BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0546.10
         (175 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

DNJ1_MYCTU (P07881) Chaperone protein dnaJ1                            42  7e-04
RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X ...    41  0.001
HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)             40  0.003
DNAJ_MYCLE (Q02605) Chaperone protein dnaJ                             40  0.003
WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-W...    39  0.005
RXRB_RAT (P49743) Retinoic acid receptor RXR-beta (Retinoid X re...    39  0.005
RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun...    39  0.006
FXJ3_HUMAN (Q9UPW0) Forkhead box protein J3                            39  0.006
WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)     39  0.008
WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-W...    39  0.008
STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)            39  0.008
RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X ...    39  0.008
MEFC_HUMAN (Q06413) Myocyte-specific enhancer factor 2C                39  0.008
DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr...    39  0.008
ZBT4_HUMAN (Q9P1Z0) Zinc finger and BTB domain containing protei...    38  0.010
SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor ...    38  0.014
RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...    38  0.014
DNJ2_MYCTU (P63966) Chaperone protein dnaJ2                            38  0.014
DNJ2_MYCBO (P63967) Chaperone protein dnaJ2                            38  0.014
SERA_PLAFG (P13823) Serine-repeat antigen protein precursor (P12...    37  0.023

>DNJ1_MYCTU (P07881) Chaperone protein dnaJ1
          Length = 395

 Score = 42.0 bits (97), Expect = 7e-04
 Identities = 30/95 (31%), Positives = 43/95 (44%), Gaps = 17/95 (17%)

Query: 94  LDTQTLLATVSVLAAIALSLFLGLKGDPVPCERCAGNGGMK------CVFCN-DGKMKQE 146
           L+T+T L  V     +A+ L L     P PC  C G+G         C  CN  G + + 
Sbjct: 150 LETETELDFVEAAKGVAMPLRLT---SPAPCTNCHGSGARPGTSPKVCPTCNGSGVINRN 206

Query: 147 MGLI----DCKVCKGSGLIL---CKKCGGSGYSRR 174
            G       C  C+GSG I+   C++C G+G + R
Sbjct: 207 QGAFGFSEPCTDCRGSGSIIEHPCEECKGTGVTTR 241


>RXRB_MOUSE (P28704) Retinoic acid receptor RXR-beta (Retinoid X
           receptor beta) (MHC class I regulatory element binding
           protein H-2RIIBP)
          Length = 520

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 45/152 (29%), Positives = 56/152 (36%), Gaps = 22/152 (14%)

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPK 70
           P SSS  P S     SS     L+P +    P P PPPP  S FP +          PP 
Sbjct: 80  PDSSSPNPLSQGIRPSSPPGPPLTPSAP---PPPMPPPPLGSPFPVISSSMGSPGLPPPA 136

Query: 71  PPRL-----FMIIDPILLLNGFGGAGFYLDTQTLLATVSVLAAIALSLFLGLKGDPVPCE 125
           PP          I+  + L G GG+G   D +  +  V            GL   P P  
Sbjct: 137 PPGFSGPVSSPQINSTVSLPG-GGSGPPEDVKPPVLGVR-----------GLHCPPPP-- 182

Query: 126 RCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKG 157
              G G   C  C D    +  G+  C+ CKG
Sbjct: 183 GGPGAGKRLCAICGDRSSGKHYGVYSCEGCKG 214


>HME1_MOUSE (P09065) Homeobox protein engrailed-1 (Mo-En-1)
          Length = 401

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 23/62 (37%), Positives = 30/62 (48%)

Query: 12 LSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKP 71
          LS S  P +S SS S   S+ +SP  +   P  +P  P  +H P LP  P      PP P
Sbjct: 27 LSLSLSPGASGSSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPPPPPP 86

Query: 72 PR 73
          P+
Sbjct: 87 PQ 88



 Score = 36.2 bits (82), Expect = 0.039
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 13 SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPP-PPSKSHFPSLPRFPSKCRHKPPKP 71
          S  SL  S  +S SS +     P S    PQP+PP PP+    P L   P    H PP P
Sbjct: 25 SGLSLSLSPGASGSSGSDGDSVPVS----PQPAPPSPPAAPCLPPLAHHPHLPPHPPPPP 80

Query: 72 P 72
          P
Sbjct: 81 P 81



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 14/43 (32%), Positives = 17/43 (38%)

Query: 11 PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSH 53
          P+S    PPS  ++       H      H  P P PPPP   H
Sbjct: 47 PVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPPPPPPPQH 89


>DNAJ_MYCLE (Q02605) Chaperone protein dnaJ
          Length = 388

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 29/95 (30%), Positives = 42/95 (43%), Gaps = 17/95 (17%)

Query: 94  LDTQTLLATVSVLAAIALSLFLGLKGDPVPCERCAGNGGMK------CVFCN-DGKMKQE 146
           L+T+  L  V     +A+ L L     P PC  C G+G         C  CN  G + + 
Sbjct: 145 LETEADLDFVEAAKGVAMPLRLT---SPAPCTNCHGSGARPGISPKVCSTCNGSGVINRN 201

Query: 147 MGLI----DCKVCKGSGLIL---CKKCGGSGYSRR 174
            G       C  C+GSG I+   C++C G+G + R
Sbjct: 202 QGAFGFSEPCTECRGSGSIIEHPCEECKGTGVTTR 236


>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein
           (N-WASP)
          Length = 505

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 22/69 (31%), Positives = 30/69 (42%), Gaps = 7/69 (10%)

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPS-------PPPPSKSHFPSLPRFPSK 63
           P SS   PP +    +       +P ++   P PS       PPPP++ + P LP  PS 
Sbjct: 294 PHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVGAPPPPPNRMYPPPLPALPSS 353

Query: 64  CRHKPPKPP 72
               PP PP
Sbjct: 354 APSGPPPPP 362



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 35  PCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           P  S   P P PPPP   H    P  P++ R  PP PP
Sbjct: 280 PPPSRGGPPPPPPPP---HSSGPPPPPARGRGAPPPPP 314



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/53 (37%), Positives = 23/53 (42%), Gaps = 1/53 (1%)

Query: 19  PSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKP 71
           PSS+ S        LS   S + P P PPPP     P  P  PS   H+ P P
Sbjct: 351 PSSAPSGPPPPPPPLSVSGSVA-PPPPPPPPPPPGPPPPPGLPSDGDHQVPTP 402


>RXRB_RAT (P49743) Retinoic acid receptor RXR-beta (Retinoid X
           receptor beta) (Nuclear receptor coregulator 1)
           (Fragment)
          Length = 458

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 44/156 (28%), Positives = 58/156 (36%), Gaps = 29/156 (18%)

Query: 7   STLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRH 66
           S+ +PLS   +PPSS             P +  + P P PPPP  S FP +         
Sbjct: 21  SSPNPLSQG-IPPSSPPGP---------PHTPSAPPPPMPPPPLGSPFPVISSSMGSPGL 70

Query: 67  KPPKPPRL-----FMIIDPILLLNGFGGAGFYLDTQTLLATVSVLAAIALSLFLGLKGDP 121
            PP PP          I+  + L G GG+G   D +  +  V            GL   P
Sbjct: 71  PPPAPPGFSGPVSSPQINSTVSLPG-GGSGPPEDVKPPVLGVR-----------GLHCPP 118

Query: 122 VPCERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKG 157
            P     G G   C  C D    +  G+  C+ CKG
Sbjct: 119 PP--GGPGAGKRLCAICGDRSSGKHYGVYSCEGCKG 152


>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit
           (EC 2.7.7.6) (Fragment)
          Length = 902

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 28/66 (42%), Positives = 35/66 (52%), Gaps = 2/66 (3%)

Query: 5   SYSTLHPLSSSSLPPSSSSSSS-SSTSLHLSPCS-SHSLPQPSPPPPSKSHFPSLPRFPS 62
           SYS   P  S + P  S +S S S TS   SP S S+S   PS  P S S+ PS P F +
Sbjct: 832 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTFTN 891

Query: 63  KCRHKP 68
           K  ++P
Sbjct: 892 KYNYQP 897


>FXJ3_HUMAN (Q9UPW0) Forkhead box protein J3
          Length = 622

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 1   MATLSYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRF 60
           ++T  +S    LS+S     +++ S+S   + LS    H  PQPSP PP + H   LP+ 
Sbjct: 338 VSTHPHSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMH--PQPSPHPPHRPH--GLPQH 393

Query: 61  PSKCRHKPPKPPRLFMIIDP 80
           P +  H  P P +   +  P
Sbjct: 394 PQRSPHPAPHPQQHSQLQSP 413


>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)
          Length = 501

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 23/73 (31%), Positives = 31/73 (41%), Gaps = 7/73 (9%)

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPS-------PPPPSKSHFPSLPRFPSK 63
           P SS   PP +    +       +P ++   P PS       PPPP++ + P  P  PS 
Sbjct: 291 PHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPGVVVPPPPPNRMYPPPPPALPSS 350

Query: 64  CRHKPPKPPRLFM 76
               PP PP L M
Sbjct: 351 APSGPPPPPPLSM 363



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/61 (29%), Positives = 27/61 (43%), Gaps = 3/61 (4%)

Query: 9   LHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKP 68
           ++P    +LP S+ S       L ++  ++   P P PPPP     P  P  PS   H+ 
Sbjct: 339 MYPPPPPALPSSAPSGPPPPPPLSMAGSTAPPPPPPPPPPPGP---PPPPGLPSDGDHQV 395

Query: 69  P 69
           P
Sbjct: 396 P 396



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 35  PCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           P  S   P P PPPP   H    P  P++ R  PP PP
Sbjct: 277 PPPSRGGPPPPPPPP---HSSGPPPPPARGRGAPPPPP 311


>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein
           (N-WASP)
          Length = 505

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPS-------PPPPSKSHFPSLPRFPSK 63
           P SS   PP +    +       +P ++   P PS       PPPP++ + P  P  PS 
Sbjct: 294 PHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVEVPPPPPNRMYPPPPPALPSS 353

Query: 64  CRHKPPKPPRLFMIIDPI 81
               PP PP   + + P+
Sbjct: 354 APSGPPPPPPSVLGVGPV 371



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 35  PCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           P  S   P P PPPP   H    P  P++ R  PP PP
Sbjct: 280 PPPSRGGPPPPPPPP---HSSGPPPPPARGRGAPPPPP 314


>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)
          Length = 116

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 23/68 (33%), Positives = 31/68 (44%), Gaps = 9/68 (13%)

Query: 8  TLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLP----QPSPPPPSKSHFPSLPRFPSK 63
          T HP   SS  P S +++  + S H   CS    P     PSP PP+K      P+ P  
Sbjct: 12 TTHPHPHSSSRPQSHTNNQCACSHHCRSCSQAGHPSSSSSPSPGPPTKH-----PKTPMH 66

Query: 64 CRHKPPKP 71
           R+ P +P
Sbjct: 67 SRYSPSRP 74


>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X
           receptor beta)
          Length = 533

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 42/156 (26%), Positives = 55/156 (34%), Gaps = 19/156 (12%)

Query: 7   STLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRH 66
           S+ +PL     PPS        ++      S    P P PPPP  S FP +         
Sbjct: 86  SSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPVISSSMGSPGL 145

Query: 67  KPPKPPRL-----FMIIDPILLLNGFGGAGFYLDTQTLLATVSVLAAIALSLFLGLKGDP 121
            PP PP          I+  + L G GG+G   D +  +  V            GL   P
Sbjct: 146 PPPAPPGFSGPVSSPQINSTVSLPG-GGSGPPEDVKPPVLGVR-----------GLHCPP 193

Query: 122 VPCERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKG 157
            P     G G   C  C D    +  G+  C+ CKG
Sbjct: 194 PP--GGPGAGKRLCAICGDRSSGKHYGVYSCEGCKG 227


>MEFC_HUMAN (Q06413) Myocyte-specific enhancer factor 2C
          Length = 473

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 23/66 (34%), Positives = 34/66 (50%), Gaps = 11/66 (16%)

Query: 16  SLPPSSSSSSSSSTSLHLSPCSSHSLP---------QPSPPPPSKSHFPSLPRFPSKCRH 66
           ++PPS+ S   + TS HLS  S+ SLP         +P  PP  ++  PS  R+P   RH
Sbjct: 357 NMPPSALSQLGACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRDRTTTPS--RYPQHTRH 414

Query: 67  KPPKPP 72
           +  + P
Sbjct: 415 EAGRSP 420


>DRPL_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian
           atrophy protein)
          Length = 1185

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 30/70 (42%), Positives = 33/70 (46%), Gaps = 10/70 (14%)

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSS--HSLPQPSPPP--------PSKSHFPSLPRFPS 62
           SSSS   +SSSSSSSS+S    P S    S P   PPP        P K   PSLP    
Sbjct: 378 SSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAV 437

Query: 63  KCRHKPPKPP 72
             +  PP PP
Sbjct: 438 WSQGPPPPPP 447



 Score = 33.9 bits (76), Expect = 0.20
 Identities = 25/56 (44%), Positives = 30/56 (52%), Gaps = 7/56 (12%)

Query: 4   LSYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSH-FPSLP 58
           +SYS   P   +  P SSSS+SSSSTS    PCS    P PS  P    + FP +P
Sbjct: 551 VSYSQAGP---NGPPVSSSSNSSSSTSQGSYPCSH---PSPSQGPQGAPYPFPPVP 600



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 15/77 (19%)

Query: 8   TLHPLSSSSLPPSSSS---------SSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLP 58
           TL P S  SLPP+SSS          SSSS+S   +  SS S    + P P+    PS P
Sbjct: 351 TLAP-SPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYP 409

Query: 59  R-FPS----KCRHKPPK 70
             FP        ++PPK
Sbjct: 410 HSFPPPTSLSVSNQPPK 426


>ZBT4_HUMAN (Q9P1Z0) Zinc finger and BTB domain containing protein 4
           (KAISO-like zinc finger protein 1) (KAISO-L1)
          Length = 1013

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 24/50 (48%), Positives = 28/50 (56%)

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPS 62
           +SSS   SSSSSSSSS++   S  SS S P  SPP  S      LP  P+
Sbjct: 84  ASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPA 133



 Score = 38.1 bits (87), Expect = 0.010
 Identities = 32/84 (38%), Positives = 37/84 (43%), Gaps = 14/84 (16%)

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           ++SS   SSSSSSSSS+S   S  SS S P P+ PP S          P +    P  P 
Sbjct: 83  AASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASS---------PPRVLELPGVPA 133

Query: 73  RLF-----MIIDPILLLNGFGGAG 91
             F      I    L L G GG G
Sbjct: 134 AAFSDVLNFIYSARLALPGGGGDG 157



 Score = 35.8 bits (81), Expect = 0.051
 Identities = 22/49 (44%), Positives = 27/49 (54%)

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPR 59
           P  +++   SSSSSSSSS+S   S  SS S    S PPP+     S PR
Sbjct: 76  PNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPR 124



 Score = 30.8 bits (68), Expect = 1.7
 Identities = 23/57 (40%), Positives = 28/57 (48%), Gaps = 8/57 (14%)

Query: 2   ATLSYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLP 58
           A+ S S+    SSSS   SSSSSSSSS+    SP        P+  PP     P +P
Sbjct: 84  ASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASP--------PASSPPRVLELPGVP 132


>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor
           (SSG 185)
          Length = 485

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           ++S LPPS   ++SS       P    S   PSPPPPS S  P  P  P      PP PP
Sbjct: 225 NNSPLPPSPQPTASSRP-----PSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPP 279



 Score = 34.7 bits (78), Expect = 0.11
 Identities = 21/60 (35%), Positives = 24/60 (40%)

Query: 13  SSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           ++SS PPS   S    +    SP      P P PPPP     P  P  P      PP PP
Sbjct: 236 TASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPP 295



 Score = 31.6 bits (70), Expect = 0.97
 Identities = 21/58 (36%), Positives = 21/58 (36%)

Query: 15  SSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           S  PPS    S S       P      P PSPPPP     P  P  P      P KPP
Sbjct: 247 SPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPRKPP 304



 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/31 (45%), Positives = 14/31 (45%)

Query: 42  PQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           P P PPPP     P  P  PS     PP PP
Sbjct: 287 PPPPPPPPPSPSPPRKPPSPSPPVPPPPSPP 317



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 42  PQPSPPPPSKSHFPSLPRFPSKCRHKPPKPP 72
           P P PPPP     PS PR P      PP PP
Sbjct: 284 PPPPPPPPPPPPSPSPPRKPPS--PSPPVPP 312



 Score = 30.0 bits (66), Expect = 2.8
 Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 11  PLSSS---SLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHK 67
           P +SS   S PPS    S    S    P      P P PPPPS    P  P  P      
Sbjct: 235 PTASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPP 294

Query: 68  P-PKPPR 73
           P P PPR
Sbjct: 295 PSPSPPR 301



 Score = 29.6 bits (65), Expect = 3.7
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 16  SLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKP 71
           S PP S S           P      P P PPPP     P  P  PS  R KPP P
Sbjct: 252 SPPPPSPSPPPPPPPPPPPPPPPPPSPPPPPPPPPPPPPPPPPPSPSPPR-KPPSP 306



 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/61 (29%), Positives = 24/61 (38%)

Query: 12  LSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPPKP 71
           LS  ++ P   + ++S       P +S   P P P P   S  P  P  P      PP P
Sbjct: 212 LSGPNVNPIGPAPNNSPLPPSPQPTASSRPPSPPPSPRPPSPPPPSPSPPPPPPPPPPPP 271

Query: 72  P 72
           P
Sbjct: 272 P 272


>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6)
          Length = 1852

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 5    SYSTLHPLSSSSLPPSSSSSSS-SSTSLHLSPCS-SHSLPQPSPPPPSKSHFPSLPRF-P 61
            SYS   P  S + P  S +S S S TS   SP S S+S   PS  P S S+ PS PR+ P
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1677

Query: 62   SKCRHKPPKP 71
            +   + P  P
Sbjct: 1678 TSPTYSPTSP 1687



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 28/67 (41%), Positives = 33/67 (48%), Gaps = 6/67 (8%)

Query: 11   PLSSSSLPPSSS----SSSSSSTSLHLSPCS-SHSLPQPSPPPPSKSHFPSLPRF-PSKC 64
            P+S S  P S S    S S S TS   SP S S+S   PS  P S S+ PS P + PS  
Sbjct: 1607 PVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSP 1666

Query: 65   RHKPPKP 71
             + P  P
Sbjct: 1667 SYSPSSP 1673



 Score = 32.0 bits (71), Expect = 0.74
 Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 2/69 (2%)

Query: 5    SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCS-SHSLPQPSPPPPSKSHFPSLPRF-PS 62
            +YS   P  S + P   S    S +S   SP S ++S   PS  P S  + P+ P++ PS
Sbjct: 1695 TYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPS 1754

Query: 63   KCRHKPPKP 71
               + P  P
Sbjct: 1755 SPTYTPSSP 1763



 Score = 30.4 bits (67), Expect = 2.2
 Identities = 22/67 (32%), Positives = 31/67 (45%), Gaps = 4/67 (5%)

Query: 6    YSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRF-PSKC 64
            YS   P  S + P  S +S S S +   SP +  S   PS  P S S+ P+ P + P+  
Sbjct: 1575 YSPSSPQFSMTSPHYSPTSPSYSPT---SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSP 1631

Query: 65   RHKPPKP 71
             + P  P
Sbjct: 1632 SYSPTSP 1638



 Score = 29.3 bits (64), Expect = 4.8
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 5    SYSTLHPLSSSSLP---PSSSSSSSSSTSLHLSPCSSHSLPQPSPPPP-----SKSHFPS 56
            SYS   P  S + P   PSS + + SS + + +     S PQ SP  P     S S+ PS
Sbjct: 1736 SYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPS 1795

Query: 57   LPRFPSKCRHKPPKP 71
             P++        P P
Sbjct: 1796 SPQYSPTSPTYTPSP 1810


>DNJ2_MYCTU (P63966) Chaperone protein dnaJ2
          Length = 382

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 116 GLKGD--PVPCERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKGSGLIL---CKKCGGSG 170
           G  GD  P+PC+ C G G ++ V      + Q +    C  C+G G+++   C++C G G
Sbjct: 152 GTNGDSVPIPCDTCGGRGEVQTV--QRSLLGQMLTSRPCPTCRGVGVVIPDPCQQCMGDG 209

Query: 171 YSR 173
             R
Sbjct: 210 RIR 212


>DNJ2_MYCBO (P63967) Chaperone protein dnaJ2
          Length = 382

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 116 GLKGD--PVPCERCAGNGGMKCVFCNDGKMKQEMGLIDCKVCKGSGLIL---CKKCGGSG 170
           G  GD  P+PC+ C G G ++ V      + Q +    C  C+G G+++   C++C G G
Sbjct: 152 GTNGDSVPIPCDTCGGRGEVQTV--QRSLLGQMLTSRPCPTCRGVGVVIPDPCQQCMGDG 209

Query: 171 YSR 173
             R
Sbjct: 210 RIR 212


>SERA_PLAFG (P13823) Serine-repeat antigen protein precursor (P126)
           (111 kDa antigen)
          Length = 989

 Score = 37.0 bits (84), Expect = 0.023
 Identities = 24/46 (52%), Positives = 27/46 (58%)

Query: 5   SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPS 50
           S S+    SSSS   SSSSSSSSS+S   S  SS SLP   P  P+
Sbjct: 192 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESLPANGPDSPT 237



 Score = 32.7 bits (73), Expect = 0.44
 Identities = 27/61 (44%), Positives = 30/61 (48%), Gaps = 6/61 (9%)

Query: 11  PLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLP-RFPSKCRHKPP 69
           P+S SS   SSSSSSSSS+S      SS S    S    S S   SLP   P     KPP
Sbjct: 187 PISDSSSSSSSSSSSSSSSS-----SSSSSSSSSSSSSSSSSSSESLPANGPDSPTVKPP 241

Query: 70  K 70
           +
Sbjct: 242 R 242



 Score = 31.6 bits (70), Expect = 0.97
 Identities = 20/43 (46%), Positives = 23/43 (52%)

Query: 5   SYSTLHPLSSSSLPPSSSSSSSSSTSLHLSPCSSHSLPQPSPP 47
           S S+    SSSS   SSSSSSSSS+S    P +    P   PP
Sbjct: 199 SSSSSSSSSSSSSSSSSSSSSSSSSSSESLPANGPDSPTVKPP 241



 Score = 30.0 bits (66), Expect = 2.8
 Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 19  PSSSSSSSSSTSLHLSPCSSHSLPQPSPPPPSKSHFPSLPRFPSKCRHKPP-KPPR 73
           P S SSSSSS+S   S  SS S    S    S S   S    P+     P  KPPR
Sbjct: 187 PISDSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSESLPANGPDSPTVKPPR 242


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,065,041
Number of Sequences: 164201
Number of extensions: 1168154
Number of successful extensions: 15476
Number of sequences better than 10.0: 593
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 371
Number of HSP's that attempted gapping in prelim test: 10891
Number of HSP's gapped (non-prelim): 2931
length of query: 175
length of database: 59,974,054
effective HSP length: 103
effective length of query: 72
effective length of database: 43,061,351
effective search space: 3100417272
effective search space used: 3100417272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)