_Q6BCY1 Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  865 bits (2236), Expect = 0.0
 Identities = 469/1100 (42%), Positives = 686/1100 (61%), Gaps = 29/1100 (2%)

Query: 4    AKFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDEKPADIAT-VDWNEMKEKAAGLIT 62
            AKFE+ +F+G  NF LW+   K +L + +   A+  E+P D      W+EM E A   + 
Sbjct: 3    AKFEIEKFNGK-NFSLWKLKVKAILRKDNCLAAI-SERPVDFTDDKKWSEMNEDAMADLY 60

Query: 63   LCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHVYA 122
            L ++D V++ I +  T  ++WD L  LY +K+  NK+F K++LY+L+M E   +  H+  
Sbjct: 61   LSIADGVLSSIEEKKTANEIWDHLNRLYEAKSLHNKIFLKRKLYTLRMSESTSVTEHLNT 120

Query: 123  FNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYG--KDSITLDSISSTLLPH 180
             N + + +T L   ++ +++A +LL SLP SYD L+  LT     D +  D +++ +L  
Sbjct: 121  LNTLFSQLTSLSCKIEPQERAELLLQSLPDSYDQLIINLTNNILTDYLVFDDVAAAVLEE 180

Query: 181  AQRRQSVEEGGGS--SGEGLFVKGGQDRGRGKGKAVDSGKKKRSKSKDRKTTECYSCKQI 238
              RR++ E+   +    E L V  G+   RG+     S  + RSKS  +  T CY+C + 
Sbjct: 181  ESRRKNKEDRQVNLQQAEALTVMRGRSTERGQ-----SSGRGRSKSSKKNLT-CYNCGKK 234

Query: 239  GHWKRDCPNRSGKSGNNSSSANVVQSDGS--CSEEDLLCVSSVKCTDAWVLDSGCSYHMT 296
            GH K+DC N +  S    + A+    DGS  C E  +      +  D W++DSG +YHMT
Sbjct: 235  GHLKKDCWNLAQNSNPQGNVAST-SDDGSALCCEASIAREGRKRFADIWLIDSGATYHMT 293

Query: 297  QHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMKNLIS 356
              +EWF+ ++    G VY  DD    I G+  +K+ + DG V+T+  VR+V  + KNL+S
Sbjct: 294  SRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQTVQDVRHVKGLKKNLLS 353

Query: 357  LGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASVET-DDD 415
             G L  +    ++++   ++++ +GA+ VM+ ++ A N+Y L G T+    ASV     D
Sbjct: 354  YGILDNSATQIETQKG--VMKIFQGALVVMKGEKIAANLYMLKGETLQEAEASVAACSPD 411

Query: 416  ATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKTGHHKTKGI 475
            +T LWH +LGH+S++GM  L ++ ++ G+    + LC++C+  KQ R++F T + + K +
Sbjct: 412  STLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKFSTSNSRGKVV 471

Query: 476  LDYVHSDV-RGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEVENQ 534
            L+ VHSDV + P   PS+ G +YFV+F DD+SR+ WVY +K KS+VFA FK +KA VE  
Sbjct: 472  LELVHSDVWQAPV--PSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKAFKARVELD 529

Query: 535  TGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKARCL 594
            +G+KIK  R+DNG EYT + F  FC++ GI+R F+V  TPQQNGVAERMNRTL E+ R +
Sbjct: 530  SGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRTLLERTRAM 589

Query: 595  RLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAYVHI 654
               A L K  WA  +N ACYLVNR+P  +++ K   E+WTG P+D SNL IF    Y   
Sbjct: 590  LRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPMEMWTGKPVDYSNLHIFGSIVYAMY 649

Query: 655  SSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQSDVTVVP 714
            ++++ +KLDPKS+ C  +GY  GVKGY+LWDP   KV++SRDV+F E   L++ +V    
Sbjct: 650  NAQEITKLDPKSRKCRFLGYADGVKGYRLWDPTAHKVVISRDVIFVE-DRLQRGEVD--D 706

Query: 715  DTEVENSSQDKIQVDIEETPVSPRQIVAQQQSEPGSDSGEVQDYTLVRDREPSRITPPVR 774
             TE E     +IQV+ E    S     A ++ EP S        T   DRE  R T    
Sbjct: 707  STEKEKPETTQIQVEEEFEQDSSEAEPAHEEPEPESSGAPT---TRQSDREKRRPTWHSD 763

Query: 775  YGFEDLAAYALLTSSGDPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKR 834
            Y  E   AY LLT  G+PST+ EA+ S +  +W +AM EE+E+L KN T +LV LP G++
Sbjct: 764  YVMEGNVAYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRK 823

Query: 835  VIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVA 894
             IG KWV+K K      + E+++A LV KGY+Q +GID++EIFSPVVR T++RVVLA+ A
Sbjct: 824  PIGNKWVFKIKRNGD-DQVERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCA 882

Query: 895  SMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYK 954
            + ++HLEQ+DVKT FLHG+LEE+IY+ QPEGF +  +  LVC+L +SLYGLKQ+PR WYK
Sbjct: 883  TFNLHLEQLDVKTAFLHGDLEEEIYMLQPEGFEDKENQNLVCRLNKSLYGLKQAPRCWYK 942

Query: 955  RFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKE 1014
            RFDS+++ +GY R + D C Y       +F+ LLLYVDDML+A  +   ++ELK +L +E
Sbjct: 943  RFDSFIMCLGYNRLNADPCAYFKRFGKDNFVILLLYVDDMLVAGPNKDHIDELKAQLARE 1002

Query: 1015 FDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLS 1074
            F+MKDLG A KILGM+IH+DRG +K+WLSQK+Y++ +LSRF M     +STPL  + K+S
Sbjct: 1003 FEMKDLGPANKILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKSISTPLPINLKVS 1062

Query: 1075 LEQSPKIDSEIEGMSKIPYA 1094
               SP  +     MS++PYA
Sbjct: 1063 SSMSPSNEEGRMEMSRVPYA 1082



 Score =  125 bits (315), Expect = 7e-27
 Identities = 61/115 (53%), Positives = 82/115 (71%)

Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
            GG + W S +Q+ VA STTEAEY+A  +A+KEA+WL  L++ELG +Q  V L CDSQSA+
Sbjct: 1172 GGAVSWVSKLQAVVATSTTEAEYVAATQASKEAIWLKMLLEELGHKQEFVSLFCDSQSAL 1231

Query: 1244 YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
            +L  N  +H+RTKHI V++H IRE +    + LQKIHT++N  D LTK +  DKF
Sbjct: 1232 HLARNPAFHSRTKHIRVQYHFIREKVKEGTVDLQKIHTADNVADFLTKIINVDKF 1286


>UniRef100_Q6L4V3 Putative polyprotein [Oryza sativa]
          Length = 1243

 Score =  863 bits (2230), Expect = 0.0
 Identities = 493/1123 (43%), Positives = 688/1123 (60%), Gaps = 71/1123 (6%)

Query: 5    KFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDEKPADIATVDW-NEMKE---KAAGL 60
            K+++   D    F LWQ   + +LAQ+ L  AL      D  T DW N+ K+   KA   
Sbjct: 5    KYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSG---FDKRTQDWSNDEKKRDRKAISY 61

Query: 61   ITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHV 120
            I L +S++++  +L   T   +W KLE + M+K   +K+  KQ+L+  K+Q+   +  H+
Sbjct: 62   IHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDESVMDHL 121

Query: 121  YAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLDSISSTLLPH 180
             AF  I+AD+  + V  D++D  +ILLCSLP SY +   T+ Y +D++TL  +       
Sbjct: 122  SAFKEIVADLESMEVKYDEDDLGLILLCSLPSSYANFRGTILYSRDTLTLKEVYDAFHAK 181

Query: 181  AQRRQSV-EEGGGSSGEGLFVKGGQDRGRGKGKAVD---SGKKKRSKSKDRKTTECYSCK 236
             + ++ V  EG  S  EGL V+G Q +   K ++ D   S  + R+KS+ R  + C  CK
Sbjct: 182  EKMKKMVTSEGSNSQAEGLVVRGRQQKKNTKNQSRDKSSSSYRGRTKSRGRYKS-CKYCK 240

Query: 237  QIGH-----WK-RDCPNRSGKSGNNSSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSG 290
            + GH     WK +D   R+GK              G   EE    V + + +DA +L + 
Sbjct: 241  RDGHDISECWKLQDKDKRTGK----------YIPKGKKEEEGKAAVVTDEKSDAELLVAY 290

Query: 291  CSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEV 350
                 T  ++WF ++++   G V +GDD PC + G+  V+I + DG +RTLS V+++  +
Sbjct: 291  AGCAQTSDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNL 350

Query: 351  MKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASV 410
             ++LISL                 IL+V+KG++ VM+    + N+Y L G TI+G+VA+V
Sbjct: 351  KRSLISL---------------YGILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAV 395

Query: 411  E---TDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKT 467
                ++ DAT LWHMRLGH+SE G+ EL KR +L G     +  C++C+ GK  RV+F T
Sbjct: 396  FDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNT 455

Query: 468  GHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLW 527
              H T+GILDYVHSD+ GP  + S  G RY +T  DD+SRKVW YF+K+K + F  FK W
Sbjct: 456  STHTTEGILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEW 515

Query: 528  KAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTL 587
            K  VE QT RK+K LR+DNG E+  K F  +C+  GI  H++   TPQQN VAERMNRT+
Sbjct: 516  KTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTI 575

Query: 588  TEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFW 647
              KARC+  NA L K  WA  ++ ACYL+NRSP  ++D K   EVW+G+P + S+LR+F 
Sbjct: 576  ISKARCMLSNAGLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFG 635

Query: 648  RPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQ 707
              AY H+   D  KL+P++  CI +GY  GVKGYKLW P  KKV++SR+VVF E  +L  
Sbjct: 636  CTAYAHV---DNGKLEPRAIKCIFLGYASGVKGYKLWCPETKKVVISRNVVFHESVILHD 692

Query: 708  SDVTVVPDTEVENSSQDKIQVDIEETPVS----PRQIVAQQQSEP---GSDSGEVQD--- 757
                  P T V   SQ+K  V +E    S     ++ VA  Q  P    SDS  V     
Sbjct: 693  K-----PSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPK 747

Query: 758  YTLVRDREPSRITPPVRYGFE-DLAAYAL-----LTSSGDPSTYHEAMAS*EKDKWMSAM 811
             ++ +D+    I PP RY  E  + AYAL     +  + +PSTY EA+ S + ++W++AM
Sbjct: 748  RSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAM 807

Query: 812  VEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGI 871
             +EMESL+KN T  LV+LP  K+ I CKW++K+K  ++  +  ++KA LV KGYSQ  GI
Sbjct: 808  HDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGI 867

Query: 872  DYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGD 931
            D++++FSPVV+H+SIR +L +VA  D  LEQM+VKT FLHG LEE IY+EQPEGF   G 
Sbjct: 868  DFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFVVPGK 927

Query: 932  GRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYV 991
              LVC+LK+SLYGLKQSPRQWYKRFDS+ML   +R  +YD CVY + + DGS I+LLLYV
Sbjct: 928  ENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNYDSCVY-LKVVDGSVIYLLLYV 986

Query: 992  DDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGV 1051
            DDMLIAA    ++ +LK +L  EF+MKDLGAAKKILGMEI ++R + KL+LSQK Y+E V
Sbjct: 987  DDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKGYIEKV 1046

Query: 1052 LSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPYA 1094
            L RF+M  A  VSTPL  HF+LS +  P  D +IE MS++PY+
Sbjct: 1047 LRRFNMHDAKPVSTPLAAHFRLSSDLCPLSDYDIEYMSRVPYS 1089



 Score = 79.3 bits (194), Expect = 7e-13
 Identities = 39/70 (55%), Positives = 52/70 (73%), Gaps = 1/70 (1%)

Query: 1180 LYSCGG-PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCD 1238
            +++ GG  + WK+S+Q+TVA+STTEAEYMA+ EA KEA+WL GL  EL      + + CD
Sbjct: 1174 VFTIGGCAVSWKASLQATVALSTTEAEYMAIFEACKEAIWLRGLYTELCGVTSCINIFCD 1233

Query: 1239 SQSAIYLTNN 1248
            SQSAIYLT +
Sbjct: 1234 SQSAIYLTKD 1243


>UniRef100_Q9SJT2 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  857 bits (2213), Expect = 0.0
 Identities = 526/1347 (39%), Positives = 760/1347 (56%), Gaps = 81/1347 (6%)

Query: 4    AKFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDE-----KPADIATVDWNEMKE--- 55
            A+ EV +FDG G++ +W+      L    L  AL++E     K A++   +  E +E   
Sbjct: 4    ARIEVEKFDGRGDYTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEEEEKEEVLR 63

Query: 56   ---------KAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLY 106
                     KA   I L V+D V+  I    +   +   L+ LYMSK   N+++ KQ+LY
Sbjct: 64   RELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLY 123

Query: 107  SLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKD 166
            S KM E   ++ ++  F  I+AD+    V V DED+AI+LL SLP  +D L  TL YG  
Sbjct: 124  SFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLG 183

Query: 167  SITL--DSISSTLLPHAQRRQSVEEGGGSSGEGLFVKGGQD-RGRGKGKAVDSGKKKRSK 223
             +TL  D + + +        S ++      EGLFVK   + RGR + +  ++  KK S+
Sbjct: 184  RVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKK-SR 242

Query: 224  SKDRKTTECYSCKQIGHWKRDCPNRSGKSGNNSSSANVVQSDGSCSEEDLLCVSSVKCTD 283
            SK R    C+ C              G+S N SS  N  +++G    E  L  + +   D
Sbjct: 243  SKSRSKKGCWIC--------------GESSNGSS--NYSEANGLYVSE-ALSSTDIHLED 285

Query: 284  AWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQ 343
             WV+D+GCSYHMT  REWF        G V +G+     ++G+  +++  + G V  L+ 
Sbjct: 286  EWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTN 345

Query: 344  VRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTI 403
            VRY+ E+ +NL+SLGT  ++GYSFK E     L +  G   ++  +R    +Y L    +
Sbjct: 346  VRYIPEMDRNLLSLGTFEKSGYSFKLENGT--LSIIAGDSVLLTVRRCY-TLYLLQWRPV 402

Query: 404  MGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRV 463
              +  SV    D T LWH RLGH+S++ M  L K+ +L   +   +  C+ C+ GK  R+
Sbjct: 403  TEESLSVVKRQDDTILWHRRLGHMSQKNMDLLLKKGLLDKKKVSKLETCEDCIYGKAKRI 462

Query: 464  RFKTGHHKTKGILDYVHSDVRGPTKEP-SV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFA 522
             F    H T+  L+YVHSD+ G    P S+   +YF++F DD++RKV +YF+K K E F 
Sbjct: 463  GFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKDEAFD 522

Query: 523  KFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAER 582
            KF  W   VENQT ++IK LR+DNG E+ +++F  FC + GI  H +   TPQQNGVAER
Sbjct: 523  KFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAER 582

Query: 583  MNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSN 642
            MNRTL EK R +  ++ L K  WA   +    L+N++P ++L+ +V ++ W+G     S 
Sbjct: 583  MNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSY 642

Query: 643  LRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE* 702
            LR F   A+VH    D  KL+P++K  I++GY  GVKGYK+W   +KK +VSR+V+F E 
Sbjct: 643  LRRFGCIAFVHT---DDGKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRNVIFQEN 699

Query: 703  SMLK---QSDVTVVPDTEVENSSQDKIQVDIEE--------------TPVSPRQIVAQQQ 745
            +  K   QS      + E   SS   + +D EE              +P +P     Q  
Sbjct: 700  ASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPSPATTQTY 759

Query: 746  SEP-GSDSGEVQD---YTLVRDREPSRITPPVRYGFEDLAAYALLTSSG----DPSTYHE 797
            SE   S++  +Q    Y LVRDR+   I  PVR+  ED  A AL T+      +P+ Y E
Sbjct: 760  SEGVNSETDIIQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGEIEPADYSE 819

Query: 798  AMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFK 857
            A  S   +KW  AM EEMES  KN T  +V+ P  ++VIG +W+YK KL +   E  +FK
Sbjct: 820  AKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFK 879

Query: 858  AHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQ 917
            A LV KGY+Q KGIDY EIF+PVV+H SIR+++++VA  D+ LEQ+DVKT FLHG L+E+
Sbjct: 880  ARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDVKTAFLHGELKEK 939

Query: 918  IYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVM 977
            IY+  PEG+ E      VC L +SLYGLKQ+P+QW ++F++YM  IG+ R  YD C Y+ 
Sbjct: 940  IYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGFIRSLYDSCAYIK 999

Query: 978  SLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGA 1037
             L DGS ++LLLYVDDML+AA +  D+++LK +L + FDMKDLGAAK+ILGMEI ++R  
Sbjct: 1000 ELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKRILGMEIIRNREE 1059

Query: 1038 KKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPY--AV 1095
              LWLSQ  Y+  +L  ++M+++ HV TPL  H K+      K + + + M  IPY  AV
Sbjct: 1060 NTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYMKSIPYSSAV 1119

Query: 1096 QLVV*CMLWFALDQIWHKQLVKCQVHVQAREAALGSSQVDPKILEGYNGSRYHV*QGARC 1155
              ++  M+    D  +   ++   +   ARE  LG   V  + ++G  G++    + +  
Sbjct: 1120 GSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWV-LRYIKGSLGTKLQYKRSSDF 1178

Query: 1156 CSISCGIC----GLCR*SR**KVYNRICLYSCGGPICWKSSVQSTVAMSTTEAEYMAVAE 1211
              +  G C      C+  R  +    +     G  I WKS  Q  VA+STTEAEYM++ E
Sbjct: 1179 KVV--GYCDADHAACKDRR--RSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSLTE 1234

Query: 1212 AAKEALWLTGLVKELGVEQGGVQLHCDSQSAIYLTNNQVYHARTKHIDVRFHKIRELLAS 1271
            A KEA+W+ GL+KE G EQ  V++ CDSQSAI L+ N V+H RTKHIDVR+  IR+++A+
Sbjct: 1235 AVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKNNVHHERTKHIDVRYQYIRDIIAN 1294

Query: 1272 RQILLQKIHTSENTTDKLTKPVTSDKF 1298
                + KI T +N  D  TK V  +KF
Sbjct: 1295 GDGDVVKIDTEKNPADIFTKIVPVNKF 1321


>UniRef100_Q9ZPU5 Putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  855 bits (2208), Expect = 0.0
 Identities = 522/1323 (39%), Positives = 736/1323 (55%), Gaps = 97/1323 (7%)

Query: 41   KPADIATVDWNEMKEKAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLF 100
            K  D   V   E  +KA  +I L V+D V+  I    T  + W+ L+ L+M ++  ++++
Sbjct: 33   KKRDADEVARLERCDKAKNVIFLNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVY 92

Query: 101  AKQRLYSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTT 160
             +   Y+ KMQE   +  ++  F  I+AD+  L + V DE +AI+LL SLP  YD LV T
Sbjct: 93   TQLSFYTFKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVET 152

Query: 161  LTYG--KDSITLDSISSTLLPHAQRRQSVEEGGGSSGEGLFVKGGQDRGRGKGKAVDSGK 218
            + Y   ++ + LD +   ++    + + + +      EG F +G  D G+   +      
Sbjct: 153  MKYSNSREKLRLDDV---MVAARDKERELSQNNRPVVEGHFARGRPD-GKNNNQGNKGKN 208

Query: 219  KKRSKSKDRKTTECYSCKQIGHWKRDC-----PNRSGKSGNNSSSANVVQSDGS------ 267
            + RSKS D K   C+ C + GH+K+ C      N+S + G+++  +++ +S  +      
Sbjct: 209  RSRSKSADGKRV-CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMV 267

Query: 268  --CSEEDLLCVSSVKCTDAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKG 325
               ++E L+   S+   + WVLD+GCS+HMT  ++WF  FK    GYV +G+D    +KG
Sbjct: 268  LLATDETLVVTDSI--ANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKG 325

Query: 326  MRQVKIALDDGGVRTLSQVRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTV 385
            +  +KI   DG    L+ VRY+  + +NLISLGTL + G  FKS++   IL++ KG  T+
Sbjct: 326  IGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDG--ILKIVKGCSTI 383

Query: 386  MRAKRTAGNIYKLLGGTIMGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVR 445
            ++ ++    +Y L G T  G+  S     D T LWH RLGH+S++GM  L K+  L+   
Sbjct: 384  LKGQKR-DTLYILDGVTEEGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREV 442

Query: 446  SCIIGLCKYCVLGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV*G-FRYFVTFTDD 504
               +  C+ CV GKQ RV F    H TK  L YVHSD+ G    P+  G  +YF++F DD
Sbjct: 443  IKELEFCEDCVYGKQHRVSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDD 502

Query: 505  FSRKVWVYFMKYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGI 564
            +SRKVW+YF++ K E F KF  WK  VENQ+ RK+K LR+DNG EY +  F  FC+E GI
Sbjct: 503  YSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGI 562

Query: 565  QRHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASL 624
             RH +   TPQQNG+AER+NRT+ +K R +   + + K  WA   + A YL+NRSP  ++
Sbjct: 563  VRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPSTAI 622

Query: 625  DGKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLW 684
            +  + EE WTG   DLS+LR F   AY+H    D+ KL+P+SK  I   Y +GVKGYK+W
Sbjct: 623  NFDLPEEKWTGALPDLSSLRKFGCLAYIHA---DQGKLNPRSKKGIFTSYPEGVKGYKVW 679

Query: 685  DPVKKKVIVSRDVVFDE*SMLKQ--------------SDVTVVPD------TEVENSSQD 724
                KK ++SR+V+F E  M K                D+ V PD      T+   ++QD
Sbjct: 680  VLEDKKCVISRNVIFREQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGATQD 739

Query: 725  KI---QVDIEETPVSPRQIVAQQQSEPGSDSGEVQD---YTLVRDREPSRITPPVRYGFE 778
                 +      PV      +Q +     DS  V+D   Y LVRDR    I    +Y   
Sbjct: 740  NSNPSEATTSHNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNES 799

Query: 779  DLAAYALLTSSG---DPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRV 835
            ++  +A  +      +P +Y EA+   + +KW +AM EEM S+ KN T +LV  P   ++
Sbjct: 800  NMVGFAYYSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKL 859

Query: 836  IGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVAS 895
            IGC+WV+ +K  +   E  +F A LV KG++Q +G+DY+EIFSPVV+H SIR +L++V  
Sbjct: 860  IGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVH 919

Query: 896  MDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKR 955
             +M L+QMDVKT FLHG LEE+IY+ QPEGF        VC LKRSLYGLKQSPRQW  R
Sbjct: 920  YNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLR 979

Query: 956  FDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEF 1015
            FD +M  I Y R  YD CVY    +  ++I+LLLYVDDMLIA+ +  +VNELK  L +EF
Sbjct: 980  FDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREF 1039

Query: 1016 DMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSL 1075
            +MKDLG AKKILGMEI +DR A  L LSQ+ YV+ VL  F M  A  VSTPL  HFKL  
Sbjct: 1040 EMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKA 1099

Query: 1076 EQSPKIDSEIEGMSKIPYA--VQLVV*CMLWFALDQIW---------------HKQLVKC 1118
                + + + E M  +PYA  +  ++  M+    D  +               H Q VK 
Sbjct: 1100 ATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKW 1159

Query: 1119 QVHVQ--AREAALGSSQVDPKILEGYNGSRYHV*QGARCCSISCGICGLCR*SR**KVYN 1176
             +       +  L   + +  +L GY  S Y      R       I G            
Sbjct: 1160 VLRYMRGTEKKKLCFRKQEDFLLRGYCDSDYGSNFDTR-----RSITGY----------- 1203

Query: 1177 RICLYSCGG-PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQL 1235
               +++ GG  I WKS +Q  VA+S+TEAEYMA+ EA KEALWL G   ELG  Q  V++
Sbjct: 1204 ---VFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEV 1260

Query: 1236 HCDSQSAIYLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTS 1295
            H DSQSAI L  N V+H RTKHID+R H IR+++ +  I + KI T  N  +  TK V  
Sbjct: 1261 HSDSQSAITLAKNSVHHERTKHIDIRLHFIRDIICAGLIKVVKIATECNPANIFTKTVPL 1320

Query: 1296 DKF 1298
             KF
Sbjct: 1321 AKF 1323


>UniRef100_P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Contains: Protease (EC 3.4.23.-); Reverse transcriptase
            (EC 2.7.7.49); Endonuclease] [Nicotiana tabacum]
          Length = 1328

 Score =  853 bits (2204), Expect = 0.0
 Identities = 478/1129 (42%), Positives = 679/1129 (59%), Gaps = 56/1129 (4%)

Query: 3    GAKFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALR--DEKPADIATVDWNEMKEKAAGL 60
            G K+EV +F+G   F  WQR  +DLL Q+ L K L    +KP  +   DW ++ E+AA  
Sbjct: 3    GVKYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASA 62

Query: 61   ITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHV 120
            I L +SDDV+N+I+D  T + +W +LESLYMSKT  NKL+ K++LY+L M EG +  +H+
Sbjct: 63   IRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHL 122

Query: 121  YAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLDSISSTLLPH 180
              FN ++  +  LGV +++EDKAI+LL SLP SYD+L TT+ +GK +I L  ++S LL +
Sbjct: 123  NVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLN 182

Query: 181  AQRRQSVEEGGGSSGEGLFVKG-GQDRGRGKGKAVDSGKKKRSKSKDR-KTTECYSCKQI 238
             + R+  E    + G+ L  +G G+   R       SG + +SK++ + +   CY+C Q 
Sbjct: 183  EKMRKKPE----NQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQP 238

Query: 239  GHWKRDCPN-RSGK---SG--NNSSSANVVQSDGSC-----SEEDLLCVSSVKCTDAWVL 287
            GH+KRDCPN R GK   SG  N+ ++A +VQ++ +       EE+ + +S  +    WV+
Sbjct: 239  GHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPE--SEWVV 296

Query: 288  DSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYV 347
            D+  S+H T  R+ F  + +GD G V +G+     I G+  + I  + G    L  VR+V
Sbjct: 297  DTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHV 356

Query: 348  LEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDV 407
             ++  NLIS   L  +GY       +   R++KG++ + +     G +Y+       G++
Sbjct: 357  PDLRMNLISGIALDRDGYESYFANQK--WRLTKGSLVIAKGV-ARGTLYRTNAEICQGEL 413

Query: 408  ASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKT 467
             + + D+ +  LWH R+GH+SE+G+  L K++++   +   +  C YC+ GKQ RV F+T
Sbjct: 414  NAAQ-DEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQT 472

Query: 468  GHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLW 527
               +   ILD V+SDV GP +  S+ G +YFVTF DD SRK+WVY +K K +VF  F+ +
Sbjct: 473  SSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKF 532

Query: 528  KAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTL 587
             A VE +TGRK+K LRSDNG EYT + F  +C  +GI+   +V  TPQ NGVAERMNRT+
Sbjct: 533  HALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTI 592

Query: 588  TEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFW 647
             EK R +   A L K  W   +  ACYL+NRSP   L  ++ E VWT   +  S+L++F 
Sbjct: 593  VEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFG 652

Query: 648  RPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQ 707
              A+ H+  E R+KLD KS  CI IGY     GY+LWDPVKKKVI SRDVVF E  +   
Sbjct: 653  CRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTA 712

Query: 708  SDVT------------VVPDTEVENSSQDKIQVDIEETPVSPRQIVAQ-QQSEPGSD--- 751
            +D++             +P T    +S +    ++ E    P +++ Q +Q + G +   
Sbjct: 713  ADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVE 772

Query: 752  ---SGEVQDYTLVRDREP---SRITPPVRYGFEDLAAYALLTSSGDPSTYHEAMAS*EKD 805
                GE Q   L R   P   SR  P           Y L++   +P +  E ++  EK+
Sbjct: 773  HPTQGEEQHQPLRRSERPRVESRRYPSTE--------YVLISDDREPESLKEVLSHPEKN 824

Query: 806  KWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGY 865
            + M AM EEMESL+KN T  LV+LP GKR + CKWV+K K     K   ++KA LV KG+
Sbjct: 825  QLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCK-LVRYKARLVVKGF 883

Query: 866  SQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEG 925
             Q KGID+DEIFSPVV+ TSIR +L+L AS+D+ +EQ+DVKT FLHG+LEE+IY+EQPEG
Sbjct: 884  EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

Query: 926  FSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFI 985
            F   G   +VCKL +SLYGLKQ+PRQWY +FDS+M    Y +   D CVY     + +FI
Sbjct: 944  FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFI 1003

Query: 986  FLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQK 1045
             LLLYVDDMLI       + +LK  L K FDMKDLG A++ILGM+I ++R ++KLWLSQ+
Sbjct: 1004 ILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQE 1063

Query: 1046 SYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPYA 1094
             Y+E VL RF+M  A  VSTPL  H KLS +  P    E   M+K+PY+
Sbjct: 1064 KYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYS 1112



 Score =  125 bits (315), Expect = 7e-27
 Identities = 61/115 (53%), Positives = 80/115 (69%)

Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
            GG I W+S +Q  VA+STTEAEY+A  E  KE +WL   ++ELG+ Q    ++CDSQSAI
Sbjct: 1202 GGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSAI 1261

Query: 1244 YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
             L+ N +YHARTKHIDVR+H IRE++    + + KI T+EN  D LTK V  +KF
Sbjct: 1262 DLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1316


>UniRef100_Q9SHR5 F28L22.3 protein [Arabidopsis thaliana]
          Length = 1356

 Score =  845 bits (2182), Expect = 0.0
 Identities = 516/1382 (37%), Positives = 754/1382 (54%), Gaps = 133/1382 (9%)

Query: 5    KFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRDEKPADIATVDWNEMK---------- 54
            + E+  F+G  +F LW+   +  L    L+  L D        +  +E K          
Sbjct: 7    RVEIKVFNGDRDFSLWKIRIQAQLGVLGLKDTLTDFSLTKTVPLTKSEAKQESGDGESSG 66

Query: 55   -------------EKAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFA 101
                         E+A  +I   +SD V+  +    T  D+W  L   YM  +  N+++ 
Sbjct: 67   TKEVPDPVKIEQSEQAKNIIINHISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYT 126

Query: 102  KQRLYSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTL 161
            + +LYS KM     +  +V  F  I+A++  L + VD+E +AI++L SLP S+  L  TL
Sbjct: 127  QLKLYSFKMVSTMTIDQNVDEFLRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTL 186

Query: 162  TYGKDSITLDSISSTLLPHAQRRQSVEEGGGSSGEGL----------FVKGGQDRGRGKG 211
             YG  ++T+  ++S+    +  R+  E      G+             V+  Q  G+GKG
Sbjct: 187  KYGNKTLTVQDVTSSA--KSLERELAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKG 244

Query: 212  KAVDSGKKKRSKSKDRKTTECYSCKQIGHWKRDCPNRSGK-SGNNSSSANVVQSDGSCSE 270
                     RS+S  +    C+ CK+ GH K+DC +R  K        A V+      SE
Sbjct: 245  ---------RSRSNSKTKVPCWYCKKEGHVKKDCYSRKKKMESEGQGEAGVITEKLVFSE 295

Query: 271  EDLLCVSSVKCTDAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVK 330
               L V+     D W+LDSGC+ HMT  R+WF SF+      + LGDD     +G   ++
Sbjct: 296  A--LSVNEQMVKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIR 353

Query: 331  IALDDGGVRTLSQVRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKR 390
            I    G ++ L  V+YV  + +NLIS GTL + GY  +  E +  +R  K   T +R   
Sbjct: 354  IDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGK--VRYFKNNKTALRGSL 411

Query: 391  TAGNIYKLLGGTIMGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIG 450
            + G +Y L G T+M ++ + ETD   T LWH RLGH+S   +  L  + ++       + 
Sbjct: 412  SNG-LYVLDGSTVMSELCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELE 470

Query: 451  LCKYCVLGKQCRVRFKTGHHKTKGILDYVHSDVRG-PTKEPSV*GFRYFVTFTDDFSRKV 509
             C++CV+GK  +V F  G H ++  L YVH+D+ G P   PS+ G +YF++  DD +RKV
Sbjct: 471  FCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKV 530

Query: 510  WVYFMKYKSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFS 569
            W+YF+K K E F KF  WK+ VENQ  +K+K LR+DNG E+ +  F  +C+E+GI+RH +
Sbjct: 531  WLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRT 590

Query: 570  VRKTPQQNGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVA 629
               TPQQNGVAERMNRT+ EK RCL   + + +  WA     A YL+NRSP ++++  V 
Sbjct: 591  CTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVP 650

Query: 630  EEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKK 689
            EE+W        +LR F   AYVH   +D+ KL P++     +GY  G KGYK+W   ++
Sbjct: 651  EEMWLNRKPGYKHLRKFGSIAYVH---QDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEE 707

Query: 690  KVIVSRDVVFDE*SMLKQSDVTVVPD-----TEVENSSQDKIQVDIEETPVSPRQIVAQQ 744
            K ++SR+VVF E  + +  D+ V  D      + E +S +  Q    E   S   I  Q 
Sbjct: 708  KCVISRNVVFQESVVYR--DLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQS 765

Query: 745  QSEP------GSDSGEVQDYT----------------LVRDREPSRITPPVRYGFEDLAA 782
             SEP       SDS E  +Y+                L RDR    I PP R+  E    
Sbjct: 766  DSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVT 825

Query: 783  YALLTSSG----DPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGC 838
            +AL+        +P +Y EAM S + +KW  A  +EM+SL KN T +LV  P  +++IGC
Sbjct: 826  FALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGC 885

Query: 839  KWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDM 898
            +W++K K  +   E  +FKA LV KGY+Q +G+DY EIF+PVV+H SIR++++LV   D+
Sbjct: 886  RWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDL 945

Query: 899  HLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDS 958
             LEQMDVKTTFLHG+LEE++Y+EQPEGF        VC+LK+SLYGLKQSPRQW KRFD 
Sbjct: 946  ELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDR 1005

Query: 959  YMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMK 1018
            +M    + R ++D CVYV  + +  FI+LLLYVDDMLIA     ++N +K +L  EF+MK
Sbjct: 1006 FMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMK 1065

Query: 1019 DLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSL--E 1076
            D+G A +ILG++I++DR    L LSQ+ Y+  VL RF+MS A   + P+  HFKL+   E
Sbjct: 1066 DMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLAAVRE 1125

Query: 1077 QSPKIDSEIEGMSKIPY--AVQLVV*CMLWFALDQIW---------------HKQLVKCQ 1119
            +   +D+++     +PY  AV  ++  ML    D  +               H + VK  
Sbjct: 1126 EDECVDTDV-----VPYSSAVGSIMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWV 1180

Query: 1120 VHV--QAREAALGSSQVDPKILEGYNGSRYHV*QGARCCSISCGICGLCR*SR**KVYNR 1177
            +     A++  L  ++     + GY  S Y     A        I G             
Sbjct: 1181 MRYLKGAQDLNLVFTKEKDFTVTGYCDSNY-----AADLDRRRSISGY------------ 1223

Query: 1178 ICLYSCGG-PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLH 1236
              +++ GG  + WK+S+Q  VAMSTTEAEY+A+AEAAKEA+W+ GL++++G++Q  V++ 
Sbjct: 1224 --VFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIW 1281

Query: 1237 CDSQSAIYLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSD 1296
            CDSQSAI L+ N VYH RTKHIDVRF+ IR+++ S  + + KIHTS N  D LTK +  +
Sbjct: 1282 CDSQSAICLSKNSVYHERTKHIDVRFNYIRDVVESGDVDVLKIHTSRNPVDALTKCIPVN 1341

Query: 1297 KF 1298
            KF
Sbjct: 1342 KF 1343


>UniRef100_Q9AU17 Polyprotein-like [Lycopersicon chilense]
          Length = 1328

 Score =  811 bits (2096), Expect = 0.0
 Identities = 468/1129 (41%), Positives = 655/1129 (57%), Gaps = 55/1129 (4%)

Query: 3    GAKFEVTRFDGTGN-FGLWQRMAKDLLAQKSLQKAL--RDEKPADIATVDWNEMKEKAAG 59
            G K+EV +F+G    F +WQR  KDLL Q+ L KAL  + +KP  +   DW E+ EKAA 
Sbjct: 3    GVKYEVAKFNGDKPVFSMWQRRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAAS 62

Query: 60   LITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAH 119
             I L ++DDV+N+I+D  +   +W KLE+LYMSKT  NKL+ K++LY+L M EG +  +H
Sbjct: 63   AIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSH 122

Query: 120  VYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDSITLDSISSTLLP 179
            +   N ++  +  LGV +++EDK I+LL SLP SYD L TT+ +GKDSI L  ++S LL 
Sbjct: 123  LNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLL 182

Query: 180  HAQRRQSVEEGG--------GSSGEGLFVKGGQDRGRGKGKAVDSGKKKRSKSKDRKTTE 231
            + + R+  E  G        G S +      G+   RGK K        RSKSK R    
Sbjct: 183  NEKMRKKPENHGQVFITESRGRSYQRSSSNYGRSGARGKSKV-------RSKSKARN--- 232

Query: 232  CYSCKQIGHWKRDCPN-------RSGKSGNNSSSANVVQSDGSCS--EEDLLCVSSVKCT 282
            CY+C Q GH+KRDCPN        SG+  +++++A V  +D       E+  C+      
Sbjct: 233  CYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTE 292

Query: 283  DAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLS 342
              WV+D+  SYH T  R+ F  + +GD G V +G+     I G+  +    + G    L 
Sbjct: 293  SEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLK 352

Query: 343  QVRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGT 402
             VR+V ++  NLIS   L ++GY       +   R++KGA+ + +     G +Y+     
Sbjct: 353  DVRHVPDLRMNLISGIALDQDGYENYFANQK--WRLTKGALVIAKGV-ARGTLYRTNAEI 409

Query: 403  IMGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCR 462
              G++ +   ++ A  LWH R+GH SE+G+  L K++++   +   I  C Y + GKQ R
Sbjct: 410  CQGELNAAHEENSAD-LWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHR 468

Query: 463  VRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFA 522
            V F+T   +   ILD V+SDV GP +  S+ G +YFVTF DD SRK+WVY  + K +VF 
Sbjct: 469  VSFQTSSERKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYIFRAKDQVFQ 528

Query: 523  KFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAER 582
             F+ + A VE +TGRK K LR+DNG EYT + F  +C  +GI+   +V  TPQ NGVAER
Sbjct: 529  VFQKFHALVERETGRKRKRLRTDNGGEYTSREFEEYCSNHGIRHEKTVPGTPQHNGVAER 588

Query: 583  MNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSN 642
            MNRT+ EK R +   A L K  W   +  ACYL+NRSP   L+  + E VWT   +  S+
Sbjct: 589  MNRTIVEKVRSMLRMAKLPKTFWGEAVRTACYLINRSPSVPLEFDIPERVWTNKEMSYSH 648

Query: 643  LRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE* 702
            L++F   A+ H+  E R+KLD KS  CI IGY     GY+LWD VKKKVI SRDV+F E 
Sbjct: 649  LKVFGCKAFAHVPKEQRTKLDDKSVPCIFIGYGDEEFGYRLWDLVKKKVIRSRDVIFRES 708

Query: 703  SMLKQSDVT--------------VVPDTEVENSSQDKIQVDIEETPVSPRQIVAQQQSEP 748
             +   +D++               +P +    +S +    ++ E    P +IV  +Q E 
Sbjct: 709  EVGTAADLSEKAKKKNGIIPNLVTIPSSSNHPTSAESTIDEVVEQEEQPDEIV--EQGEQ 766

Query: 749  GSDSGEVQDYTLVRDREPSRITPPVRYGFEDL--AAYALLTSSGDPSTYHEAMAS*EKDK 806
              D+ E  +Y      +P R +   R        + Y L+   G+P    E ++  EK +
Sbjct: 767  LGDNTEQMEYPEEEQSQPLRRSERQRVESTKYPSSEYVLIKYEGEPENLKEVLSHPEKSQ 826

Query: 807  WMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYS 866
            WM AM EEM SL+KN T  LV+LP GKR + CKWV+K K     K   ++KA LV KG+ 
Sbjct: 827  WMKAMHEEMGSLQKNGTYQLVELPKGKRPLKCKWVFKLKKDGNGK-LVRYKARLVVKGFE 885

Query: 867  QHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGF 926
            Q KGID+DEIFSPVV+ TSIR +L++ AS+D+ +EQ+DVKT FLHG+LEE+IY+EQ EGF
Sbjct: 886  QKKGIDFDEIFSPVVKMTSIRTILSIAASLDLEVEQLDVKTAFLHGDLEEEIYMEQGEGF 945

Query: 927  SETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIF 986
              +G   +VCKL +SLYGLKQ+PRQWYK+FDS+M    YR      CVY     D +FI 
Sbjct: 946  EVSGKKHMVCKLNKSLYGLKQAPRQWYKKFDSFMKSQTYRNTYSHPCVYFKRFSDKNFII 1005

Query: 987  LLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKS 1046
            LLLY D MLI       + +L+    K FDMKDLG AK+ILGM+I ++   KKL LS + 
Sbjct: 1006 LLLYTDYMLIVGKDKELIAKLRKDFSKSFDMKDLGPAKQILGMKIAREE-QKKLGLSHEK 1064

Query: 1047 YVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSP-KIDSEIEGMSKIPYA 1094
            Y+E VL RF+M  A  +STPL ++ KL+ +  P K   E   M+K+PY+
Sbjct: 1065 YIERVLERFNMKSAKPISTPLVSYLKLTKQMFPTKKKGEKGDMAKVPYS 1113



 Score =  112 bits (279), Expect = 1e-22
 Identities = 55/115 (47%), Positives = 78/115 (67%)

Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
            GG I W+S +Q  VA+STTEA+Y+A  E  KE LWL   ++E G+ Q    ++C+SQSA+
Sbjct: 1202 GGDISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHGLHQKEYVVYCESQSAM 1261

Query: 1244 YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKF 1298
             L+   +YHA TKHID+R+H IRE++    + + KI TSEN  D +TK V ++KF
Sbjct: 1262 DLSKKAMYHATTKHIDMRYHWIREMVDDGSLQVVKIPTSENPADMVTKVVQNEKF 1316


>UniRef100_O81903 Putative transposable element [Arabidopsis thaliana]
          Length = 1308

 Score =  795 bits (2054), Expect = 0.0
 Identities = 488/1347 (36%), Positives = 741/1347 (54%), Gaps = 108/1347 (8%)

Query: 5    KFEVTRFDGTGNFGLWQRMAKDLLAQKSLQKALRD------------EKPADIATVDWNE 52
            K E+  F+G  +F LW+   +  L    L+ AL D            EK    +  D  +
Sbjct: 6    KVEIKTFNGDRDFSLWKIRIEAQLGVLGLKPALSDFTLTKTILVVKSEKKESESEDDETD 65

Query: 53   MK--EKAAGLITLCVSDD----VMNHILDLTTLK--------DVWDKLESLYMSKTPMNK 98
             K  E+    I    SD     ++NHI D   LK        ++W  L  L+M  +  N+
Sbjct: 66   SKKTEEVPDPIKFEQSDQAKNFIINHITDTVLLKVQHCVTAAELWATLNKLFMETSLPNR 125

Query: 99   LFAKQRLYSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLV 158
            ++ + RLYS KM +   +  +   F  I+A++  L + V +E +AI++L SLP SY  L 
Sbjct: 126  IYTQLRLYSFKMVDNLSIDQNTDEFLRIVAELGSLQIQVGEEVQAILILNSLPPSYIQLK 185

Query: 159  TTLTYGKDSITL-DSISSTLLPHAQRRQSVEEGGGSSGEGLFVKGGQDRGRGKGKAVDSG 217
             TL YG  ++++ D +SS      +  +  E     +   L+     +RGR + K     
Sbjct: 186  HTLKYGNKTLSVQDVVSSAKSLERELSEQKETIRAPASTALYTA---ERGRPQTKNTQGQ 242

Query: 218  KKKRSKSKDRKTTECYSCKQIGHWKRDCPNRSGKSGNNSSS-ANVVQSDGSCSEEDLLCV 276
             K R +S  +    C+ CK+ GH K+DC     K  N     A V+      SE   L +
Sbjct: 243  GKGRGRSNSKSRLTCWFCKKEGHVKKDCYAGKRKLENEGQGKAGVITEKLVYSEA--LSM 300

Query: 277  SSVKCTDAWVLDSGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDG 336
               +  D WV+DSGC+YHMT   +WF+ F   +   + LGDD     KG   VK+    G
Sbjct: 301  YDQEAKDKWVIDSGCTYHMTSRMDWFSEFNENETTMILLGDDHTVESKGSGTVKVNTHGG 360

Query: 337  GVRTLSQVRYVLEVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIY 396
             +R L  VR+V  + +NLIS GTL + GY  +  + +  +R  K   T +      G +Y
Sbjct: 361  SIRVLKNVRFVPNLRRNLISTGTLDKLGYKHEGGDGK--VRFYKENKTALCGNLVNG-LY 417

Query: 397  KLLGGTIMGDVASVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCV 456
             L G T++ +  +VE  ++ T+LWH RLGH+S   M  L ++ +L+      +  C+ CV
Sbjct: 418  VLDGHTVVNENCNVEGSNEKTELWHCRLGHMSLNNMKILAEKGLLEKKDIKELSFCENCV 477

Query: 457  LGKQCRVRFKTGHHKTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKY 516
            +GK  ++ F  G H T  +L Y+H+D+ G          +YF++  DD SRKVW+ F+K 
Sbjct: 478  MGKSKKLSFNVGKHITDEVLGYIHADLWGK---------QYFLSIIDDKSRKVWLMFLKT 528

Query: 517  KSEVFAKFKLWKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQ 576
            K E F +F  WK  VENQ  +K+K LR+DNG E+ +  F  FC++NGI+RH +   TPQQ
Sbjct: 529  KDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNGIERHRTCTYTPQQ 588

Query: 577  NGVAERMNRTLTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGN 636
            NGVA+RMNRTL EK RCL   + L +  WA     A YLVNRSP +++D  V EE+W   
Sbjct: 589  NGVAKRMNRTLMEKVRCLLNESGLEEVFWAEAAATAAYLVNRSPASAVDHNVPEELWLDK 648

Query: 637  PIDLSNLRIFWRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRD 696
                 +LR F   AYVH+   D+ KL P++   + +GY +G KGYK+W   ++K ++SR+
Sbjct: 649  KPGYKHLRRFGCIAYVHL---DQGKLKPRALKGVFLGYPQGTKGYKVWLLDEEKCVISRN 705

Query: 697  VVFDE*SMLK------QSDVTVVPDTEVENSSQDKIQ----------VDIEETPVSPRQI 740
            +VF+E  + K      +  V  + D E  N  Q  ++          V IEE        
Sbjct: 706  IVFNENQVYKDIRESSEQSVKDISDLEGYNEFQVSVKEHGECSKTGGVTIEEIDQESDSE 765

Query: 741  VAQQQSEPGSDSGEVQDYTLVRDREPSRITPPVRYGFEDLAAYALLTS----SGDPSTYH 796
             +  Q EP   S ++ +Y   RDRE     PP +       A AL+ +    S +P  YH
Sbjct: 766  NSVTQ-EPLIASIDLSNYQSARDRERRAPNPPQKLADYTHFALALVMAEEIESEEPQCYH 824

Query: 797  EAMAS*EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKF 856
            +A       KW   M EE++SL KN T ++V+ P  ++VI C+W++K K  +   E +++
Sbjct: 825  DAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGVEAQRY 884

Query: 857  KAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEE 916
            KA LV +G++Q KGIDY+E+F+PVV+H SIR++++ V   DM LEQMDVKTTFLHG L++
Sbjct: 885  KARLVARGFTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDMELEQMDVKTTFLHGELDQ 944

Query: 917  QIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYV 976
             +Y+EQPEGF    +   VC LK+SLYGLKQ+PRQW K+F ++ML + + R ++D CVYV
Sbjct: 945  VLYMEQPEGFEVNPEKDQVCLLKKSLYGLKQAPRQWNKKFHAFMLSLQFARSEHDSCVYV 1004

Query: 977  MSLDDGSFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRG 1036
              ++ G F++LLLYVDDML+AA    ++++LK  L  +F+MKD+GAA +ILG++I ++R 
Sbjct: 1005 KEVNPGEFVYLLLYVDDMLLAAKSKSEISKLKEALSLKFEMKDMGAASRILGIDIIRNRK 1064

Query: 1037 AKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTNHFKLS--LEQSPKIDSEIEGMSKIPY- 1093
               L LSQ  YV+ V+ RF M+ A  VSTP+  HFKL+  +++   +D E+     +PY 
Sbjct: 1065 EGTLRLSQTRYVDKVIQRFRMADAKVVSTPMGAHFKLTSLIDEIGSVDPEV-----VPYS 1119

Query: 1094 -AVQLVV*CMLWFALDQIWHKQLVKCQVHVQAREAALGSSQVDPKILEGYNGSRYHV*QG 1152
             AV  V+  M+    D  +   LV       +R  +   + ++   ++GY  S +     
Sbjct: 1120 SAVGSVMYAMIGTIPDVAYAMGLV-------SRFMSRPGANLE---VQGYCDSDH----- 1164

Query: 1153 ARCCSISCGICGLCR*SR**KVYNRICLYSCGG-PICWKSSVQSTVAMSTTEAEYMAVAE 1211
            A        I G               +++ GG  + WKSS+Q  VA+S+T+AE++A+ E
Sbjct: 1165 AADLDKRRSISGY--------------VFTVGGNTVSWKSSLQHVVALSSTQAEFIALTE 1210

Query: 1212 AAKEALWLTGLVKELGVEQGGVQLHCDSQSAIYLTNNQVYHARTKHIDVRFHKIRELLAS 1271
            A KEA+W+ GL++++G++     + CDSQSAI L+ N  +H RTKH++V+F+ IR+++ +
Sbjct: 1211 AVKEAIWIRGLLEDMGLQPKPATVWCDSQSAICLSKNNAFHDRTKHVEVKFYFIRDIIEA 1270

Query: 1272 RQILLQKIHTSENTTDKLTKPVTSDKF 1298
             ++ ++KIHTS N  D LTK +   KF
Sbjct: 1271 GEVKVRKIHTSVNPADMLTKCIPVKKF 1297


>UniRef100_Q9ZRJ0 ORF [Nicotiana tabacum]
          Length = 1338

 Score =  782 bits (2020), Expect = 0.0
 Identities = 463/1132 (40%), Positives = 652/1132 (56%), Gaps = 69/1132 (6%)

Query: 7    EVTRFDGTGNFGLWQRMAKDLL-AQKSLQKALRDEKPADIATVDWNEMKEKAAGLITLCV 65
            ++   +GT N+ LW+   KDLL   K        +KP D +  DW     +  G I   V
Sbjct: 7    KMVNLNGT-NYHLWRNKMKDLLFVTKMHLPVFSSQKPEDKSDEDWEFEHNQVCGYIRQFV 65

Query: 66   SDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKLFAKQRLYSLKMQEGGDLQAHVYAFNN 125
             D+V NHI  +T  + +WDKLE LY SKT  NKLF   +L  +K  EG  +  H+     
Sbjct: 66   EDNVYNHISGVTHARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQG 125

Query: 126  ILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDS--ITLDSISSTLLPHAQR 183
            I+  ++ +G+  DDE  A+++L +LP S++ L  ++T    +  + ++++ S +L    R
Sbjct: 126  IVDQLSGMGIKFDDEVLALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNEEMR 185

Query: 184  RQSVEEGGGSSGEGLFVKGGQDRGRGKGKAVDSGKKKRSKSKDRKTTECYSCKQIGHWKR 243
            R+S     G+S     V     RGR + K+  +  K R KS      EC+ CK+ GH KR
Sbjct: 186  RRSQ----GTSSSQSEVLAVTTRGRSQNKSQSNRDKSRGKSNKFANVECHYCKKKGHIKR 241

Query: 244  DC--------PNRSGKSGNNSSSANVVQSDGSCS---EEDLLCVSSVKCTDAWVLDSGCS 292
             C         N+  K     SS +   S G  +   ++D++ +++ + T  WV+DSG +
Sbjct: 242  FCRQFQNDQKKNKGKKVKPEESSDDETNSFGEFNVVYDDDIINLTTQEMT--WVIDSGAT 299

Query: 293  YHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMK 352
             H T  RE F+S+  GD G V +G+     + G   V +   +G    L  VR+V ++  
Sbjct: 300  IHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLLLRDVRHVPDMRL 359

Query: 353  NLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASVET 412
            NLIS+  L E GY       +   +++KG++ V R  + +  +Y +   +I   V +V  
Sbjct: 360  NLISVDKLDEEGYCNTFHNGQ--WKLTKGSLMVARGTKQS-KLY-VTQASISQQVINVAE 415

Query: 413  DDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKT-GHHK 471
            +D   KLWH RLGH+SE+ M  L K+N L G+    +  C  C+ GKQ RV FK     +
Sbjct: 416  NDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQLKKCADCLAGKQNRVSFKRFPPSR 475

Query: 472  TKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEV 531
             + +LD VHSDV GP K+ S+ G RYFVTF DD SRK WVY +K K +VF  FK +   V
Sbjct: 476  RQNVLDLVHSDVCGPFKK-SLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLV 534

Query: 532  ENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKA 591
            E +TG+K+K +R+DNG EY  + F  +C+E+GI+  F+  KTPQ NG+AERMNRTL E+ 
Sbjct: 535  ERETGKKLKCIRTDNGGEYQGQ-FDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERT 593

Query: 592  RCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAY 651
            RCL  ++ L K  W   +  A Y++N SP   L  K  E++W G  I    LR+F   AY
Sbjct: 594  RCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAY 653

Query: 652  VHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQSDVT 711
            VH+  ++RSKLD K++ C+ IGY + + GYK +DPV+KK++ SRDVVF E       D T
Sbjct: 654  VHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVE-------DQT 706

Query: 712  VVPDTEVENSSQDKIQVDIEETPVSPRQI---VAQQQSE-PG-------------SDSGE 754
            +    +VE S+ D  + ++  T V PRQ+   V   Q E PG              D+G+
Sbjct: 707  IEDIDKVEKSTDDSAEFELPPTVV-PRQVGDDVQDNQPEAPGLPNEDELADTEGNEDNGD 765

Query: 755  VQDYTLVRDREPSRITPP------------VRYGFEDLAAYALLTSSGDPSTYHEAMAS* 802
                   + + P    PP             RY   +   Y LLT  G+P ++ EA+   
Sbjct: 766  DDADEEDQPQPPILNNPPYHTRSGRVVQQSTRYSPHE---YVLLTDGGEPDSFEEAIDDE 822

Query: 803  EKDKWMSAMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVT 862
             K+KW+ AM +E++SL +N+T  LV+LP GKR +  KWV+K K         +FKA LV 
Sbjct: 823  HKEKWIEAMQDEIKSLHENKTFELVKLPKGKRALKNKWVFKMKHDEH-NSLPRFKARLVV 881

Query: 863  KGYSQHKGIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQ 922
            KG++Q KGID+DEIFSPVV+ TSIR VL L AS+++ +EQMDVKT FLHG+LEE+IY+EQ
Sbjct: 882  KGFNQRKGIDFDEIFSPVVKMTSIRTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQ 941

Query: 923  PEGFSETGDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDG 982
            P+GF + G    VC+L++SLYGLKQ+PRQWYK+F+S M + GY++   D CV+     D 
Sbjct: 942  PDGFQQKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDD 1001

Query: 983  SFIFLLLYVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWL 1042
             FI LLLYVDDMLI   ++  +N LK +L K F MKDLG AK+ILGM I +DR AKKLWL
Sbjct: 1002 DFIILLLYVDDMLIVGRNVSRINSLKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWL 1061

Query: 1043 SQKSYVEGVLSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPYA 1094
            SQ+ Y+E VL RF+M K   VS PL NHF+LS +QSP  D E   M +IPYA
Sbjct: 1062 SQEKYIEKVLQRFNMEKTKAVSCPLANHFRLSTKQSPSTDDERRKMERIPYA 1113



 Score =  129 bits (324), Expect = 6e-28
 Identities = 60/117 (51%), Positives = 82/117 (69%)

Query: 1184 GGPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCDSQSAI 1243
            GG + W+S +Q  VA+STTEAE++A  EA KE +W+   + ELG  Q G QL CDSQSAI
Sbjct: 1203 GGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSAI 1262

Query: 1244 YLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKFMF 1300
            +L  N  +H+R+KHIDVR++ IR++L  + + L+KIHT EN +D LTK +   KF F
Sbjct: 1263 HLAKNASFHSRSKHIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLPKGKFEF 1319


>UniRef100_Q7XFG2 Putative retroelement [Oryza sativa]
          Length = 1225

 Score =  664 bits (1713), Expect = 0.0
 Identities = 388/928 (41%), Positives = 537/928 (57%), Gaps = 142/928 (15%)

Query: 204  QDRGRGKGKAVDSGKKKRS------KSKDR-KTTECYSCKQIGH-----WK-RDCPNRSG 250
            +DR R + K  +S  + +S      +SK R +   C  CK+ G+     WK +D   R+G
Sbjct: 201  RDRNRQQEKNTNSKSRDKSSSSYHGRSKSRGRYKSCKYCKRDGYDISKCWKLQDKDKRTG 260

Query: 251  K-----SGNNSSSANVVQSDGSCSEEDLLCVSSVKCTDAWVLDSGCSYHMTQHREWFNSF 305
            K            A VV  + S ++  +      + +D W+LD+ C+YHM  +R+WF ++
Sbjct: 261  KYVPKGKKEEEGKAAVVTDEKSDAKLLVAYAGCAQTSDQWILDTACTYHMCSNRDWFATY 320

Query: 306  KSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMKNLISLGTLHENGY 365
            ++   G V +GDD PC + G                                        
Sbjct: 321  EAVQGGTVLMGDDTPCEVAG---------------------------------------- 340

Query: 366  SFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASVE---TDDDATKLWHM 422
             +K      IL+V+KG++ VM+A   + N+Y L G TI+G+VA+V    ++ DAT LWHM
Sbjct: 341  -YKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHM 399

Query: 423  RLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKTGHHKTKGILDYVHSD 482
            RLGH+SE G+ EL KR +L G     +  C++C+ GK  RV+F T  H T+GILDYVHSD
Sbjct: 400  RLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSD 459

Query: 483  VRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEVENQTGRKIKYL 542
            + GP ++ S  G RY +T  DD+SRKVW YF+K+K + F  FK WK  VE QT RK+K L
Sbjct: 460  LWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKIL 519

Query: 543  RSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKARCLRLNACLSK 602
            R+DNG ++  K F  +C+  GI RH++V  TPQQNGVAERMNRT+  KARC+  NA L K
Sbjct: 520  RTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNAGLPK 579

Query: 603  CLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAYVHISSEDRSKL 662
              WA  ++ ACYL+NRSP  ++D K   +VW+G+P + S+LR+F   AY H+   D SKL
Sbjct: 580  QFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGSPANYSDLRVFGCIAYAHV---DNSKL 636

Query: 663  DPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SMLKQSDVTVVPDTEVENSS 722
            +P++  CI +GY  GVKGYKLW P  KKV++SR+VVF E  ML        P T V   S
Sbjct: 637  EPRAIKCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDK-----PSTNVPVES 691

Query: 723  QDKIQVDIEETPVS----PRQIVAQQQSEP---GSDSGEVQD---YTLVRDREPSRITPP 772
            Q+K  V +E    S     ++ VA     P    SDS  VQ    +++ +D+    I PP
Sbjct: 692  QEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSIVQQSPKHSIAKDKPKRNIKPP 751

Query: 773  VRYGFE-DLAAYAL-----LTSSGDPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NL 826
             RY  E ++ AYAL     +  + +PSTY +A+ S + ++W++AM +EMESL+KN T  L
Sbjct: 752  RRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWEL 811

Query: 827  VQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSI 886
            V+LP  K+ I CKW++K+K  ++  +  ++KA                         +SI
Sbjct: 812  VKLPKEKKPIRCKWIFKRKEGMSPSDEARYKA-------------------------SSI 846

Query: 887  RVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLK 946
            R +L++VA  D  LEQMDVKT FLHG LEE IY+EQPEGF   G   LVC+LK+SLYGLK
Sbjct: 847  RTLLSIVAMYDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLK 906

Query: 947  QSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNE 1006
            QSPRQWYKRFDS+ML   +RR +YD CVY + + DGS I+LLLYV+DMLIAA    ++ +
Sbjct: 907  QSPRQWYKRFDSFMLSQKFRRSNYDSCVY-LKVVDGSAIYLLLYVNDMLIAAKDKLEIAK 965

Query: 1007 LKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTP 1066
            LK +L  EF+MKDLGAAKKILGMEI ++R + KL+LSQK                     
Sbjct: 966  LKAQLSSEFEMKDLGAAKKILGMEITRERRSGKLYLSQK--------------------- 1004

Query: 1067 LTNHFKLSLEQSPKIDSEIEGMSKIPYA 1094
                     +  P+ D +IE MS++PY+
Sbjct: 1005 ---------DLCPQSDYDIEYMSRVPYS 1023



 Score =  104 bits (259), Expect = 2e-20
 Identities = 50/96 (52%), Positives = 72/96 (74%), Gaps = 1/96 (1%)

Query: 1180 LYSCGG-PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGGVQLHCD 1238
            +++ GG  + WK+S+Q+TVA+STT+AEYMA++EA KEA+WL GL  EL      + + CD
Sbjct: 1063 VFTIGGCAVSWKASLQATVALSTTKAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCD 1122

Query: 1239 SQSAIYLTNNQVYHARTKHIDVRFHKIRELLASRQI 1274
            SQSAI LT +Q++H RTK+IDVR+H IR ++A   +
Sbjct: 1123 SQSAICLTKDQMFHERTKYIDVRYHFIRGVIAEGDV 1158


>UniRef100_Q6L3N8 Putative gag-pol polyprotein [Solanum demissum]
          Length = 1333

 Score =  655 bits (1689), Expect = 0.0
 Identities = 448/1337 (33%), Positives = 671/1337 (49%), Gaps = 99/1337 (7%)

Query: 16   NFGLWQRMAKDLLAQKSLQKALRDEKPADIATVDWNEMKEKAAGLITL--CVSDDVMNHI 73
            N+  W    K L   + L   +    P   A       K  +  L T+   + D++   I
Sbjct: 21   NYQFWSLKMKTLFKSQELWDIVETGIPEGNANQMREHRKRDSKALFTIQQALDDEIFPRI 80

Query: 74   LDLTTLKDVWDKLESLYMS--KTPMNKLFAKQRLY-SLKMQEGGDLQAHVYAFNNILADM 130
              + T K  W+ L+  Y    K    KL   +R + +L M E   +Q ++   + I+  M
Sbjct: 81   SAVETSKQAWEILKQEYFGDDKVITVKLQTLRRDFETLFMNENESVQGYLSRTSAIVNRM 140

Query: 131  TRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGKDSIT--LDSISSTLLPHAQR----R 184
               G  +D++     +L SL   ++H+VT +   KD  T   D + S+LL H  R    R
Sbjct: 141  RSYGEKIDNQIVVSKVLRSLTTKFEHVVTAIEESKDLSTYSFDELMSSLLAHEDRLNRSR 200

Query: 185  QSVEE------------GGGSSGEGLFVKGGQDRGRGKGKAVDSGKKKRSKSKDRKTTEC 232
            + V+E            G   +  G     G  RGRG+G +     +     + +   +C
Sbjct: 201  EKVQEKAFQVKGEFSYKGKAENSAGRGHGRGNFRGRGRGGSGRGRNQVGEFRQYKSNIQC 260

Query: 233  YSCKQIGHWKRDCPNRSGKSGNNSSSANVVQSDGSCSEEDLLCVSSVKCTDA----WVLD 288
              CK+ GH + DC     K  +    AN  Q+     EE  L ++S + T++    W +D
Sbjct: 261  RYCKKFGHKEVDCWT---KQKDEQKDANFTQN---VEEESKLFMASSQITESANAVWFID 314

Query: 289  SGCSYHMTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVL 348
            SGCS HM+  +  F          V LGDDK   I+G   V+I    G V+ L  V+YV 
Sbjct: 315  SGCSNHMSSSKSLFRDLDESQKSEVRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVP 374

Query: 349  EVMKNLISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVA 408
             +  NL+S+G L  +GYS    +N   ++  +   T+ R   T   ++ L    + G+ A
Sbjct: 375  TLAHNLLSVGQLMTSGYSVVFYDNACDIKDKESGRTIARVPMTQNKMFPLDISNV-GNSA 433

Query: 409  SVETDDDATKLWHMRLGHLSERGMMELHKRNMLKGVRSCI-IGLCKYCVLGKQCRVRFKT 467
             V  + + T LWH+R GHL+   +  L +++M+ G+ +   + LC+ C+ GKQ R  F  
Sbjct: 434  LVVKEKNETNLWHLRYGHLNVNWLKLLVQKDMVIGLPNIKELDLCEGCIYGKQTRKSFPV 493

Query: 468  GHH-KTKGILDYVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKL 526
            G   +    L+ VH+D+ GP K  S+ G RYF+ FTDD+SR  WVYF+K+KSE F  FK 
Sbjct: 494  GKSWRATTCLELVHADLCGPMKMESLGGSRYFLMFTDDYSRFSWVYFLKFKSETFETFKK 553

Query: 527  WKAEVENQTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRT 586
            +KA VENQ+G KIK LR+D G E+   +F  FCEENGI+R  +   TP+QNGVAER NRT
Sbjct: 554  FKAFVENQSGNKIKSLRTDRGGEFLSNDFNLFCEENGIRRELTAPYTPEQNGVAERKNRT 613

Query: 587  LTEKARCLRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIF 646
            + E AR       L    W   +    Y +N SP   +      E W G    +S+LRIF
Sbjct: 614  VVEMARSSLKAKGLPDYFWGEAVATVVYFLNISPTKDVWNTTPLEAWNGKKPRVSHLRIF 673

Query: 647  WRPAYVHISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*---- 702
               AY  ++    SKLD KS  CI +GY+   K Y+L++P+  KVI+SR+VVF+E     
Sbjct: 674  GCIAYALVNFH--SKLDEKSTKCIFVGYSLQSKAYRLYNPISGKVIISRNVVFNEDVSWN 731

Query: 703  --SMLKQSDVTVVPDTEVE-----NSSQDKIQVDIEETPVSPRQIVAQQQSEPGSDSGEV 755
              S    S++ ++P  E       NS           +P++P   VA  +S        V
Sbjct: 732  FNSGNMMSNIQLLPTDEESAVDFGNSPNSSPVSSSVSSPIAPSTTVAPDESS-------V 784

Query: 756  QDYTLVRDREPSRITPPVRYGFEDLAAYALLTSSGDPSTYHEAMAS*EKDKWMSAMVEEM 815
            +   L R     +  P           +ALL S  DP  Y EA+   E+ +W +AM+EE+
Sbjct: 785  EPIPLRRSTREKKPNPKYSNTVNTSCQFALLVS--DPICYEEAV---EQSEWKNAMIEEI 839

Query: 816  ESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDE 875
            +++++N T  LV  P GK VIG KWV++ K        +K KA LV KGYSQ +G+D+DE
Sbjct: 840  QAIERNSTWELVDAPEGKNVIGLKWVFRTKYNAD-GSIQKHKARLVAKGYSQQQGVDFDE 898

Query: 876  IFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLV 935
             FSPV R  ++RVVLAL A + + + Q DVK+ FL+G+LEE++Y+ QP+GF  TG+   V
Sbjct: 899  TFSPVARFETVRVVLALAAQLHLPVYQFDVKSAFLNGDLEEEVYVSQPQGFMITGNENKV 958

Query: 936  CKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDML 995
             KL+++LYGLKQ+PR WY + DS+    G+RR D +  +Y+       F+ + LYVDDM+
Sbjct: 959  YKLRKALYGLKQAPRAWYSKIDSFFQGSGFRRSDNEPTLYLKKQGTDEFLLVCLYVDDMI 1018

Query: 996  IAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRF 1055
               +    VN+ K+ + + F+M DLG  K  LG+E+ +D+    +++SQK Y E +L +F
Sbjct: 1019 YIGSSKSLVNDFKSNMMRNFEMSDLGLLKYFLGLEVIQDKDG--IFISQKKYAEDLLKKF 1076

Query: 1056 DMSKANHVSTPLTNHFKL-----SLEQSPKIDSEIEG--------MSKIPYAVQLVV*CM 1102
             M      +TP+  + KL     + + +PK+   + G           I ++V  VV   
Sbjct: 1077 QMMNCEVATTPMNINEKLQRADGTEKANPKLFRSLVGGLNYLTHTRPDIAFSVS-VVSRF 1135

Query: 1103 LWFALDQIWHKQLVKCQVHVQAREAALGSSQVDPKILEGYNGSRYHV*QGARCCSISCGI 1162
            L     Q +       +      +  +  S+     L G+  S Y     A C       
Sbjct: 1136 LQSPTKQHFGAAKRVLRYVAGTTDFGIWYSKAPNFRLVGFTDSDY-----AGCLDDRKST 1190

Query: 1163 CGLCR*SR**KVYNRICLYSCG-GPICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTG 1221
             G C              +S G G + W S  Q TVA+ST+EAEY A + AA++ALWL  
Sbjct: 1191 SGSC--------------FSFGSGVVTWSSKKQETVALSTSEAEYTAASLAARQALWLRK 1236

Query: 1222 LVKELGVEQ-GGVQLHCDSQSAIYLTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIH 1280
            L+++   EQ    ++  DS+SAI +  N  +H RTKHIDV++H IR L+A  +I+L+   
Sbjct: 1237 LLEDFSYEQKESTEIFSDSKSAIAMAKNPSFHGRTKHIDVQYHFIRTLVADGRIVLKFCS 1296

Query: 1281 TSENTTDKLTKPVTSDK 1297
            T+E   D  TK +   K
Sbjct: 1297 TNEQAADIFTKSLPQAK 1313


>UniRef100_Q9C739 Copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  645 bits (1663), Expect = 0.0
 Identities = 425/1315 (32%), Positives = 670/1315 (50%), Gaps = 106/1315 (8%)

Query: 49   DWNEMKEKAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKL---FAKQRL 105
            D  +  +KA  LI   + +D    +++ T+ K+ W+KL + Y     + K+     +   
Sbjct: 61   DSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEF 120

Query: 106  YSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGK 165
             +L+M+EG  +  +      +  ++ R G  +DD      +L SL   ++H+VT +   K
Sbjct: 121  EALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETK 180

Query: 166  D--SITLDSISSTLLPHAQRRQSVEE-----------------------GGGSSGEGLFV 200
            D  ++T++ +  +L  + ++++  E+                       GG   G G   
Sbjct: 181  DLEAMTIEQLLGSLQAYEEKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRG--- 237

Query: 201  KGGQDRGRG----------KGKAVDSGKKK-RSKSK-DRKTTECYSCKQIGHWKRDCPNR 248
            +GG   GRG          +G+    G+ K   KS+ D+ + +CY+C + GH+  +C   
Sbjct: 238  RGGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAP 297

Query: 249  SGKSGNNSSSANVVQSDGSCSEEDLLCVSSVKCTDA-----WVLDSGCSYHMTQHREWFN 303
            S K       AN V+      EED+L ++S K  +      W LDSG S HM   +  F 
Sbjct: 298  SNKKFEEK--ANYVEE--KIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFA 353

Query: 304  SFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMKNLISLGTLHEN 363
                   G V LGD+    +KG   + I L +G  + +S V Y+  +  N++SLG L E 
Sbjct: 354  ELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEK 413

Query: 364  GYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASV--ETDDDATKLWH 421
            GY  + ++N   +R  +  + + +   +   ++ L    I  D+A        + + LWH
Sbjct: 414  GYDIRLKDNNLSIRDQESNL-ITKVPMSKNRMFVL---NIRNDIAQCLKMCYKEESWLWH 469

Query: 422  MRLGHLSERGMMELHKRNMLKGVRSCIIG---LCKYCVLGKQCRVRF-KTGHHKTKGILD 477
            +R GHL+  G+  L ++ M++G+  CI     +C+ C+LGKQ ++ F K    + +  L+
Sbjct: 470  LRFGHLNFGGLELLSRKEMVRGL-PCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKSLE 528

Query: 478  YVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEVENQTGR 537
             +H+DV GP K  S+    YF+ F DDFSRK WVYF+K KSEVF  FK +KA VE ++G 
Sbjct: 529  LIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGL 588

Query: 538  KIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKARCLRLN 597
             IK +RSD G E+T K F+ +CE+NGI+R  +V ++PQQNGVAER NRT+ E AR +  +
Sbjct: 589  VIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKS 648

Query: 598  ACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAYVHISSE 657
              L K LWA  +  A YL+NRSP  S+ GK  +E W+G    +S+LR+F   A+ H+  E
Sbjct: 649  KRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDE 708

Query: 658  DRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SML----KQSDVTVV 713
             RSKLD KS+  I IGY+   KGYKL++P  KK I+SR++VFDE         + D    
Sbjct: 709  KRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFF 768

Query: 714  PDTEVENSSQDKIQVDIEETPVSPRQIVAQQQSEPGSDSG----EVQDYTLVRDREPSRI 769
            P  E +     + +   EE    P    + Q  E  S+       +Q+   V + +    
Sbjct: 769  PHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQ---- 824

Query: 770  TPPVRYGFEDLAAYALLTSSGDPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQL 829
                    E+L  + L     +P  + EA+   EK  W +AM EE++S++KN+T  L  L
Sbjct: 825  --------ENLTLFCLFAEC-EPMDFQEAI---EKKTWRNAMDEEIKSIQKNDTWELTSL 872

Query: 830  PHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVV 889
            P+G + IG KWVYK K      E E++KA LV KGY Q  GIDYDE+F+PV R  ++R++
Sbjct: 873  PNGHKTIGVKWVYKAKKNSK-GEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRLI 931

Query: 890  LALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSP 949
            ++L A     + QMDVK+ FL+G+LEE++YIEQP+G+   G+   V +LK++LYGLKQ+P
Sbjct: 932  ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKALYGLKQAP 991

Query: 950  RQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKT 1009
            R W  R D Y     + +C Y+  +Y+  +     +   LYVDD++   N+     E K 
Sbjct: 992  RAWNTRIDKYFKEKDFIKCPYEHALYI-KIQKEDILIACLYVDDLIFTGNNPSMFEEFKK 1050

Query: 1010 KLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTN 1069
            ++ KEF+M D+G     LG+E+ ++     ++++Q+ Y + VL +F M  +N V TP+  
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNG--IFITQEGYAKEVLKKFKMDDSNPVCTPM-- 1106

Query: 1070 HFKLSLEQSPKIDSEIEGMSKIPYAVQLVV*CMLWFAL---DQIWHKQLVKCQVHVQARE 1126
                  E   K+  + EG    P   + +V  + +      D ++   +V   +      
Sbjct: 1107 ------ECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTT 1160

Query: 1127 AALGSSQVDPKILEGYN-GSRYHV*QGARCCSISCGICGLCR*SR**KVYNRICLYSCGG 1185
                + ++   I    N G  Y      +    S    G     R  K  +    Y    
Sbjct: 1161 HFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR--KSTSGFVFYIGDT 1218

Query: 1186 PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGG-VQLHCDSQSAIY 1244
               W S  Q  V +ST EAEY+A       A+WL  L+KEL + Q    ++  D++SAI 
Sbjct: 1219 AFTWMSKKQPIVVLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIA 1278

Query: 1245 LTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKFM 1299
            L  N V+H R+KHID R+H IRE ++ + + L+ + T +   D  TKP+  + F+
Sbjct: 1279 LAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFI 1333


>UniRef100_Q9SXB2 T28P6.8 protein [Arabidopsis thaliana]
          Length = 1352

 Score =  642 bits (1656), Expect = 0.0
 Identities = 424/1315 (32%), Positives = 669/1315 (50%), Gaps = 106/1315 (8%)

Query: 49   DWNEMKEKAAGLITLCVSDDVMNHILDLTTLKDVWDKLESLYMSKTPMNKL---FAKQRL 105
            D  +  +KA  LI   + +D    +++ T+ K+ W+KL + Y     + K+     +   
Sbjct: 61   DSRKRDKKALCLIYQGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEF 120

Query: 106  YSLKMQEGGDLQAHVYAFNNILADMTRLGVTVDDEDKAIILLCSLPGSYDHLVTTLTYGK 165
             +L+M+EG  +  +      +  ++ R G  +DD      +L SL   ++H+VT +   K
Sbjct: 121  EALQMKEGELVSDYFSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETK 180

Query: 166  D--SITLDSISSTLLPHAQRRQSVEE-----------------------GGGSSGEGLFV 200
            D  ++T++ +  +L  + ++++  E+                       GG   G G   
Sbjct: 181  DLEAMTIEQLLGSLQAYEEKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRG--- 237

Query: 201  KGGQDRGRG----------KGKAVDSGKKK-RSKSK-DRKTTECYSCKQIGHWKRDCPNR 248
            +GG   GRG          +G+    G+ K   KS+ D+ + +CY+C + GH+  +C   
Sbjct: 238  RGGYGNGRGWRPHEDNTNQRGENSSRGRGKGHPKSRYDKSSVKCYNCGKFGHYASECKAP 297

Query: 249  SGKSGNNSSSANVVQSDGSCSEEDLLCVSSVKCTDA-----WVLDSGCSYHMTQHREWFN 303
            S K       AN V+      EED+L ++S K  +      W LDSG S HM   +  F 
Sbjct: 298  SNKKFEEK--ANYVEE--KIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFA 353

Query: 304  SFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMKNLISLGTLHEN 363
                   G V LGD+    +KG   + I L +G  + +S V Y+  +  N++SLG L E 
Sbjct: 354  ELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEK 413

Query: 364  GYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASV--ETDDDATKLWH 421
            GY  + ++N   +R  +  + + +   +   ++ L    I  D+A        + + LWH
Sbjct: 414  GYDIRLKDNNLSIRDQESNL-ITKVPMSKNRMFVL---NIRNDIAQCLKMCYKEESWLWH 469

Query: 422  MRLGHLSERGMMELHKRNMLKGVRSCIIG---LCKYCVLGKQCRVRF-KTGHHKTKGILD 477
            +R GHL+  G+  L ++ M++G+  CI     +C+ C+LGKQ ++ F K    + +  L+
Sbjct: 470  LRFGHLNFGGLELLSRKEMVRGL-PCINHPNQVCEGCLLGKQFKMSFPKESSSRAQKPLE 528

Query: 478  YVHSDVRGPTKEPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEVENQTGR 537
             +H+DV GP K  S+    YF+ F DDFSRK WVYF+K KSEVF  FK +KA VE ++G 
Sbjct: 529  LIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGL 588

Query: 538  KIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKARCLRLN 597
             IK +RSD G E+T K F+ +CE+NGI+R  +V ++PQQNGV ER NRT+ E AR +  +
Sbjct: 589  VIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKS 648

Query: 598  ACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAYVHISSE 657
              L K LWA  +  A YL+NRSP  S+ GK  +E W+G    +S+LR+F   A+ H+  E
Sbjct: 649  KRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDE 708

Query: 658  DRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVFDE*SML----KQSDVTVV 713
             RSKLD KS+  I IGY+   KGYKL++P  KK I+SR++VFDE         + D    
Sbjct: 709  KRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFF 768

Query: 714  PDTEVENSSQDKIQVDIEETPVSPRQIVAQQQSEPGSDSG----EVQDYTLVRDREPSRI 769
            P  E +     + +   EE    P    + Q  E  S+       +Q+   V + +    
Sbjct: 769  PHFEEDEPEPTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSIQELYEVTENQ---- 824

Query: 770  TPPVRYGFEDLAAYALLTSSGDPSTYHEAMAS*EKDKWMSAMVEEMESLKKNET*NLVQL 829
                    E+L  + L     +P  + +A+   EK  W +AM EE++S++KN+T  L  L
Sbjct: 825  --------ENLTLFCLFAEC-EPMDFQKAI---EKKTWRNAMDEEIKSIQKNDTWELTSL 872

Query: 830  PHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHKGIDYDEIFSPVVRHTSIRVV 889
            P+G + IG KWVYK K      E E++KA LV KGYSQ  GIDYDE+F+PV R  ++R++
Sbjct: 873  PNGHKAIGVKWVYKAKKNSK-GEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRLI 931

Query: 890  LALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSETGDGRLVCKLKRSLYGLKQSP 949
            ++L A     + QMDVK+ FL+G+LEE++YIEQP+G+   G+   V +LK+ LYGLKQ+P
Sbjct: 932  ISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKGEEDKVLRLKKVLYGLKQAP 991

Query: 950  RQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLLYVDDMLIAANHLHDVNELKT 1009
            R W  R D Y     + +C Y+  +Y+  +     +   LYVDD++   N+     E K 
Sbjct: 992  RAWNTRIDKYFKEKDFIKCPYEHALYI-KIQKEDILIACLYVDDLIFTGNNPSIFEEFKK 1050

Query: 1010 KLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVEGVLSRFDMSKANHVSTPLTN 1069
            ++ KEF+M D+G     LG+E+ ++     ++++Q+ Y + VL +F M  +N V TP+  
Sbjct: 1051 EMTKEFEMTDIGLMSYYLGIEVKQEDNG--IFITQEGYAKEVLKKFKMDDSNPVCTPM-- 1106

Query: 1070 HFKLSLEQSPKIDSEIEGMSKIPYAVQLVV*CMLWFAL---DQIWHKQLVKCQVHVQARE 1126
                  E   K+  + EG    P   + +V  + +      D ++   +V   +      
Sbjct: 1107 ------ECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILYAVGVVSRYMEHPTTT 1160

Query: 1127 AALGSSQVDPKILEGYN-GSRYHV*QGARCCSISCGICGLCR*SR**KVYNRICLYSCGG 1185
                + ++   I    N G  Y      +    S    G     R  K  +    Y    
Sbjct: 1161 HFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGGDVDDR--KSTSGFVFYIGDT 1218

Query: 1186 PICWKSSVQSTVAMSTTEAEYMAVAEAAKEALWLTGLVKELGVEQGG-VQLHCDSQSAIY 1244
               W S  Q  V +ST EAEY+A       A+WL  L+KEL + Q    ++  D++SAI 
Sbjct: 1219 AFTWMSKKQPIVTLSTCEAEYVAATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIA 1278

Query: 1245 LTNNQVYHARTKHIDVRFHKIRELLASRQILLQKIHTSENTTDKLTKPVTSDKFM 1299
            L  N V+H R+KHID R+H IRE ++ + + L+ + T +   D  TKP+  + F+
Sbjct: 1279 LAKNPVFHDRSKHIDTRYHYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFI 1333


>UniRef100_Q9AUZ1 Polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  604 bits (1557), Expect = e-171
 Identities = 335/825 (40%), Positives = 484/825 (58%), Gaps = 35/825 (4%)

Query: 295  MTQHREWFNSFKSGDLGYVYLGDDKPCIIKGMRQVKIALDDGGVRTLSQVRYVLEVMKNL 354
            MT  R+WF SF+  D   + LGDD     +G   +++    G +  L  V+YV  + +NL
Sbjct: 1    MTSRRDWFCSFQEKDTTKILLGDDHSVESQGQGSIRLDTHGGTITILENVKYVPNLRRNL 60

Query: 355  ISLGTLHENGYSFKSEENRDILRVSKGAMTVMRAKRTAGNIYKLLGGTIMGDVASVETDD 414
            IS GTL   GY  +  + +  +R  K   T +R    +G +Y L G T++ +    E   
Sbjct: 61   ISTGTLDRLGYKHEGGDGQ--VRYYKNNKTALRGS-LSGGLYVLDGNTVIAESCIAERSK 117

Query: 415  DATKLWHMRLGHLSERGMMELHKRNMLKGVRSCIIGLCKYCVLGKQCRVRFKTGHHKTKG 474
            + T LWH RLGH+    M  L  + ++K   +  +   ++CV+GK  +V F  G H ++ 
Sbjct: 118  ELTTLWHSRLGHMGGNNMKILAGKGLIKPSEATSLEFYEHCVMGKAKKVSFNIGKHNSEE 177

Query: 475  ILDYVHSDVRGPTK-EPSV*GFRYFVTFTDDFSRKVWVYFMKYKSEVFAKFKLWKAEVEN 533
            IL YVH+D+ G     PS+ G +YF++  DD SRKVW+YF++ K E F KF  WK  VEN
Sbjct: 178  ILSYVHADLWGSQNVTPSMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVEN 237

Query: 534  QTGRKIKYLRSDNGTEYTDKNFMHFCEENGIQRHFSVRKTPQQNGVAERMNRTLTEKARC 593
            QT +++K LR+DNG E+ +  F  +C++ GI+RH +   TPQQNGVAERMNRT+ EK RC
Sbjct: 238  QTDKRVKCLRTDNGLEFCNIKFDSYCKKYGIERHKTCTYTPQQNGVAERMNRTVMEKVRC 297

Query: 594  LRLNACLSKCLWAATINMACYLVNRSPRASLDGKVAEEVWTGNPIDLSNLRIFWRPAYVH 653
            L   + L +  WA     A Y++NRSP A++D  V EE+W        +LR     AYVH
Sbjct: 298  LLNESGLEEEFWAEVATTAVYIINRSPSAAIDHNVPEELWLNRKPGYKHLRRLRAVAYVH 357

Query: 654  ISSEDRSKLDPKSK*CIIIGYNKGVKGYKLWDPVKKKVIVSRDVVF----------DE*S 703
            +   D+ KL P++   I IGY  G KGYK+W   ++K ++SR+V+F          D+ +
Sbjct: 358  V---DQGKLKPRAIKGIFIGYPSGTKGYKVWLLEEQKCVISRNVIFQEEVVYKDLNDKET 414

Query: 704  MLKQSDVTVVPDTEVENSSQDKIQ-----VDIEETPVSPRQIVAQQQSEPGSD-----SG 753
            ++K+ D+    D  +  S   ++        IEE   S      + ++   +D      G
Sbjct: 415  VVKKEDIRTQTDNHLVISKTKEVSDQGGVTHIEECEESDENDEQEPETVNETDPTVESEG 474

Query: 754  EVQDYTLVRDREPSRITPPVRYGFEDLAAYALLT----SSGDPSTYHEAMAS*EKDKWMS 809
             + +Y L +DR   +I PP R+  E   A+AL+     S  +P +Y EA    E  KW +
Sbjct: 475  SLANYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKN 534

Query: 810  AMVEEMESLKKNET*NLVQLPHGKRVIGCKWVYKKKLAVT*KEREKFKAHLVTKGYSQHK 869
            A  EEM+SL KN T +LV  P  +++IGC+W++K K  +   E  +FKA LV KGY+Q +
Sbjct: 535  ATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQRE 594

Query: 870  GIDYDEIFSPVVRHTSIRVVLALVASMDMHLEQMDVKTTFLHGNLEEQIYIEQPEGFSET 929
            G+DY EIF+PVV+HTSIRV++++V   DM LEQMDVKT FLHG+LEE++Y+EQPEGF   
Sbjct: 595  GVDYQEIFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQPEGFITD 654

Query: 930  GDGRLVCKLKRSLYGLKQSPRQWYKRFDSYMLRIGYRRCDYDCCVYVMSLDDGSFIFLLL 989
                 VC LK+SLYGLKQSPRQW KRF  +M+   + R  +D CVYV  ++ G F++LLL
Sbjct: 655  KTKDKVCLLKKSLYGLKQSPRQWNKRFGRFMMEQKFIRSAHDACVYVKQVEQG-FVYLLL 713

Query: 990  YVDDMLIAANHLHDVNELKTKLGKEFDMKDLGAAKKILGMEIHKDRGAKKLWLSQKSYVE 1049
            YVDDMLIA     +VN +K +L  EF+MKD+G A +ILG +I +DR    L LSQ  Y+ 
Sbjct: 714  YVDDMLIAGKSKAEVNMIKEQLSVEFEMKDMGPASRILGKDITRDRKKGILRLSQAPYIR 773

Query: 1050 GVLSRFDMSKANHVSTPLTNHFKLSLEQSPKIDSEIEGMSKIPYA 1094
             ++ RF++ +A  V TP+  HFKL    + + D E     ++PY+
Sbjct: 774  KIVQRFNLDEARVVRTPIGAHFKL---PAVREDDECIDTEQVPYS 815


  Database: uniref100
    Posted date:  Jan 5, 2005  1:24 AM
  Number of letters in database: 848,049,833
  Number of sequences in database:  2,790,947
  
Lambda     K      H
   0.323    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,139,062,076
Number of Sequences: 2790947
Number of extensions: 89466004
Number of successful extensions: 244373
Number of sequences better than 10.0: 3994
Number of HSP's better than 10.0 without gapping: 3236
Number of HSP's successfully gapped in prelim test: 759
Number of HSP's that attempted gapping in prelim test: 232900
Number of HSP's gapped (non-prelim): 7606
length of query: 1307
length of database: 848,049,833
effective HSP length: 139
effective length of query: 1168
effective length of database: 460,108,200
effective search space: 537406377600
effective search space used: 537406377600
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)