BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0587.12
         (583 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YG3H_YEAST (P53285) Hypothetical 54.5 kDa protein in CBF2-SKN1 i...    50  2e-05
SYD_ARCFU (O29342) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...    33  2.7
FNBA_STAAU (P14738) Fibronectin-binding protein precursor (FNBP)       32  4.6
GLGB_BIFLO (Q8G5L0) 1,4-alpha-glucan branching enzyme (EC 2.4.1....    32  6.0

>YG3H_YEAST (P53285) Hypothetical 54.5 kDa protein in CBF2-SKN1
           intergenic region
          Length = 467

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 57/246 (23%), Positives = 88/246 (35%), Gaps = 49/246 (19%)

Query: 374 GGTFTDLAMWVFCPFN-GPSTLKFGITSIAFSKVGEHVGDWEHFTLRICNFSGELWSIYF 432
           G  + D   + F PFN GP  +  G         G HVGDWEH  +R   + GE   ++ 
Sbjct: 196 GNGWVDAFWFYFYPFNWGPYIMGSG-------PWGNHVGDWEHSLVRF--YKGEPQYLWM 246

Query: 433 SQHSGGKWVDSYDLEYING-------------NKAIVYSSKSGHASFPHPGTYIQGSSKL 479
           S H GG       +E I                K +++S++  HA +   G +       
Sbjct: 247 SAHGGGSAYKFEAIEKIKRLRRVDGKLTNEVIKKPLIFSARGTHAHYASVGQHAHDVPFF 306

Query: 480 GIGIRNDACSSNLYVDSSIQ---YEIVAAEYLGDVVREP-----QWLQYMREWGP----- 526
            + + +      L+ D S+    Y +   E +     E      +WL +   WG      
Sbjct: 307 FMPLSDFTDRGPLW-DPSLNYYAYTVTVGEKMTPCGAEETKMGLEWLSFKGAWGDKQLRP 365

Query: 527 ------------KIVYGSKTELDKIINALPFRLRISFVNLVKKLPVELYGEEGPTGPKEK 574
                       K + G K  L K +  +    R  + N  K  P   Y + G     EK
Sbjct: 366 RDPRQKWCPFQWKYIDGPKGPLFKNMERVSLCQRFKWWNFWKGCPARRYIKRGEGLDAEK 425

Query: 575 NNWIGD 580
           N+ +GD
Sbjct: 426 NDLVGD 431


>SYD_ARCFU (O29342) Aspartyl-tRNA synthetase (EC 6.1.1.12)
           (Aspartate--tRNA ligase) (AspRS)
          Length = 430

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 197 VRADLTDKCEPYRQILDVSSEIPEFPF 223
           V  D+ +KCE Y   L+VS EIPE PF
Sbjct: 251 VYEDVAEKCERYLGWLEVSLEIPELPF 277


>FNBA_STAAU (P14738) Fibronectin-binding protein precursor (FNBP)
          Length = 1018

 Score = 32.0 bits (71), Expect = 4.6
 Identities = 33/148 (22%), Positives = 58/148 (38%), Gaps = 13/148 (8%)

Query: 437 GGKWVDSY-------DLEYINGNKAIVYSSKSGHASFPHPGTYIQGSSKLG-IGIRNDAC 488
           GG +VD Y       D   I+ +      S++GH      G Y + S +   I       
Sbjct: 563 GGGYVDGYIETIEETDSSAIDIDYHTAVDSEAGHV-----GGYTESSEESNPIDFEESTH 617

Query: 489 SSNLYVDSSIQYEIVAAEYLGDVVREPQWLQYMREWGPKIVYGSKTELDKIINALPFRLR 548
            ++ +    ++YE       G V  E   +++  E    IV G+ ++   + +   +   
Sbjct: 618 ENSKHHADVVEYEEDTNPGGGQVTTESNLVEFDEESTKGIVTGAVSDHTTVEDTKEYTTE 677

Query: 549 ISFVNLVKKLPVELYGEEGPTGPKEKNN 576
            + + LV +LP E    +GP     KNN
Sbjct: 678 SNLIELVDELPEEHGQAQGPVEEITKNN 705


>GLGB_BIFLO (Q8G5L0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18)
           (Glycogen branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 737

 Score = 31.6 bits (70), Expect = 6.0
 Identities = 47/181 (25%), Positives = 70/181 (37%), Gaps = 29/181 (16%)

Query: 278 IHALIEHYGPTVYFHPEEVYLPSSV-------DW--FFSNRAMLFRKGVSTGEAIDAGGS 328
           ++A  EHY   +  H E VY   S+       DW      R+M   +    G+ +   G+
Sbjct: 525 VYAYSEHYVLPIS-HDEVVYGKGSLYGKMPGDDWQKLAGVRSMFAYQWAHPGKKLSFMGN 583

Query: 329 NLPIGGTNDGEFWIDLPCDDDDQREFVKH--GDLKGAKLYVHVKPALGGTFTDLA--MWV 384
            L   G  D +  ID  C +  +   V+    DL     +    PAL     D A   W+
Sbjct: 584 ELAQWGEWDHDASIDWDCLNWQEHRQVQTMVADLNA---FYKAHPALWSQDFDPAGFQWL 640

Query: 385 FCPFNGPSTLKFGITSIAFSKVGEHVGDWEHFTLRICNFSGELWSIY-FSQHSGGKWVDS 443
                  +TL F    +     GE +         + NFSGE WS Y  +  +GGKW + 
Sbjct: 641 TSDDADHNTLSF----LRIGTKGETLAV-------VVNFSGEAWSDYQVALPTGGKWTEV 689

Query: 444 Y 444
           +
Sbjct: 690 F 690


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.320    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,932,048
Number of Sequences: 164201
Number of extensions: 3592346
Number of successful extensions: 6677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6675
Number of HSP's gapped (non-prelim): 4
length of query: 583
length of database: 59,974,054
effective HSP length: 116
effective length of query: 467
effective length of database: 40,926,738
effective search space: 19112786646
effective search space used: 19112786646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)