BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0544.2
(141 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
H2A_CICAR (O65759) Histone H2A 254 5e-68
H2A_PICAB (P35063) Histone H2A 245 3e-65
H2A4_VOLCA (P16866) Histone H2A-IV 202 2e-52
H2A_CHLRE (P50567) Histone H2A 201 3e-52
H2A3_VOLCA (P16865) Histone H2A-III 201 3e-52
H2A_PLAFA (P40282) Histone H2A 186 2e-47
H2A_NEUCR (Q8X132) Histone H2A 184 7e-47
H2A1_PSAMI (P04735) Late histone H2A.1 183 1e-46
H2A2_YEAST (P04912) Histone H2A.2 182 2e-46
H2A1_YEAST (P04911) Histone H2A.1 182 2e-46
H2A1_CANGA (Q6FWM7) Histone H2A.1 182 2e-46
H2A_MAIZE (P40280) Histone H2A 181 3e-46
H2A_EMENI (P08844) Histone H2A 181 3e-46
H2A2_PSAMI (P04736) Late histone H2A.2.1 181 4e-46
H2A2_CANGA (Q6FM31) Histone H2A.2 181 4e-46
H2A1_TETTH (P35064) Histone H2A.1 181 4e-46
H2A1_TETPY (P02273) Histone H2A.1 181 6e-46
H2A_ASPNG (O13413) Histone H2A 180 8e-46
H2A2_ASHGO (Q757L4) Histone H2A.2 180 1e-45
H2A_BOTCI (O74268) Histone H2A 179 1e-45
>H2A_CICAR (O65759) Histone H2A
Length = 139
Score = 254 bits (648), Expect = 5e-68
Identities = 133/141 (94%), Positives = 134/141 (94%), Gaps = 2/141 (1%)
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSST TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA
Sbjct: 1 MSSTA--TTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 58
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 59 VLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 118
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
TLLPKK GKGKGEIGSASQEF
Sbjct: 119 TLLPKKVGKGKGEIGSASQEF 139
>H2A_PICAB (P35063) Histone H2A
Length = 138
Score = 245 bits (625), Expect = 3e-65
Identities = 128/141 (90%), Positives = 133/141 (93%), Gaps = 3/141 (2%)
Query: 1 MSSTGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 60
MSS+G KGGRGK K+ KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+A
Sbjct: 1 MSSSGA---KGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAA 57
Query: 61 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 120
VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ
Sbjct: 58 VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQ 117
Query: 121 TLLPKKAGKGKGEIGSASQEF 141
LLPKK+GK KGEIGSASQEF
Sbjct: 118 VLLPKKSGKDKGEIGSASQEF 138
>H2A4_VOLCA (P16866) Histone H2A-IV
Length = 129
Score = 202 bits (513), Expect = 2e-52
Identities = 101/122 (82%), Positives = 109/122 (88%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+AVLEYL AEVLE
Sbjct: 5 GKGKTAGKKAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGK 131
LAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK+ GK
Sbjct: 65 LAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGK 124
Query: 132 GE 133
GE
Sbjct: 125 GE 126
>H2A_CHLRE (P50567) Histone H2A
Length = 129
Score = 201 bits (512), Expect = 3e-52
Identities = 101/122 (82%), Positives = 108/122 (87%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+AVLEYL AEVLE
Sbjct: 5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGK 131
LAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK GK
Sbjct: 65 LAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGK 124
Query: 132 GE 133
GE
Sbjct: 125 GE 126
>H2A3_VOLCA (P16865) Histone H2A-III
Length = 129
Score = 201 bits (512), Expect = 3e-52
Identities = 101/122 (82%), Positives = 109/122 (88%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAPVYL+AVLEYL AEVLE
Sbjct: 5 GKGKTAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLE 64
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGKGK 131
LAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK+ GK
Sbjct: 65 LAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGK 124
Query: 132 GE 133
GE
Sbjct: 125 GE 126
>H2A_PLAFA (P40282) Histone H2A
Length = 132
Score = 186 bits (471), Expect = 2e-47
Identities = 94/134 (70%), Positives = 111/134 (82%), Gaps = 3/134 (2%)
Query: 8 NTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 67
+ KG G+ KA+K S S KAGLQFPVGRI R+LK GKYA+RVGAGAPVYL+AVLEYL A
Sbjct: 2 SAKGKTGRKKASKGTSNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCA 61
Query: 68 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKA 127
E+LELAGNAARDNKK+RI PRHIQLAVRNDEEL+K L VT A+GGVLPNIH LLPKK+
Sbjct: 62 EILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKS 121
Query: 128 GKGKGEIGSASQEF 141
+ + G+A+Q++
Sbjct: 122 ---QLKAGTANQDY 132
>H2A_NEUCR (Q8X132) Histone H2A
Length = 133
Score = 184 bits (466), Expect = 7e-47
Identities = 99/138 (71%), Positives = 111/138 (79%), Gaps = 7/138 (5%)
Query: 4 TGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 63
TGG + G K A+S RS KAGL FPVGR+ R L+ G YA+RVGAGAPVYL+AVLE
Sbjct: 1 TGGGKSGGKASGSKNAQS--RSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLE 58
Query: 64 YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 123
YLAAE+LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LL
Sbjct: 59 YLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLL 118
Query: 124 PKKAGK-GKGEIGSASQE 140
PKK GK GK +ASQE
Sbjct: 119 PKKTGKTGK----NASQE 132
>H2A1_PSAMI (P04735) Late histone H2A.1
Length = 124
Score = 183 bits (464), Expect = 1e-46
Identities = 90/118 (76%), Positives = 100/118 (84%)
Query: 12 GRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLE 71
G+GK K KS +RS +AGLQFPVGR+ RFLK G Y RVGAGAPVYL+AVLEYL AE+LE
Sbjct: 4 GKGKAKGTKSKTRSSRAGLQFPVGRVHRFLKKGNYGSRVGAGAPVYLAAVLEYLTAEILE 63
Query: 72 LAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
LAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK K
Sbjct: 64 LAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 121
>H2A2_YEAST (P04912) Histone H2A.2
Length = 131
Score = 182 bits (462), Expect = 2e-46
Identities = 92/131 (70%), Positives = 107/131 (81%), Gaps = 4/131 (3%)
Query: 10 KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 69
KGG+ A S SRS KAGL FPVGR+ R L+ G YA+R+G+GAPVYL+AVLEYLAAE+
Sbjct: 4 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEI 63
Query: 70 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK+ K
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 123
Query: 130 GKGEIGSASQE 140
ASQE
Sbjct: 124 ----TAKASQE 130
>H2A1_YEAST (P04911) Histone H2A.1
Length = 131
Score = 182 bits (462), Expect = 2e-46
Identities = 92/131 (70%), Positives = 107/131 (81%), Gaps = 4/131 (3%)
Query: 10 KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 69
KGG+ A S SRS KAGL FPVGR+ R L+ G YA+R+G+GAPVYL+AVLEYLAAE+
Sbjct: 4 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEI 63
Query: 70 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK+ K
Sbjct: 64 LELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 123
Query: 130 GKGEIGSASQE 140
ASQE
Sbjct: 124 AT----KASQE 130
>H2A1_CANGA (Q6FWM7) Histone H2A.1
Length = 130
Score = 182 bits (462), Expect = 2e-46
Identities = 92/131 (70%), Positives = 109/131 (82%), Gaps = 5/131 (3%)
Query: 10 KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 69
KGG+ A S +RS KAGL FPVGR+ R L+ G YA+R+G+GAPVYL+AVLEYLAAE+
Sbjct: 4 KGGKAGSAAKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEI 63
Query: 70 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
LELAGNAARDNKK+RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK+ K
Sbjct: 64 LELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 123
Query: 130 GKGEIGSASQE 140
SASQE
Sbjct: 124 -----PSASQE 129
>H2A_MAIZE (P40280) Histone H2A
Length = 159
Score = 181 bits (460), Expect = 3e-46
Identities = 99/145 (68%), Positives = 110/145 (75%), Gaps = 11/145 (7%)
Query: 1 MSSTGGNNTKGGRGKPKAA---------KSVSRSQKAGLQFPVGRIARFLKAGKYAERVG 51
M STG GG+GK AA KSVSRS KAGLQFPVGRI R+LK G+YA+ VG
Sbjct: 1 MDSTGTG--AGGKGKKGAAGRKVGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVG 58
Query: 52 AGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAN 111
GAPVYL+AVLEYLAAEVLELAGNAARDNKK RI+PRH+ LA+RNDEEL KLLG VTIA+
Sbjct: 59 TGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAH 118
Query: 112 GGVLPNIHQTLLPKKAGKGKGEIGS 136
GGVLPNI+ LLPKK + GS
Sbjct: 119 GGVLPNINPVLLPKKTAEKASSGGS 143
>H2A_EMENI (P08844) Histone H2A
Length = 131
Score = 181 bits (460), Expect = 3e-46
Identities = 98/135 (72%), Positives = 110/135 (80%), Gaps = 8/135 (5%)
Query: 4 TGGNNTKGGRGKPKAAKSV-SRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 62
TGG K G GK +K+ SRS KAGL FPVGR+ R L+ G YA+RVGAGAPVYL+AVL
Sbjct: 1 TGG---KSG-GKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVL 56
Query: 63 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 122
EYLAAE+LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ L
Sbjct: 57 EYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNL 116
Query: 123 LPK---KAGKGKGEI 134
LPK KAGKG E+
Sbjct: 117 LPKKTPKAGKGSQEL 131
>H2A2_PSAMI (P04736) Late histone H2A.2.1
Length = 123
Score = 181 bits (459), Expect = 4e-46
Identities = 93/120 (77%), Positives = 101/120 (83%), Gaps = 2/120 (1%)
Query: 12 GRGKPKAAKSV--SRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 69
GRGK AKS SRS +AGLQFPVGR+ RFLK G Y RVGAGAPVYL+AVLEYL AE+
Sbjct: 2 GRGKGAKAKSKAKSRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEI 61
Query: 70 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK GK
Sbjct: 62 LELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKTGK 121
>H2A2_CANGA (Q6FM31) Histone H2A.2
Length = 130
Score = 181 bits (459), Expect = 4e-46
Identities = 92/131 (70%), Positives = 109/131 (82%), Gaps = 5/131 (3%)
Query: 10 KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 69
KGG+ A S +RS KAGL FPVGR+ R L+ G YA+R+G+GAPVYL+AVLEYLAAE+
Sbjct: 4 KGGKVGSAAKASQTRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEI 63
Query: 70 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
LELAGNAARDNKK+RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK+ K
Sbjct: 64 LELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 123
Query: 130 GKGEIGSASQE 140
SASQE
Sbjct: 124 -----PSASQE 129
>H2A1_TETTH (P35064) Histone H2A.1
Length = 137
Score = 181 bits (459), Expect = 4e-46
Identities = 98/141 (69%), Positives = 115/141 (81%), Gaps = 7/141 (4%)
Query: 2 SSTGGNNTKGGRGKPKAA--KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 59
S+TG KGG+ K K A K VSRS +AGLQFPVGRI+RFLK G+Y+ERVG GAPVYL+
Sbjct: 1 STTG----KGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLA 56
Query: 60 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 119
AVLEYLAAEVLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+
Sbjct: 57 AVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNIN 116
Query: 120 QTLLPKKAGKGKGEIGSASQE 140
LLP K+ K + G ASQ+
Sbjct: 117 PMLLPSKSKKTESR-GQASQD 136
>H2A1_TETPY (P02273) Histone H2A.1
Length = 137
Score = 181 bits (458), Expect = 6e-46
Identities = 97/141 (68%), Positives = 115/141 (80%), Gaps = 7/141 (4%)
Query: 2 SSTGGNNTKGGRGKPKAA--KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 59
S+TG KGG+ K K A K VSRS +AGLQFPVGRI+RFLK G+Y+ER+G GAPVYL+
Sbjct: 1 STTG----KGGKAKGKTASSKQVSRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLA 56
Query: 60 AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 119
AVLEYLAAEVLELAGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+
Sbjct: 57 AVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNIN 116
Query: 120 QTLLPKKAGKGKGEIGSASQE 140
LLP K+ K + G ASQ+
Sbjct: 117 PMLLPSKSKKTESR-GQASQD 136
>H2A_ASPNG (O13413) Histone H2A
Length = 133
Score = 180 bits (457), Expect = 8e-46
Identities = 97/133 (72%), Positives = 109/133 (81%), Gaps = 8/133 (6%)
Query: 4 TGGNNTKGGRGKPKAAKSV-SRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 62
TGG K G GK +K+ SRS KAGL FPVGR+ R L+ G YA+RVGAGAPVYL+AVL
Sbjct: 1 TGG---KSG-GKASGSKNAQSRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVL 56
Query: 63 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTL 122
EYLAAE+LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ L
Sbjct: 57 EYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNL 116
Query: 123 LPK---KAGKGKG 132
LPK K+GKG G
Sbjct: 117 LPKKTPKSGKGPG 129
>H2A2_ASHGO (Q757L4) Histone H2A.2
Length = 130
Score = 180 bits (456), Expect = 1e-45
Identities = 91/131 (69%), Positives = 106/131 (80%), Gaps = 4/131 (3%)
Query: 10 KGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEV 69
KGG+ A S SRS KAGL FPVGR+ R L+ G YA+R+G+GAPVYL+AVLEYLAAE+
Sbjct: 3 KGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEI 62
Query: 70 LELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKAGK 129
LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH LLPKK+ K
Sbjct: 63 LELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAK 122
Query: 130 GKGEIGSASQE 140
ASQE
Sbjct: 123 AT----KASQE 129
>H2A_BOTCI (O74268) Histone H2A
Length = 136
Score = 179 bits (455), Expect = 1e-45
Identities = 96/137 (70%), Positives = 108/137 (78%), Gaps = 2/137 (1%)
Query: 4 TGGNNTKGGRGKPKAAKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLE 63
TGG + G G K A+S KAGL FPVGR+ R L+ G YA+RVGAGAPVYL+AVLE
Sbjct: 1 TGGKSAGGKAGTTKNAQSRFHP-KAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLE 59
Query: 64 YLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLL 123
YLAAE+LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LL
Sbjct: 60 YLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLL 119
Query: 124 PKKAGKGKGEIGSASQE 140
PKK K G ASQE
Sbjct: 120 PKKTAKTAGG-KPASQE 135
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.312 0.132 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,381,905
Number of Sequences: 164201
Number of extensions: 638149
Number of successful extensions: 1457
Number of sequences better than 10.0: 131
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1315
Number of HSP's gapped (non-prelim): 132
length of query: 141
length of database: 59,974,054
effective HSP length: 99
effective length of query: 42
effective length of database: 43,718,155
effective search space: 1836162510
effective search space used: 1836162510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0544.2