Lotus
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0590a.3
         (270 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl...   498  e-141
CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ...   474  e-133
CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla...   369  e-102
CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl...   365  e-101
CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl...   364  e-100
CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop...   364  e-100
CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ...   363  e-100
CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl...   362  e-100
CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla...   362  e-100
CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl...   361  e-100
CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl...   361  1e-99
CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast...   361  1e-99
CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla...   360  3e-99
CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla...   360  3e-99
CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl...   360  3e-99
CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl...   359  3e-99
CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop...   359  4e-99
CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl...   358  6e-99
CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast...   358  6e-99
CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla...   358  6e-99

>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast
           precursor (LHCII type III CAB-13)
          Length = 265

 Score =  498 bits (1281), Expect = e-141
 Identities = 239/263 (90%), Positives = 252/263 (94%), Gaps = 2/263 (0%)

Query: 8   ATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQ 67
           A TASS TV+K +PFLGQTK  N+N LRDVV+MG+ ++TM NDLWYGPDRVKYLGPFSAQ
Sbjct: 5   AATASSTTVVKATPFLGQTK--NANPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPFSAQ 62

Query: 68  TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRV 127
           TPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCI PEVLEKWV+V
Sbjct: 63  TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKV 122

Query: 128 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVG 187
           DFKEPVWFKAGSQIFS+GGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLPGVG
Sbjct: 123 DFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVG 182

Query: 188 EGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 247
           EGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL
Sbjct: 183 EGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242

Query: 248 LDHLDDPVANNAWVYATKFVPGS 270
           LDHLD+PVANNAWVYATKFVPG+
Sbjct: 243 LDHLDNPVANNAWVYATKFVPGA 265


>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type
           III, chloroplast precursor (CAB)
          Length = 268

 Score =  474 bits (1219), Expect = e-133
 Identities = 229/271 (84%), Positives = 248/271 (91%), Gaps = 4/271 (1%)

Query: 1   MAATLMAATTASSGTVIKPSPFL-GQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MA+T+MAA   +S  V+  +PFL GQ + ++++ LRD+ +   G+ TMGNDLWYGPDRVK
Sbjct: 1   MASTIMAA---ASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVK 57

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGC+ PE
Sbjct: 58  YLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPE 117

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           VL+KWV V+FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR
Sbjct: 118 VLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 177

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           INGL GVGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 178 INGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 237

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPGS 270
           GKGPLENL DHLDDPVANNAWV+ATKF PGS
Sbjct: 238 GKGPLENLFDHLDDPVANNAWVFATKFAPGS 268


>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast
           precursor (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score =  369 bits (946), Expect = e-102
 Identities = 189/262 (72%), Positives = 209/262 (79%), Gaps = 12/262 (4%)

Query: 17  IKPSPFLGQTKGSNSNT-LRDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSAQT 68
           I+ S F+GQ  G + N  +R V + G G+ TM          +WYG DR KYLGPFS QT
Sbjct: 6   IQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQT 65

Query: 69  PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
           PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   V 
Sbjct: 66  PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVK 124

Query: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGVGE 188
           F E VWFKAGSQIFSEGGLDYLGNPNLVHAQSILA+   QV+LMG VEG+R+ G P +GE
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP-LGE 183

Query: 189 G-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 247
           G + +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL
Sbjct: 184 GLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242

Query: 248 LDHLDDPVANNAWVYATKFVPG 269
            DH++DPVANNAW YAT FVPG
Sbjct: 243 SDHINDPVANNAWAYATNFVPG 264


>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast
           precursor (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score =  365 bits (938), Expect = e-101
 Identities = 189/264 (71%), Positives = 208/264 (78%), Gaps = 12/264 (4%)

Query: 15  TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
           + I+ S F GQT   + N L R + S   G+ TM          +WYG DR KYLGPFS 
Sbjct: 4   SAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSE 63

Query: 67  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
           QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   
Sbjct: 64  QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NG 122

Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
           V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILAV   QV+LMGL+EG+R+ G P +
Sbjct: 123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP-L 181

Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
           GEG + +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
           NL DH+ DPVANNAW YAT FVPG
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPG 264


>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast
           precursor (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score =  364 bits (935), Expect = e-100
 Identities = 188/264 (71%), Positives = 208/264 (78%), Gaps = 12/264 (4%)

Query: 15  TVIKPSPFLGQTKGSNSNTL-RDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
           + I+ S F GQT   + N L R + S G G+ TM          +WYG DR KYLGPFS 
Sbjct: 4   SAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSE 63

Query: 67  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
           QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L K   
Sbjct: 64  QTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NG 122

Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
           V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+R+ G P +
Sbjct: 123 VTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP-L 181

Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
           GEG + +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDKIYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
           NL DH+ DPVANNAW +AT FVPG
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPG 264


>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151,
           chloroplast precursor (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score =  364 bits (934), Expect = e-100
 Identities = 189/264 (71%), Positives = 208/264 (78%), Gaps = 12/264 (4%)

Query: 15  TVIKPSPFLGQTKGSNSNTLR-DVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFSA 66
           + I+ S F GQT    SN L   + ++G G+ +M          +WYGPDR KYLGPFS 
Sbjct: 4   SAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSD 63

Query: 67  QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVR 126
           Q PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L K   
Sbjct: 64  QIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK-NG 122

Query: 127 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPGV 186
           V F E VWFKAGSQIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+R+ G P +
Sbjct: 123 VKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP-L 181

Query: 187 GEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 245
           GEG + +YPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+E
Sbjct: 182 GEGLDPIYPGGA-FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 246 NLLDHLDDPVANNAWVYATKFVPG 269
           NL DHL DPVANNAW YAT FVPG
Sbjct: 241 NLFDHLADPVANNAWAYATNFVPG 264


>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type
           I, chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score =  363 bits (931), Expect = e-100
 Identities = 186/265 (70%), Positives = 208/265 (78%), Gaps = 11/265 (4%)

Query: 13  SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGN-------DLWYGPDRVKYLGPFS 65
           + + I+ S F GQT     + L   V +  G+++M          +WYG DR K+LGPFS
Sbjct: 2   AASAIQSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFS 61

Query: 66  AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWV 125
            QTPSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGCI PE+L K  
Sbjct: 62  EQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSK-N 120

Query: 126 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLPG 185
            V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QV+LMGL+EG+R+ G P 
Sbjct: 121 GVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGP- 179

Query: 186 VGEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 244
           +GEG + LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 LGEGLDPLYPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238

Query: 245 ENLLDHLDDPVANNAWVYATKFVPG 269
           ENL DH+ DPVANNAW +AT FVPG
Sbjct: 239 ENLADHIADPVANNAWAFATNFVPG 263


>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast
           precursor (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score =  362 bits (929), Expect = e-100
 Identities = 188/270 (69%), Positives = 208/270 (76%), Gaps = 5/270 (1%)

Query: 1   MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MAA+ MA ++ S +G  +K SP   +  G+   T+R   S    K       WYGPDRVK
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKA--KTVSSGSPWYGPDRVK 58

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 59  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 119 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           + G P     + LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 178 VAGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           GKGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266


>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast
           precursor (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score =  362 bits (929), Expect = e-100
 Identities = 187/269 (69%), Positives = 206/269 (76%), Gaps = 9/269 (3%)

Query: 2   AATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYL 61
           A+T+  ++TA +GT IK   F     G    T+R  V  G  K       WYGPDRVKYL
Sbjct: 3   ASTMAISSTAMAGTPIKVGSF-----GEGRITMRKTV--GKPKVAASGSPWYGPDRVKYL 55

Query: 62  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 121
           GPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 56  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 115

Query: 122 EKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 181
            +   V F E VWFKAGSQIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI 
Sbjct: 116 SR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA 174

Query: 182 GLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 241
           G P     + LYPGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGK
Sbjct: 175 GGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 233

Query: 242 GPLENLLDHLDDPVANNAWVYATKFVPGS 270
           GPLENL DH+ DPV NNAW YAT FVPG+
Sbjct: 234 GPLENLADHIADPVNNNAWAYATNFVPGN 262


>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast
           precursor (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score =  361 bits (927), Expect = e-100
 Identities = 186/269 (69%), Positives = 206/269 (76%), Gaps = 4/269 (1%)

Query: 1   MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
           MAA+  A ++  +G  +K SP   +  G+   T+R   S    K       WYGPDRVKY
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKA--KPVSSGSPWYGPDRVKY 58

Query: 61  LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
           LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+
Sbjct: 59  LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118

Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
           L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+
Sbjct: 119 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177

Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
            G P     + LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTG
Sbjct: 178 AGGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236

Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPG 269
           KGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 237 KGPLENLADHLADPVNNNAWSYATNFVPG 265


>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast
           precursor (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score =  361 bits (926), Expect = 1e-99
 Identities = 185/268 (69%), Positives = 208/268 (77%), Gaps = 6/268 (2%)

Query: 2   AATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYL 61
           AAT+  ++ + +G  +K SP   +  G+   T+R  V+    K    +  WYGPDRVKYL
Sbjct: 3   AATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVA----KSAPSSSPWYGPDRVKYL 58

Query: 62  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 121
           GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 59  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118

Query: 122 EKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 181
            +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+RI 
Sbjct: 119 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA 177

Query: 182 GLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 241
           G P     + LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 178 GGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236

Query: 242 GPLENLLDHLDDPVANNAWVYATKFVPG 269
           GPLENL DHL DPV NNAW +AT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAFATNFVPG 264


>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast
           precursor (LHCII type I CAB) (LHCP)
          Length = 263

 Score =  361 bits (926), Expect = 1e-99
 Identities = 186/271 (68%), Positives = 209/271 (76%), Gaps = 11/271 (4%)

Query: 1   MAATLMAATTASSGTVIKPSPFLGQTKGSNSN-TLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MAA+ +  TT+  GT  +    + +   S    T+R  V            +WYGPDR K
Sbjct: 1   MAASALHQTTSFLGTAPRRDDVVRRVGDSGGRITMRRTVKSAP------QSIWYGPDRPK 54

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FA+NR LE+IH RWAMLGALGC+ PE
Sbjct: 55  YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPE 114

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L K   V F E VWFKAG+QIFSEGGLDYLGNPNLVHAQSILA+   QV+LMG VEG+R
Sbjct: 115 ILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR 173

Query: 180 INGLPGVGEG-NNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIV 238
           + G P +GEG + +YPGG  FDPLGLADDP TFAELKVKE+KNGRLAMFSMFGFFVQAIV
Sbjct: 174 VGGGP-LGEGLDKVYPGGA-FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIV 231

Query: 239 TGKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           TGKGP+ENL DH+ DPVANNAW YAT FVPG
Sbjct: 232 TGKGPIENLFDHVTDPVANNAWSYATNFVPG 262


>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast
           precursor (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score =  360 bits (923), Expect = 3e-99
 Identities = 182/268 (67%), Positives = 206/268 (75%), Gaps = 4/268 (1%)

Query: 2   AATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYL 61
           A+T+  ++ + +G  +K SP   +  G+    +R  V+    K       WYGPDRVKYL
Sbjct: 3   ASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKA--KPVSSGSPWYGPDRVKYL 60

Query: 62  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 121
           GPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 122 EKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 181
            +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG +EG+R+ 
Sbjct: 121 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA 179

Query: 182 GLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 241
           G P     + LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GGPLGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238

Query: 242 GPLENLLDHLDDPVANNAWVYATKFVPG 269
           GPL+NL+DHL DPV NNAW YAT FVPG
Sbjct: 239 GPLDNLVDHLADPVNNNAWAYATNFVPG 266


>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast
           precursor (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score =  360 bits (923), Expect = 3e-99
 Identities = 184/269 (68%), Positives = 206/269 (76%), Gaps = 4/269 (1%)

Query: 1   MAATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKY 60
           MAA+  A ++  +G  +K SP   +  G+   T+R   +    K       WYGPDRVKY
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKA--KPVSSGSPWYGPDRVKY 58

Query: 61  LGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEV 120
           LGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+
Sbjct: 59  LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118

Query: 121 LEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI 180
           L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+
Sbjct: 119 LAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRV 177

Query: 181 NGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240
            G P     + LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQA+VTG
Sbjct: 178 AGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTG 236

Query: 241 KGPLENLLDHLDDPVANNAWVYATKFVPG 269
           KGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 237 KGPLENLADHLADPVNNNAWSYATNFVPG 265


>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast
           precursor (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score =  360 bits (923), Expect = 3e-99
 Identities = 184/268 (68%), Positives = 208/268 (76%), Gaps = 6/268 (2%)

Query: 2   AATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYL 61
           AAT+  ++ + +G  +K SP   +  G+   ++R  V+    K    +  WYGPDRVKYL
Sbjct: 3   AATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVA----KPVASSSPWYGPDRVKYL 58

Query: 62  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 121
           GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 59  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 118

Query: 122 EKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 181
            +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ 
Sbjct: 119 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 177

Query: 182 GLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 241
           G P     + LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 178 GGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236

Query: 242 GPLENLLDHLDDPVANNAWVYATKFVPG 269
           GPLENL DHL DPV NNAW YAT FVPG
Sbjct: 237 GPLENLADHLADPVNNNAWAYATNFVPG 264


>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast
           precursor (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score =  359 bits (922), Expect = 3e-99
 Identities = 184/268 (68%), Positives = 207/268 (76%), Gaps = 4/268 (1%)

Query: 2   AATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYL 61
           AAT+  ++++ +G  +K SP   +  G+   T+R  V+    K       WYGPDRVKYL
Sbjct: 3   AATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKA--KPLSSGSPWYGPDRVKYL 60

Query: 62  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 121
           GPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 122 EKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 181
            +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ 
Sbjct: 121 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179

Query: 182 GLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 241
           G P     + LYPGG  FDPLGLA+DP  FAELKVK IKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GGPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGK 238

Query: 242 GPLENLLDHLDDPVANNAWVYATKFVPG 269
           GPLENL DHL DPV NNAW YAT FVPG
Sbjct: 239 GPLENLADHLADPVNNNAWSYATNFVPG 266


>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R,
           chloroplast precursor (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score =  359 bits (921), Expect = 4e-99
 Identities = 185/268 (69%), Positives = 205/268 (76%), Gaps = 4/268 (1%)

Query: 2   AATLMAATTASSGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVKYL 61
           AAT+  ++ + +G  +K SP   +  G+   T+R  V+    K       WYGPDRVKYL
Sbjct: 3   AATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKA--KPVSSGSPWYGPDRVKYL 60

Query: 62  GPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVL 121
           GPFS + PSYLTGEFPGDYGWDTA LSADPE FAKNR LEVIH RWAMLGALGC+ PE+L
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 122 EKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN 181
            +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R+ 
Sbjct: 121 AR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA 179

Query: 182 GLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 241
           G P     + LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGK
Sbjct: 180 GGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 238

Query: 242 GPLENLLDHLDDPVANNAWVYATKFVPG 269
           GPLENL DHL DPV NNAW YAT FVPG
Sbjct: 239 GPLENLADHLADPVNNNAWSYATNFVPG 266


>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast
           precursor (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score =  358 bits (920), Expect = 6e-99
 Identities = 186/270 (68%), Positives = 208/270 (76%), Gaps = 5/270 (1%)

Query: 1   MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MA + MA ++++ +G  +K SP   +  G+   T+R   +    K       WYGPDRVK
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKA--KPASSGSPWYGPDRVK 58

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 59  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 119 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           I G P     + LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 178 IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           GKGPLENL DHL DPV NNAW +AT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAFATNFVPG 266


>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast
           precursor (LHCII type I CAB) (LHCP)
          Length = 267

 Score =  358 bits (920), Expect = 6e-99
 Identities = 187/270 (69%), Positives = 207/270 (76%), Gaps = 5/270 (1%)

Query: 1   MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MA++ MA ++ S +G  +K  P   +  G    T+R     G  K    +  WYGPDRVK
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTA--GKPKTVQSSSPWYGPDRVK 58

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 59  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L +   V F E VWFKAGSQIFSEGGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 119 LLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYR 177

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           I G P     + LYPGG  FDPLGLADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 178 IAGGPLGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           GKGPLENL DHL DPV NNAW +AT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWNFATNFVPG 266


>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast
           precursor (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score =  358 bits (920), Expect = 6e-99
 Identities = 185/270 (68%), Positives = 209/270 (76%), Gaps = 5/270 (1%)

Query: 1   MAATLMAATTAS-SGTVIKPSPFLGQTKGSNSNTLRDVVSMGTGKYTMGNDLWYGPDRVK 59
           MAA+ MA +++S +G  +K SP   +  G+   T+R   S    K    +  WYGP+RVK
Sbjct: 1   MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKA--KPVSSSSPWYGPNRVK 58

Query: 60  YLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPE 119
           YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+ PE
Sbjct: 59  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 118

Query: 120 VLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFR 179
           +L +   V F E VWFK GSQIFS+GGLDYLGNP+LVHAQSILA+   QV+LMG VEG+R
Sbjct: 119 LLAR-NGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 177

Query: 180 INGLPGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVT 239
           + G P     + LYPGG  FDPLGLA+DP  FAELKVKEIKNGRLAMFSMFGFFVQAIVT
Sbjct: 178 VAGEPLGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236

Query: 240 GKGPLENLLDHLDDPVANNAWVYATKFVPG 269
           GKGPLENL DHL DPV NNAW YAT FVPG
Sbjct: 237 GKGPLENLADHLADPVNNNAWAYATNFVPG 266


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.139    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,850,558
Number of Sequences: 164201
Number of extensions: 1667944
Number of successful extensions: 3618
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3173
Number of HSP's gapped (non-prelim): 165
length of query: 270
length of database: 59,974,054
effective HSP length: 108
effective length of query: 162
effective length of database: 42,240,346
effective search space: 6842936052
effective search space used: 6842936052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)


Lotus: description of TM0590a.3