BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0588b.2
         (157 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SPR4_CAEEL (O17582) Suppressor of presenilin protein 4                 32  0.58
YJD1_SCHPO (O74504) Hypothetical protein C594.01 in chromosome III     30  2.9
RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L...    28  6.4
ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens...    28  8.4

>SPR4_CAEEL (O17582) Suppressor of presenilin protein 4
          Length = 1311

 Score = 32.0 bits (71), Expect = 0.58
 Identities = 14/38 (36%), Positives = 19/38 (49%), Gaps = 5/38 (13%)

Query: 88  LFFCSFTWPDKTPS-----RHYFDVYDQDRDSCKFCSW 120
           +FFC    P K P+     RHY   +  D   C++CSW
Sbjct: 583 VFFCCNMCPYKAPTMNRCQRHYDKHFKNDEFKCQYCSW 620


>YJD1_SCHPO (O74504) Hypothetical protein C594.01 in chromosome III
          Length = 791

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/46 (34%), Positives = 24/46 (51%), Gaps = 3/46 (6%)

Query: 25  VTFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHTLNHG 70
           V  +I  P +TV  + D P PP+  P T    + +DDL I + + G
Sbjct: 198 VQTNIVTPPITVTAVPDSPNPPAATPATV---ADNDDLSIVSSDSG 240


>RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L
            protein)
          Length = 2149

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/32 (43%), Positives = 20/32 (61%)

Query: 33   KVTVEIINDLPQPPSTIPLTFHCKSKDDDLGI 64
            +V +EI ND+ QPP    +T +C+S   DL I
Sbjct: 1742 QVHLEIENDIGQPPRLRNVTTNCQSSPWDLSI 1773


>ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens 1
            protein) (Zona occludens 1 protein) (Tight junction
            protein 1)
          Length = 1736

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 18/48 (37%), Positives = 27/48 (55%), Gaps = 2/48 (4%)

Query: 21   FDTGV-TFSIFPPKVTVEIINDLPQPPSTIPLTFHCKSKDDDLGIHTL 67
            FD+GV TFSI   K   +I N++   P  IP++     +D+D   HT+
Sbjct: 1574 FDSGVETFSIHAEKPKYQI-NNISTVPKAIPVSPSAVEEDEDEDGHTV 1620


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.327    0.141    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,406,237
Number of Sequences: 164201
Number of extensions: 864858
Number of successful extensions: 2005
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2004
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 59,974,054
effective HSP length: 101
effective length of query: 56
effective length of database: 43,389,753
effective search space: 2429826168
effective search space used: 2429826168
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)