BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0559.15
         (664 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I      40  0.015
APH1_DROME (Q9VQG2) Gamma-secretase subunit Aph-1 (Presenilin st...    40  0.020
FLIH_CAEEL (P34268) Flightless-I protein homolog                       34  1.1
YO91_CAEEL (P41842) Hypothetical protein T20B12.1 in chromosome III    34  1.4
POLB_MAIZE (P15718) Retrovirus-related Pol polyprotein from tran...    33  3.1
PA4A_CHICK (P49147) Cytosolic phospholipase A2 (cPLA2) (Phosphol...    32  7.0

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I
          Length = 1261

 Score = 40.4 bits (93), Expect = 0.015
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 425  TAMDIFFGMPQKNVVS----WNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLL 480
            TA++IF    + NV      +N ++  L       E  ++F++M+ SGL P  +T+  ++
Sbjct: 909  TALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVI 968

Query: 481  SACSHSGLVEMGRYYFGLMSSTFGISPDVAHYACMVDLLGRGGFLGE-AMSLIQKL---P 536
            +A    G   +    F  M +     P VA Y  M+    +  F  E A+    +L    
Sbjct: 969  NAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFEVQTMFNREKALFYYNRLCATD 1028

Query: 537  MKPDAVVWGALLGACKTFGNLEMGKQILKQLLEL 570
            ++P +  +  L+ A  T   + +G   +K +LEL
Sbjct: 1029 IEPSSHTYKLLMDAYGTLKPVNVGS--VKAVLEL 1060



 Score = 33.9 bits (76), Expect = 1.4
 Identities = 68/394 (17%), Positives = 151/394 (38%), Gaps = 54/394 (13%)

Query: 188  RLIRSARQVFDDISDRTL--VSW------NSMIVGYSKMGFSKEAILLFKEMQYLGVEAD 239
            R+   ++ ++  IS ++L   +W      ++MI+  S     K + L    M+ LG    
Sbjct: 828  RVFEHSKHLYRKISTKSLEKANWFMALILDAMILSSSFARQFKSSNLFCDNMKMLGYIPR 887

Query: 240  MFTLVGLLSVALRHGNLD-LGRFVHLYIVVA--GIEIDSIVTNALIDMYAKCGHLQYAET 296
              T   L++ + R G+ D     ++++       ++    + NA++    +         
Sbjct: 888  ASTFAHLINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWK 947

Query: 297  VFDRMLDRNV----VSWTCMINAYANHGLIDHALEIFDQMPVK-----NAVSWNSIISCH 347
            +F  M +  +    V++  +INA    G    A ++F +M  +         +N++I   
Sbjct: 948  LFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNYQPRVAPYNTMIQFE 1007

Query: 348  VQEGQHAE-AMELFCRMCVSGVMPDNATLVSILSSCSHMGDLALGK-------------- 392
            VQ   + E A+  + R+C + + P + T   ++ +   +  + +G               
Sbjct: 1008 VQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAYGTLKPVNVGSVKAVLELMERTDVP 1067

Query: 393  ------KAHDYICDNNITVSVTLCNSLMNMYAK--CGALQTAMDIFFGMPQKNVVSWNVI 444
                   A+ +I  N ++      +  MN  AK   G +Q   ++F    +  + +  ++
Sbjct: 1068 ILSMHYAAYIHILGNVVSDVQAATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIV 1127

Query: 445  IGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLLSACSHSGLVEMGRYYFGLMSSTFG 504
                       E I++   M+   +  +      L+   +  G++   RYYF L+     
Sbjct: 1128 -----------EGIQIVSDMKRYNVSLNAYIVNALIKGFTKVGMISKARYYFDLLECEGM 1176

Query: 505  ISPDVAHYACMVDLLGRGGFLGEAMSLIQKLPMK 538
               + + Y  MV          +AM ++++L  K
Sbjct: 1177 SGKEPSTYENMVRAYLSVNDGRKAMEIVEQLKRK 1210


>APH1_DROME (Q9VQG2) Gamma-secretase subunit Aph-1 (Presenilin
           stabilization factor)
          Length = 238

 Score = 40.0 bits (92), Expect = 0.020
 Identities = 33/125 (26%), Positives = 55/125 (43%), Gaps = 17/125 (13%)

Query: 154 SCWDVAVVHAQAIKLGMGSHVCVQNAFLSLYVACRLIRSARQVFDDISDRTLVSWNSMIV 213
           S W   +   + +  G+   VC Q AF   Y+  R++RS  Q    +++ T V+ N  I+
Sbjct: 50  SLWYALIPLKEFLAFGVVFSVCFQEAFR--YIIYRILRSTEQGLHAVAEDTRVTDNKHIL 107

Query: 214 GY-SKMGFSKEAILLFKEMQYLGVEADMFTLVGLLSVALRHGNLDLGRFVHLYIVVAGIE 272
            Y S +GF              G+ + MF LV +L+     G + L     L+ V +  +
Sbjct: 108 AYVSGLGF--------------GIISGMFALVNVLADMSGPGTMGLKGGTELFFVTSAAQ 153

Query: 273 IDSIV 277
             SI+
Sbjct: 154 ALSII 158


>FLIH_CAEEL (P34268) Flightless-I protein homolog
          Length = 1257

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 23 HTQTQITEITKTKLNSPTHQTLHCLLDQCSSLRQLKLLHAQIILHGLTGQILTLGKLLSF 82
          H   Q+T++T  KLN    + +   L +C++L  L++ H Q+I   + G++  L +L S 
Sbjct: 26 HDVEQMTQMTWLKLNDSKLEQVPDELSRCANLEHLQMAHNQLI--SVHGELSDLPRLRSV 83

Query: 83 CVHLGDLRYAHLLFD 97
           V   +L+ A +  D
Sbjct: 84 IVRDNNLKTAGIPTD 98


>YO91_CAEEL (P41842) Hypothetical protein T20B12.1 in chromosome III
          Length = 787

 Score = 33.9 bits (76), Expect = 1.4
 Identities = 19/81 (23%), Positives = 40/81 (48%), Gaps = 6/81 (7%)

Query: 504 GISPDVAHYACMVDLLGRGGFLGEAMSLIQKLPMKPDAVVWGALLGACKTFGNLEMGKQI 563
           G++P       +  +L   G   EA+ +++KL M      W  ++   K  G ++  + +
Sbjct: 374 GLTPFWQSSVLLAGILNSLGCTSEALLILEKLEM------WDGVIDCYKQLGQMDKAETL 427

Query: 564 LKQLLELGRYDSGLYVLLSNM 584
           +++L+E    DS L+V L ++
Sbjct: 428 IRRLIEQKPNDSMLHVYLGDI 448


>POLB_MAIZE (P15718) Retrovirus-related Pol polyprotein from
           transposon element BS1 (ORF 1) [Contains: Protease (EC
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Endonuclease]
          Length = 740

 Score = 32.7 bits (73), Expect = 3.1
 Identities = 14/39 (35%), Positives = 25/39 (63%)

Query: 439 VSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFT 477
           V+ N+++ AL + G   +A  + E+M+ +G FPD  T+T
Sbjct: 471 VAHNLLVQALFMDGRASDAYVVLEEMQNNGPFPDVFTYT 509


>PA4A_CHICK (P49147) Cytosolic phospholipase A2 (cPLA2)
           (Phospholipase A2 group IVA) [Includes: Phospholipase A2
           (EC 3.1.1.4) (Phosphatidylcholine 2-acylhydrolase);
           Lysophospholipase (EC 3.1.1.5)]
          Length = 748

 Score = 31.6 bits (70), Expect = 7.0
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 31/145 (21%)

Query: 385 MGDLALGKKAHDYICDNNIT-----VSVTLCNS--LMNMYAKCGA-----------LQTA 426
           +  L LG+K    +  NN+T     +S+ +C+S  L    A C             +  +
Sbjct: 109 ISSLKLGEKKEVQLTFNNVTEMTLELSLEVCSSTDLRFSMALCDEEKKFRQQRKDNIMQS 168

Query: 427 MDIFFGMPQKNVVSWNVIIGALALHGSGKEAIEMFEKMRASGLFPDEITFTGLLSACSHS 486
           M  F G      ++ +  +  +A+ GSG             G F   + F G++ A   S
Sbjct: 169 MKSFLGEENSKNLTTSRDVPVIAVLGSG-------------GGFRAMVGFAGVMKALYES 215

Query: 487 GLVEMGRYYFGLMSSTFGISPDVAH 511
           G+++   Y  GL  ST+ +S   +H
Sbjct: 216 GVLDCATYIAGLSGSTWYMSTLYSH 240


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.325    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,414,903
Number of Sequences: 164201
Number of extensions: 3055682
Number of successful extensions: 8345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8328
Number of HSP's gapped (non-prelim): 18
length of query: 664
length of database: 59,974,054
effective HSP length: 117
effective length of query: 547
effective length of database: 40,762,537
effective search space: 22297107739
effective search space used: 22297107739
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)