BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0590c.10
(993 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 127 1e-28
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 127 1e-28
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 127 1e-28
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 125 6e-28
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 124 1e-27
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 110 2e-23
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 107 1e-22
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 105 6e-22
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 91 1e-17
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 89 8e-17
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 88 1e-16
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 88 1e-16
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 87 2e-16
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 86 5e-16
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 85 8e-16
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 85 8e-16
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 85 8e-16
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 84 1e-15
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 83 3e-15
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 81 2e-14
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 127 bits (320), Expect = 1e-28
Identities = 109/452 (24%), Positives = 189/452 (41%), Gaps = 44/452 (9%)
Query: 536 VEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVSRGRTWMDPIIS 595
+ Y P + N ADAL+++ +P I + SI + +S + + +++
Sbjct: 815 INYRPGSANHIADALSRIVDETEP------IPKDSEDNSIN--FVNQISITDDFKNQVVT 866
Query: 596 ILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVC 655
D + E +R + L DG L +L + I+ + HE
Sbjct: 867 EYTNDTKLLNLLNNEDKRVEENIQLKDGLLINS--KDQILLPNDTQLTRTIIKKYHEEGK 924
Query: 656 ASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV--------FADLSKAPPKELV 707
H G L +LR F W +RK ++V+ C CQ+ + L PP E
Sbjct: 925 LIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER- 982
Query: 708 TMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAK-ITSAKIVNFYWK 766
P+ +D + P + + V VD F+K P K IT+ + + +
Sbjct: 983 ------PWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQTARMFDQ 1035
Query: 767 RIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRG 826
R++ FG P+ I++DN F+S ++F + M+F+ PQT+GQ E N+ + +
Sbjct: 1036 RVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
Query: 827 LRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVD-AMLPVEIDNFTWRTRP 885
LR + W+D + V SYN S T+ TPF + + A+ P+E+ P
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL--------P 1147
Query: 886 GFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSG 945
F ++ N + + ++ + MK+ K + E Q GDLV+ R+
Sbjct: 1148 SFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ---EIEEFQPGDLVMVKRTK 1204
Query: 946 A----PGNKLTPNWEGPYRIIKVLGNGAYHLE 973
NKL P++ GP+ +++ G Y L+
Sbjct: 1205 TGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 127 bits (320), Expect = 1e-28
Identities = 109/452 (24%), Positives = 189/452 (41%), Gaps = 44/452 (9%)
Query: 536 VEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVSRGRTWMDPIIS 595
+ Y P + N ADAL+++ +P I + SI + +S + + +++
Sbjct: 815 INYRPGSANHIADALSRIVDETEP------IPKDSEDNSIN--FVNQISITDDFKNQVVT 866
Query: 596 ILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVC 655
D + E +R + L DG L +L + I+ + HE
Sbjct: 867 EYTNDTKLLNLLNNEDKRVEENIQLKDGLLINS--KDQILLPNDTQLTRTIIKKYHEEGK 924
Query: 656 ASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV--------FADLSKAPPKELV 707
H G L +LR F W +RK ++V+ C CQ+ + L PP E
Sbjct: 925 LIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER- 982
Query: 708 TMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAK-ITSAKIVNFYWK 766
P+ +D + P + + V VD F+K P K IT+ + + +
Sbjct: 983 ------PWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQTARMFDQ 1035
Query: 767 RIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRG 826
R++ FG P+ I++DN F+S ++F + M+F+ PQT+GQ E N+ + +
Sbjct: 1036 RVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
Query: 827 LRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVD-AMLPVEIDNFTWRTRP 885
LR + W+D + V SYN S T+ TPF + + A+ P+E+ P
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL--------P 1147
Query: 886 GFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSG 945
F ++ N + + ++ + MK+ K + E Q GDLV+ R+
Sbjct: 1148 SFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ---EIEEFQPGDLVMVKRTK 1204
Query: 946 A----PGNKLTPNWEGPYRIIKVLGNGAYHLE 973
NKL P++ GP+ +++ G Y L+
Sbjct: 1205 TGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 127 bits (320), Expect = 1e-28
Identities = 109/452 (24%), Positives = 189/452 (41%), Gaps = 44/452 (9%)
Query: 536 VEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVSRGRTWMDPIIS 595
+ Y P + N ADAL+++ +P I + SI + +S + + +++
Sbjct: 815 INYRPGSANHIADALSRIVDETEP------IPKDSEDNSIN--FVNQISITDDFKNQVVT 866
Query: 596 ILEGDPAEVEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPPEKYEAIMSEVHEGVC 655
D + E +R + L DG L +L + I+ + HE
Sbjct: 867 EYTNDTKLLNLLNNEDKRVEENIQLKDGLLINS--KDQILLPNDTQLTRTIIKKYHEEGK 924
Query: 656 ASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV--------FADLSKAPPKELV 707
H G L +LR F W +RK ++V+ C CQ+ + L PP E
Sbjct: 925 LIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSER- 982
Query: 708 TMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAK-ITSAKIVNFYWK 766
P+ +D + P + + V VD F+K P K IT+ + + +
Sbjct: 983 ------PWESLSMDFITALPESSGY-NALFVVVDRFSKMAILVPCTKSITAEQTARMFDQ 1035
Query: 767 RIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRG 826
R++ FG P+ I++DN F+S ++F + M+F+ PQT+GQ E N+ + +
Sbjct: 1036 RVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKL 1095
Query: 827 LRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVD-AMLPVEIDNFTWRTRP 885
LR + W+D + V SYN S T+ TPF + + A+ P+E+ P
Sbjct: 1096 LRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLEL--------P 1147
Query: 886 GFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSG 945
F ++ N + + ++ + MK+ K + E Q GDLV+ R+
Sbjct: 1148 SFSDKTDENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQ---EIEEFQPGDLVMVKRTK 1204
Query: 946 A----PGNKLTPNWEGPYRIIKVLGNGAYHLE 973
NKL P++ GP+ +++ G Y L+
Sbjct: 1205 TGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1236
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 125 bits (314), Expect = 6e-28
Identities = 107/357 (29%), Positives = 166/357 (45%), Gaps = 32/357 (8%)
Query: 635 LKCVPPEK-YEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQ 693
++ VPP+ E I+S H +H G + KV + ++WP LRKD + ++QCK+C
Sbjct: 807 IRIVPPKADREKIISTAHN---IAHTGRDATFLKV-SSKYWWPNLRKDVVKSIRQCKQCL 862
Query: 694 VFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL- 752
V + P L + PF + +D +GP P + + +LV VD T ++ P
Sbjct: 863 VTNATNLTSPPILRPVKPLKPFDKFYIDYIGPLPPSNGYLH-VLVVVDSMTGFVWLYPTK 921
Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
A TSA + ++ IP+ + SD G F+SS ++ KE GIQ+ F++ HPQ+
Sbjct: 922 APSTSATVKAL---NMLTSIAIPKVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQS 978
Query: 813 NGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAML 872
+G+VE N I R L + L W D LP V + N + +++ TP ++ +GVD+
Sbjct: 979 SGKVERKNSDIKRLLTKLLIGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGVDSNT 1038
Query: 873 PVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVRE 932
P + +R EE EL LL E R H Q + +S R
Sbjct: 1039 PFANSDTLDLSR---EE--------ELSLLQEIRSSLH-------QPTSPPASS--RSWS 1078
Query: 933 MQVGDLVLKWRSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSL 989
VG LV + R P + L P W P I++V+ + + G R S + L L
Sbjct: 1079 PSVGQLVQE-RVARPAS-LRPRWHKPTAILEVVNPRTVIILDHLGNRRTVSVDNLKL 1133
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 124 bits (311), Expect = 1e-27
Identities = 101/356 (28%), Positives = 164/356 (45%), Gaps = 32/356 (8%)
Query: 636 KCVPPEKYEA-IMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQV 694
+ +PP+ I+ + H +H G S KV + ++WP LRKD + ++QCK+C V
Sbjct: 810 RIIPPKSDRPQIILQAHN---IAHTGRDSTFLKV-SSKYWWPNLRKDVVKVIRQCKQCLV 865
Query: 695 FADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL-A 753
+ A P L PF + +D +GP P + + +LV VD T ++ P A
Sbjct: 866 TNAATLAAPPILRPERPVKPFDKFFIDYIGPLPPSNGYLH-VLVVVDSMTGFVWLYPTKA 924
Query: 754 KITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTN 813
TSA + ++ +P+ I SD G F+S+ ++ K GIQ+ F++ HPQ++
Sbjct: 925 PSTSATVKAL---NMLTSIAVPKVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSS 981
Query: 814 GQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLP 873
G+VE N I R L + L W D LP V + N + +++ TP ++ +G+D+ P
Sbjct: 982 GKVERKNSDIKRLLTKLLVGRPAKWYDLLPVVQLALNNSYSPSSKYTPHQLLFGIDSNTP 1041
Query: 874 VEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREM 933
+ +R EE EL LL E R ++ T + +R
Sbjct: 1042 FANSDTLDLSR---EE--------ELSLLQEIRSSLYLPSTP---------PASIRAWSP 1081
Query: 934 QVGDLVLKWRSGAPGNKLTPNWEGPYRIIKVLGNGAYHLEELDGRRLPRSFNGLSL 989
VG LV + R P + L P W P +++V+ A + + G R S + L L
Sbjct: 1082 SVGQLVQE-RVARPAS-LRPRWHKPTPVLEVINPRAVVILDHLGNRRTVSVDNLKL 1135
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 110 bits (274), Expect = 2e-23
Identities = 71/241 (29%), Positives = 119/241 (48%), Gaps = 10/241 (4%)
Query: 635 LKCVPPEK-YEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQ 693
+K +PP+ + I+ + H +H G + K+ ++WP +RKD + + +C++C
Sbjct: 599 VKIIPPQSDRQKIVLQAHN---LAHTGREATLLKIANL-YWWPNMRKDVVKQLGRCQQCL 654
Query: 694 VFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPL- 752
+ +KA L PF + +D +GP P ++ + ++LV VD T + P
Sbjct: 655 ITNASNKASGPILRPDRPQKPFDKFFIDYIGPLPPSQGYL-YVLVVVDGMTGFTWLYPTK 713
Query: 753 AKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQT 812
A TSA + + ++ IP+ I SD G F+SS E+ KE GI + F++ HPQ+
Sbjct: 714 APSTSATVKSL---NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQS 770
Query: 813 NGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAML 872
+VE N I R L + L W D LP V + N T + TP ++ +G+D+
Sbjct: 771 GSKVERKNSDIKRLLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNT 830
Query: 873 P 873
P
Sbjct: 831 P 831
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 107 bits (268), Expect = 1e-22
Identities = 77/336 (22%), Positives = 156/336 (45%), Gaps = 7/336 (2%)
Query: 633 PLLKCVPPEKYEAIMSEVHEG-VCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKE 691
P+ + ++ EAI+S +H+ + H G KV R +YW + K ++V++C++
Sbjct: 883 PVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRH-YYWKNMSKYIKEYVRKCQK 941
Query: 692 CQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEP 751
CQ +T + F VD +GP P + ++ + + TK++ A P
Sbjct: 942 CQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYLVAIP 1001
Query: 752 LAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQ 811
+A ++ + ++ + ++G + ++D GT++ +S + CK + I+ ++ H Q
Sbjct: 1002 IANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKNITSTAHHHQ 1061
Query: 812 TNGQVESANRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAM 871
T G VE ++R + +R ++ K W L ++ +NTT+ P+ + +G +
Sbjct: 1062 TVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPYELVFGRTSN 1121
Query: 872 LPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVR 931
LP N P + ++ A + ++ R + A K++ ++ +V+
Sbjct: 1122 LPKHF-NKLHSIEPIYNIDDYAKESKYRLEVAYARARKLLE--AHKEKNKENYDLKVKDI 1178
Query: 932 EMQVGDLVLKWRSGAPGNKLTPNWEGPYRIIKVLGN 967
E++VGD VL G+KL + GPY+I + N
Sbjct: 1179 ELEVGDKVL--LRNEVGHKLDFKYTGPYKIESIGDN 1212
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 105 bits (262), Expect = 6e-22
Identities = 104/456 (22%), Positives = 191/456 (41%), Gaps = 25/456 (5%)
Query: 533 EVVVEYVPRAENQRADALAKLASTRKPGNNKSVIQETLAYPSIEGELMACVSRGRTWMD- 591
+V + Y+ N ADAL++ + + T +I+ EL + W++
Sbjct: 1344 DVKIVYLAGKANAVADALSRGGCPPNELEEEQTKELTSIVNAIQTELPDILDSS-CWLER 1402
Query: 592 ---------PIISILEGDPAE--VEQCTKEQQREASHYTLIDGHLYRRGFSTPLLKCVPP 640
+I+ LEG + + E + +Y ++ G L VP
Sbjct: 1403 LKGEDEGWKEVIAALEGGKTKGTFKIVGIESEISLEYYKIVGGVLKNTEIEEQSRSVVPE 1462
Query: 641 EKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLSK 700
+ ++ E+HEG+ A H G + + +++ FYWP +R + V+ C +C D SK
Sbjct: 1463 KIRTPLLKELHEGMLAGHFGIKKM-WRMVHRKFYWPQMRVCVENCVRTCAKCLCANDHSK 1521
Query: 701 APPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKI 760
L +P + DL+ + + ++IL +D FTK+ A P+ + +
Sbjct: 1522 LT-SSLTPYRMTFPLEIVACDLMDVGLSVQGN-RYILTIIDLFTKYGTAVPIPDKKAETV 1579
Query: 761 VNFYWKRIVCRFG-IPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESA 819
+ + +R G IP +++D G +F + +F + I+ + + NG VE
Sbjct: 1580 LKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGAVERF 1639
Query: 820 NRVILRGLRRRLAEAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEI--D 877
N+ I+ ++++ A W D++ +++YN T ETP + +G D M P+E+ +
Sbjct: 1640 NKTIMHIMKKKTAVPM-EWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEMSGE 1698
Query: 878 NFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGD 937
+ +E L + ++ A + + K K+ S+ + R Q G
Sbjct: 1699 DAVGINYADMDEYKHLLTQELLKVQKIAKEHAMREQESYKSLFDQKYASK-KHRFPQPGS 1757
Query: 938 LVL----KWRSGAPGNKLTPNWEGPYRIIKVLGNGA 969
VL + GA KL W GPYR+I N A
Sbjct: 1758 RVLLEIPSEKLGAQCPKLVNKWSGPYRVISCSENSA 1793
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 91.3 bits (225), Expect = 1e-17
Identities = 87/332 (26%), Positives = 144/332 (43%), Gaps = 33/332 (9%)
Query: 638 VPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQ-VFA 696
+P ++ A++ ++H +H+G R L + + F P CK CQ V A
Sbjct: 832 LPQKEALAMIQQMHAW---THLGNRKLKLLIEKTDFLIPRASTLIEQVTSACKVCQQVNA 888
Query: 697 DLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKIT 756
++ P + + P + W +D P A K++LV VD F+ W+EA P + T
Sbjct: 889 GATRVPAGKRTRGNRPGVY--WEIDFTEVKPHY-AGYKYLLVFVDTFSGWVEAFPTRQET 945
Query: 757 SAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQV 816
+ + + I RFG+P+ I SDNG F S ++ + +GI + PQ++GQV
Sbjct: 946 AHIVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQV 1005
Query: 817 ESANRVILRGLRR-RLAEAKGAWLDELP-AVLWSYNTTEQSTTRETPFRMTYGVDAMLPV 874
E NR I L + L W L A+L + NT + TP+ + YG L
Sbjct: 1006 ERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGL--TPYEILYGGPPPLST 1063
Query: 875 EIDNFT-WRTRPGFEEENQANMAVELDL---LSETRDEAHIRETAMKQRVAAKFNSRVRV 930
+++F+ ++ + + AV+ + L+E H + +
Sbjct: 1064 LLNSFSPSNSKTDLQARLKGLQAVQAQIWAPLAELYRPGHSQTS---------------- 1107
Query: 931 REMQVGDLVLKWRSGAPGNKLTPNWEGPYRII 962
QVGD V R + G L P W+GPY ++
Sbjct: 1108 HPFQVGDSVYVRRHRSQG--LEPRWKGPYIVL 1137
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 88.6 bits (218), Expect = 8e-17
Identities = 86/331 (25%), Positives = 134/331 (39%), Gaps = 41/331 (12%)
Query: 684 DFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYF 743
D + CK C + SK+ K+ + P W +D P K++LV VD F
Sbjct: 885 DITETCKACAQ-VNASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGY-KYLLVFVDTF 942
Query: 744 TKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMR 803
+ W+EA P K T+ + + I RFG+P+ + +DNG F S ++ +G+ +
Sbjct: 943 SGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQTVADLLGVDWK 1002
Query: 804 FASVEHPQTNGQVESANRVILRGLRR-RLAEAKGAWLDELPAVLWSYNTTEQSTTRETPF 862
PQ++GQVE NR I L + LA W+ LP L+ T TP+
Sbjct: 1003 LHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT-PGPHGLTPY 1061
Query: 863 RMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHIRETAMKQRVAA 922
+ YG L F + + A + L + + ++ + AA
Sbjct: 1062 EILYGAPPPL------------VNFPDPDMAKVTHNPSLQAHLQALYLVQHEVWRPLAAA 1109
Query: 923 ---KFNSRVRVREMQVGDLVLKWRSGAPGNKLTPNWEGPYRI-------IKVLGNGAY-- 970
+ + V +VGD V W L P W+GPY + +KV G A+
Sbjct: 1110 YQEQLDRPVVPHPFRVGDTV--WVRRHQTKNLEPRWKGPYTVLLTTPTALKVDGIAAWIH 1167
Query: 971 --HLEELDGR---------RLPRSFNGLSLR 990
H++ D R R+ RS N L +R
Sbjct: 1168 AAHVKAADTRIEPPAESTWRVQRSQNPLKIR 1198
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 87.8 bits (216), Expect = 1e-16
Identities = 86/342 (25%), Positives = 137/342 (39%), Gaps = 41/342 (11%)
Query: 673 FYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQ 732
+Y + D + CK C + SK+ K+ + P W +D P
Sbjct: 874 YYMLNRDRTLKDITETCKACAQ-VNASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGY 932
Query: 733 MKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTR 792
K++LV VD F+ W+EA P K T+ + + I RFG+P+ + +DNG F S ++
Sbjct: 933 -KYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQ 991
Query: 793 EFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLAEAKGAWLDELPAVLWSYNT 851
+G+ + PQ++GQVE NR I L + LA W+ LP L+
Sbjct: 992 TVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN 1051
Query: 852 TEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHI 911
T TP+ + YG L F + + A + L + + +
Sbjct: 1052 T-PGPHGLTPYEILYGAPPPL------------VNFPDPDMAKVTHNPSLQAHLQALYLV 1098
Query: 912 RETAMKQRVAA---KFNSRVRVREMQVGDLVLKWRSGAPGNKLTPNWEGPYRI------- 961
+ + AA + + V +VGD V W L P W+GPY +
Sbjct: 1099 QHEVWRPLAAAYQEQLDRPVVPHPFRVGDTV--WVRRHQTKNLEPRWKGPYTVLLTTPTA 1156
Query: 962 IKVLGNGAY----HLEELDGR---------RLPRSFNGLSLR 990
+KV G A+ H++ D + R+ RS N L +R
Sbjct: 1157 LKVDGIAAWIHAAHVKAADTKIEPPSESTWRVQRSQNPLKIR 1198
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 87.8 bits (216), Expect = 1e-16
Identities = 84/327 (25%), Positives = 135/327 (40%), Gaps = 26/327 (7%)
Query: 640 PEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQVFADLS 699
P++ + + +H+ +H+G L V R P L+ + QC+ C + +
Sbjct: 806 PDRGKEFIKRLHQ---LTHLGPEKLLQLVNRTSLLIPNLQSAVREVTSQCQACAM-TNAV 861
Query: 700 KAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAK 759
+ P W VD P R K++LV +D F+ W+EA P T+
Sbjct: 862 TTYRETGKRQRGDRPGVYWEVDFTEIKP-GRYGNKYLLVFIDTFSGWVEAFPTKTETALI 920
Query: 760 IVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESA 819
+ + I+ RFGIP+ + SDNG F + ++ ++GI + PQ++GQVE
Sbjct: 921 VCKKILEEILPRFGIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERM 980
Query: 820 NRVILRGLRRRLAEAKGA-WLDELP-AVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEID 877
NR I L + E G W+ LP A+L + NT + TP+ + YG + +
Sbjct: 981 NRTIKETLTKLALETGGKDWVTLLPLALLRARNTPGRFGL--TPYEILYGGPPPILESGE 1038
Query: 878 NFTWRTRPGFEEENQANMAVELDLLSETRDEA--HIRETAMKQRVAAKFNSRVRVREMQV 935
G ++ + L L R + I+E V QV
Sbjct: 1039 TL------GPDDRFLPVLFTHLKALEIVRTQIWDQIKEVYKPGTVTIP-------HPFQV 1085
Query: 936 GDLVLKWRSGAPGNKLTPNWEGPYRII 962
GD VL R + L P W+GPY ++
Sbjct: 1086 GDQVLVRRHRP--SSLEPRWKGPYLVL 1110
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 87.0 bits (214), Expect = 2e-16
Identities = 85/342 (24%), Positives = 137/342 (39%), Gaps = 41/342 (11%)
Query: 673 FYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQ 732
+Y + D + C+ C + SK+ K+ + P W +D P
Sbjct: 874 YYMLNRDRTLKDITETCQACAQ-VNASKSAVKQGTRVRGHRPGTHWEIDFTEVKPGLYGY 932
Query: 733 MKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTR 792
K++LV +D F+ W+EA P K T+ + + I RFG+P+ + +DNG F S ++
Sbjct: 933 -KYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQ 991
Query: 793 EFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLAEAKGAWLDELPAVLWSYNT 851
+G+ + PQ++GQVE NR I L + LA W+ LP L+
Sbjct: 992 TVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN 1051
Query: 852 TEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDEAHI 911
T TP+ + YG L F + + A + L + + +
Sbjct: 1052 T-PGPHGLTPYEILYGAPPPL------------VNFPDPDMAKVTHNPSLQAHLQALYLV 1098
Query: 912 RETAMKQRVAA---KFNSRVRVREMQVGDLVLKWRSGAPGNKLTPNWEGPYRI------- 961
+ + AA + + V +VGD V W L P W+GPY +
Sbjct: 1099 QHEVWRPLAAAYQEQLDRPVVPHPFRVGDTV--WVRRHQTKNLEPRWKGPYTVLLTTPTA 1156
Query: 962 IKVLGNGAY----HLEELDGR---------RLPRSFNGLSLR 990
+KV G A+ H++ D R R+ RS N L +R
Sbjct: 1157 LKVDGIAAWIHAAHVKAADTRIEPPSESTWRVQRSQNPLKIR 1198
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 85.9 bits (211), Expect = 5e-16
Identities = 78/292 (26%), Positives = 119/292 (40%), Gaps = 17/292 (5%)
Query: 673 FYWPTLRKDCMDFVKQCKECQVFADLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQ 732
+Y + + + CK C + SK+ K+ + P W +D P
Sbjct: 869 YYMLNRDRTLKNITETCKACAQ-VNASKSAVKQGTRVRGHRPGTHWEIDFTEIKPGLYGY 927
Query: 733 MKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTR 792
K++LV +D F+ WIEA P K T+ + + I RFG+P+ + +DNG F S ++
Sbjct: 928 -KYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQ 986
Query: 793 EFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLAEAKGAWLDELPAVLWSYNT 851
+GI + PQ++GQVE NR I L + LA W+ LP L+
Sbjct: 987 TVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARN 1046
Query: 852 TEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEE-ENQANMAVELDLLSETRDEAH 910
T TP+ + YG P + NF P N ++ L L + E
Sbjct: 1047 T-PGPHGLTPYEILYGA----PPPLVNF---PDPDMTRVTNSPSLQAHLQALYLVQHEVW 1098
Query: 911 IRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGAPGNKLTPNWEGPYRII 962
A Q + + V +VGD V W L P W+GPY ++
Sbjct: 1099 RPLAAAYQE---QLDRPVVPHPYRVGDTV--WVRRHQTKNLEPRWKGPYTVL 1145
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 85.1 bits (209), Expect = 8e-16
Identities = 83/314 (26%), Positives = 129/314 (40%), Gaps = 27/314 (8%)
Query: 657 SHIGGRSLACKVLRAGFYWPTLRKD-CMDFVKQCKECQVFADL--SKAPPKELVTMSAPW 713
+H+G + + + R + L +D + +V C V A + SKA V +
Sbjct: 236 THLGYQKMKALLDRGESPYYMLNRDKTLQYVAD--SCTVCAQVNASKAKIGAGVRVRGHR 293
Query: 714 PFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFG 773
P W +D P K++LV VD F+ W+EA P T+ + + I RFG
Sbjct: 294 PGTHWEIDFTEVKPGLYGY-KYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFG 352
Query: 774 IPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLA 832
+P+ + +DNG F S ++ K +GI + PQ++GQVE NR I L + LA
Sbjct: 353 MPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLA 412
Query: 833 EAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAML----PVEIDNFTWRTRPGFE 888
W+ LP L+ T TP+ + YG L E+ FT P +
Sbjct: 413 TGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPLVNFHDPEMSKFT--NSPSLQ 469
Query: 889 EENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGAPG 948
QA AV+ ++ + + + V +VGD V W
Sbjct: 470 AHLQALQAVQREVWK-----------PLAAAYQDQLDQPVIPHPFRVGDTV--WVRRHQT 516
Query: 949 NKLTPNWEGPYRII 962
L P W+GPY ++
Sbjct: 517 KNLEPRWKGPYTVL 530
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 85.1 bits (209), Expect = 8e-16
Identities = 83/314 (26%), Positives = 129/314 (40%), Gaps = 27/314 (8%)
Query: 657 SHIGGRSLACKVLRAGFYWPTLRKD-CMDFVKQCKECQVFADL--SKAPPKELVTMSAPW 713
+H+G + + + R + L +D + +V C V A + SKA V +
Sbjct: 851 THLGYQKMKALLDRGESPYYMLNRDKTLQYVAD--SCTVCAQVNASKAKIGAGVRVRGHR 908
Query: 714 PFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFG 773
P W +D P K++LV VD F+ W+EA P T+ + + I RFG
Sbjct: 909 PGTHWEIDFTEVKPGLYGY-KYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFG 967
Query: 774 IPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLA 832
+P+ + +DNG F S ++ K +GI + PQ++GQVE NR I L + LA
Sbjct: 968 MPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLA 1027
Query: 833 EAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAML----PVEIDNFTWRTRPGFE 888
W+ LP L+ T TP+ + YG L E+ FT P +
Sbjct: 1028 TGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPLVNFHDPEMSKFT--NSPSLQ 1084
Query: 889 EENQANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGAPG 948
QA AV+ ++ + + + V +VGD V W
Sbjct: 1085 AHLQALQAVQREVWK-----------PLAAAYQDQLDQPVIPHPFRVGDTV--WVRRHQT 1131
Query: 949 NKLTPNWEGPYRII 962
L P W+GPY ++
Sbjct: 1132 KNLEPRWKGPYTVL 1145
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 85.1 bits (209), Expect = 8e-16
Identities = 82/311 (26%), Positives = 131/311 (41%), Gaps = 21/311 (6%)
Query: 657 SHIGGRSLACKVLRAGFYWPTLRKD-CMDFVKQCKECQVFADL--SKAPPKELVTMSAPW 713
+H+G + + + R + L +D + +V C V A + SKA V +
Sbjct: 851 THLGYQKMKALLDRGESPYYMLNRDKTLQYVAD--SCTVCAQVNASKAKIGAGVRVRGHR 908
Query: 714 PFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFG 773
P + W +D P K++LV VD F+ W+EA P + T+ + + I RFG
Sbjct: 909 PGSHWEIDFTEVKPGLYGY-KYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFG 967
Query: 774 IPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLA 832
+P+ + SDNG F+S ++ +GI + PQ++GQVE NR I L + LA
Sbjct: 968 MPQVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLA 1027
Query: 833 EAKGAWLDELPAVLWSYNTTEQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEE-EN 891
W+ LP L+ T TP+ + YG P + NF P E N
Sbjct: 1028 AGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGA----PPPLVNF---HDPDMSELTN 1079
Query: 892 QANMAVELDLLSETRDEAHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGAPGNKL 951
++ L L + E + + + + V ++GD V W L
Sbjct: 1080 SPSLQAHLQALQTVQREIW---KPLAEAYRDQLDQPVIPHPFRIGDSV--WVRRHQTKNL 1134
Query: 952 TPNWEGPYRII 962
P W+GPY ++
Sbjct: 1135 EPRWKGPYTVL 1145
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 84.3 bits (207), Expect = 1e-15
Identities = 84/333 (25%), Positives = 142/333 (42%), Gaps = 35/333 (10%)
Query: 638 VPPEKYEAIMSEVHEGVCASHIGGRSLACKVLRAGFYWPTLRKDCMDFVKQCKECQ-VFA 696
+P ++ A++ ++H +H+ + L + + F P CK CQ V A
Sbjct: 689 LPRKEALAMIQQMHAW---THLSNQKLKLLIEKTDFLIPKAGTLIEQVTSACKVCQQVNA 745
Query: 697 DLSKAPPKELVTMSAPWPFAMWGVDLVGPFPTARAQMKFILVAVDYFTKWIEAEPLAKIT 756
++ P + + P + W +D P A K++LV VD F+ W+EA P + T
Sbjct: 746 GATRVPEGKRTRGNRPGVY--WEIDFTEVKPHY-AGYKYLLVFVDTFSGWVEAYPTRQET 802
Query: 757 SAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTREFCKEMGIQMRFASVEHPQTNGQV 816
+ + + I RFG+P+ I SDNG F S ++ + +GI + PQ++GQV
Sbjct: 803 AHMVAKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQGLARTLGINWKLHCAYRPQSSGQV 862
Query: 817 ESANRVILRGLRR-RLAEAKGAWLDELP-AVLWSYNTTEQSTTRETPFRMTYGVDAMLPV 874
E NR I L + L W L A+L + NT + TP+ + YG L
Sbjct: 863 ERMNRTIKETLTKLTLETGLKDWRRLLSLALLRARNTPNRFGL--TPYEILYGGPPPLST 920
Query: 875 EIDNFT-WRTRPGFEEENQANMAVELDL---LSETRDEAHIRETAMKQRVAAKFNSRVRV 930
+++F+ + + + AV+ + L+E H + +
Sbjct: 921 LLNSFSPSDPKTDLQARLKGLQAVQAQIWTPLAELYRPGHPQTS---------------- 964
Query: 931 REMQVGDLV-LKWRSGAPGNKLTPNWEGPYRII 962
QVGD V ++W L P W+GPY ++
Sbjct: 965 YPFQVGDSVYVRWHR---SQGLEPRWKGPYIVL 994
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 83.2 bits (204), Expect = 3e-15
Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 734 KFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTRE 793
K++LV VD F+ W+EA P T+ + + I RFG+P+ + +DNG F S ++
Sbjct: 137 KYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQS 196
Query: 794 FCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLAEAKGAWLDELPAVLWSYNTT 852
K +GI + PQ++GQVE NR I L + LA W+ LP L+ T
Sbjct: 197 VAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT 256
Query: 853 EQSTTRETPFRMTYGVDAML----PVEIDNFTWRTRPGFEEENQANMAVELDLLSETRDE 908
TP+ + YG L E+ FT P + QA AV+ ++
Sbjct: 257 -PGPHGLTPYEILYGAPPPLVNFHDPEMSKFT--NSPSLQAHLQALQAVQREVWK----- 308
Query: 909 AHIRETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGAPGNKLTPNWEGPYRII 962
+ + + V +VGD V W L P W+GPY ++
Sbjct: 309 ------PLAAAYQDQLDQPVIPHPFRVGDTV--WVRRHQTKNLEPRWKGPYTVL 354
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 80.9 bits (198), Expect = 2e-14
Identities = 68/231 (29%), Positives = 99/231 (42%), Gaps = 15/231 (6%)
Query: 734 KFILVAVDYFTKWIEAEPLAKITSAKIVNFYWKRIVCRFGIPRAIVSDNGTQFSSSQTRE 793
K++LV VD F+ WIEA P K T+ + + I RFG+P+ + +DNG F S ++
Sbjct: 14 KYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVSQT 73
Query: 794 FCKEMGIQMRFASVEHPQTNGQVESANRVILRGLRR-RLAEAKGAWLDELPAVLWSYNTT 852
+GI + PQ++GQVE NR I L + LA W+ LP L+ T
Sbjct: 74 VADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRARNT 133
Query: 853 EQSTTRETPFRMTYGVDAMLPVEIDNFTWRTRPGFEE-ENQANMAVELDLLSETRDEAHI 911
TP+ + YG P + NF P N ++ L L + E
Sbjct: 134 -PGPHGLTPYEILYGA----PPPLVNF---PDPDMTRVTNSPSLQAHLQALYLVQHEVWR 185
Query: 912 RETAMKQRVAAKFNSRVRVREMQVGDLVLKWRSGAPGNKLTPNWEGPYRII 962
A Q + + V +VGD V W L P W+GPY ++
Sbjct: 186 PLAAAYQE---QLDRPVVPHPYRVGDTV--WVRRHQTKNLEPRWKGPYTVL 231
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.336 0.143 0.468
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,495,122
Number of Sequences: 164201
Number of extensions: 4144708
Number of successful extensions: 15283
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 15089
Number of HSP's gapped (non-prelim): 154
length of query: 993
length of database: 59,974,054
effective HSP length: 120
effective length of query: 873
effective length of database: 40,269,934
effective search space: 35155652382
effective search space used: 35155652382
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0590c.10