BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0490.11
(418 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 318 2e-86
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 318 2e-86
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 318 2e-86
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 315 1e-85
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 313 4e-85
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 291 2e-78
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 267 4e-71
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 219 1e-56
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 211 3e-54
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 208 2e-53
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 204 3e-52
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 204 3e-52
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 204 3e-52
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 204 4e-52
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 198 2e-50
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 188 2e-47
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 183 8e-46
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 159 1e-38
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 156 1e-37
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 107 4e-23
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 318 bits (814), Expect = 2e-86
Identities = 170/418 (40%), Positives = 249/418 (58%), Gaps = 7/418 (1%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
+P + ++ ++L+ +I+P+KS AF VN +E+ R KKR+VV+Y+ +N+
Sbjct: 255 SPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATV 314
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
D + LP L + I+ IFS FD KSGFWQ+ LD + RP TAF P HY+W V+PF
Sbjct: 315 GDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPF 374
Query: 122 GLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLS 181
GLK APS+FQ+ M + F VY+DD+L+FS++EE H + C++HG++LS
Sbjct: 375 GLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILS 434
Query: 182 SRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFI 241
+K+Q+ K+++FLG+ EG PQ HI+E + KFPD KQ+Q+FLGIL Y D+I
Sbjct: 435 KKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYI 494
Query: 242 PHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASD 299
P +++ L L++N P W KE T ++ +KK Q PPL P + K I++TDASD
Sbjct: 495 PKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 300 HYWA----AVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGH 355
YW A+ I E +L C +ASG FK AE +YH+ KETLAV IK+F +L
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPV 614
Query: 356 HFEVQIDNSSFPKMLEFKNKTPPN-PQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
HF ++ DN+ F + K + +R + W S Y F V+H++G+ N D+LSR
Sbjct: 615 HFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 318 bits (814), Expect = 2e-86
Identities = 170/418 (40%), Positives = 249/418 (58%), Gaps = 7/418 (1%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
+P + ++ ++L+ +I+P+KS AF VN +E+ R KKR+VV+Y+ +N+
Sbjct: 255 SPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATI 314
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
D + LP L + I+ IFS FD KSGFWQ+ LD + RP TAF P HY+W V+PF
Sbjct: 315 GDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPF 374
Query: 122 GLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLS 181
GLK APS+FQ+ M + F VY+DD+L+FS++EE H + C++HG++LS
Sbjct: 375 GLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILS 434
Query: 182 SRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFI 241
+K+Q+ K+++FLG+ EG PQ HI+E + KFPD KQ+Q+FLGIL Y D+I
Sbjct: 435 KKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYI 494
Query: 242 PHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASD 299
P +++ L L++N P W KE T ++ +KK Q PPL P + K I++TDASD
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 300 HYWA----AVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGH 355
YW A+ I E +L C +ASG FK AE +YH+ KETLAV IK+F +L
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPV 614
Query: 356 HFEVQIDNSSFPKMLEFKNKTPPN-PQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
HF ++ DN+ F + K + +R + W S Y F V+H++G+ N D+LSR
Sbjct: 615 HFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 318 bits (814), Expect = 2e-86
Identities = 170/418 (40%), Positives = 249/418 (58%), Gaps = 7/418 (1%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
+P + ++ ++L+ +I+P+KS AF VN +E+ R KKR+VV+Y+ +N+
Sbjct: 255 SPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATI 314
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
D + LP L + I+ IFS FD KSGFWQ+ LD + RP TAF P HY+W V+PF
Sbjct: 315 GDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPF 374
Query: 122 GLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLS 181
GLK APS+FQ+ M + F VY+DD+L+FS++EE H + C++HG++LS
Sbjct: 375 GLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILS 434
Query: 182 SRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFI 241
+K+Q+ K+++FLG+ EG PQ HI+E + KFPD KQ+Q+FLGIL Y D+I
Sbjct: 435 KKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYI 494
Query: 242 PHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASD 299
P +++ L L++N P W KE T ++ +KK Q PPL P + K I++TDASD
Sbjct: 495 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 554
Query: 300 HYWA----AVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGH 355
YW A+ I E +L C +ASG FK AE +YH+ KETLAV IK+F +L
Sbjct: 555 DYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPV 614
Query: 356 HFEVQIDNSSFPKMLEFKNKTPPN-PQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
HF ++ DN+ F + K + +R + W S Y F V+H++G+ N D+LSR
Sbjct: 615 HFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 672
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 315 bits (808), Expect = 1e-85
Identities = 169/418 (40%), Positives = 248/418 (58%), Gaps = 7/418 (1%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
+P + ++ ++L+ +I+P+KS AF VN +E+ R KKR+VV+Y+ +N+
Sbjct: 250 SPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATV 309
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
D + P L + I+ IFS FD KSGFWQ+ LD + RP TAF P HY+W V+PF
Sbjct: 310 GDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPF 369
Query: 122 GLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLS 181
GLK APS+FQ+ M + F VY+DD+L+FS++EE H + C++HG++LS
Sbjct: 370 GLKQAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILS 429
Query: 182 SRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFI 241
+K+Q+ K+++FLG+ EG PQ HI+E + KFPD KQ+Q+FLGIL Y D+I
Sbjct: 430 KKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYI 489
Query: 242 PHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASD 299
P +++ L L++N P W KE T ++ +KK Q PPL P + K I++TDASD
Sbjct: 490 PKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 549
Query: 300 HYWA----AVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGH 355
YW A+ I E +L C +ASG FK AE +YH+ KETLAV IK+F +L
Sbjct: 550 DYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPV 609
Query: 356 HFEVQIDNSSFPKMLEFKNKTPPN-PQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
HF ++ DN+ F + K + +R + W S Y F V+H++G+ N D+LSR
Sbjct: 610 HFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 667
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 313 bits (803), Expect = 4e-85
Identities = 167/418 (39%), Positives = 247/418 (58%), Gaps = 7/418 (1%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
+P + ++ ++L+ +I+P+KS AF VN +E R KR+VV+Y+ +N+
Sbjct: 256 SPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATV 315
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
D + LP L + I+ IFS FD KSGFWQ+ LD + RP TAF P HY+W V+PF
Sbjct: 316 GDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPF 375
Query: 122 GLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLS 181
GLK APS+FQ+ M + F VY+DD+++FS++EE H + C++HG++LS
Sbjct: 376 GLKQAPSIFQRHMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILS 435
Query: 182 SRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFI 241
+K+Q+ K+++FLG+ EG PQ HI+E + KFPD KQ+Q+FLGIL Y D+I
Sbjct: 436 KKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYI 495
Query: 242 PHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASD 299
P++++ L L++N P W KE T ++ +KK Q PPL P + K I++TDASD
Sbjct: 496 PNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASD 555
Query: 300 HYWA----AVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGH 355
YW A+ I E +L C + SG FK AE +YH+ KETLAV IK+F +L
Sbjct: 556 DYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPV 615
Query: 356 HFEVQIDNSSFPKMLEFKNKTPPN-PQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
HF ++ DN+ F + K + +R + W S Y F V+H++G+ N D+LSR
Sbjct: 616 HFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHYSFDVEHIKGTDNHFADFLSR 673
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 291 bits (745), Expect = 2e-78
Identities = 154/415 (37%), Positives = 241/415 (57%), Gaps = 4/415 (0%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
+P + ++ ++L+ GLI P+KS+ AF V +E+ R KKR+VV+Y+ +NQ
Sbjct: 248 SPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATI 307
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
D LP + L + ++ IFS FD KSGFWQ+ LD + + TAF P H+QW V+PF
Sbjct: 308 GDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPF 367
Query: 122 GLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLS 181
GLK APS+FQ+ M +VY+DD+++FS+ E H + I K+G++LS
Sbjct: 368 GLKQAPSIFQRHMQTALNGADKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILS 427
Query: 182 SRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFI 241
+K+ + ++++FLG+ +G PQ HI+E + KFPD K +Q+FLG+L Y +I
Sbjct: 428 KKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPDRLEDKKHLQRFLGVLTYAETYI 487
Query: 242 PHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDASD 299
P +++ L L+K+ W + ++ +K +KK + P L +P + I++TDASD
Sbjct: 488 PKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLGSFPKLYLPKPEDHLIIETDASD 547
Query: 300 HYWAAVL-IEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFE 358
+W VL +DG +L C ++SG FK AE +YH+ KE LAVK I +F +L F
Sbjct: 548 SFWGGVLKARALDGVELICRYSSGSFKQAEKNYHSNDKELLAVKQVITKFSAYLTPVRFT 607
Query: 359 VQIDNSSFPKMLEFKNK-TPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
V+ DN +F L K +++R + WFS Y F V+H++G KN++ D L+R
Sbjct: 608 VRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKYQFDVEHLEGVKNVLADCLTR 662
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 267 bits (682), Expect = 4e-71
Identities = 146/414 (35%), Positives = 233/414 (56%), Gaps = 5/414 (1%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
+PS+ + ++L++ +I+P+KS AF V +E+ R KKR+VV+Y+ +N+ K
Sbjct: 237 SPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATK 296
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
D LP L + ++ I+S FD KSG WQ+ LD + + TAF P HYQW V+PF
Sbjct: 297 GDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPF 356
Query: 122 GLKVAPSLFQKAMTKIF-EPILHTSLVYIDDVLLFSH-DEESHKKFLQQFYDICSKHGVM 179
GLK APS+F K VY+DD+L+FS+ + H + C K G++
Sbjct: 357 GLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGII 416
Query: 180 LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
LS +K+Q+ ++++FLG+ +G PQ HI+E + KFPD KQ+Q+FLGIL Y D
Sbjct: 417 LSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASD 476
Query: 240 FIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP-GDGKRILQTDA 297
+IP ++ L L++++ W ++ + +KK ++ P L P + K +++TDA
Sbjct: 477 YIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDA 536
Query: 298 SDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHF 357
S+ +W +L + + C +ASG FK AE +YH+ KE LAV IK+F +L F
Sbjct: 537 SEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRF 596
Query: 358 EVQIDNSSFPKMLEFKNK-TPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYL 410
++ DN +F + K +++R + W S YDF V+H+ G+KN+ D+L
Sbjct: 597 LIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQYDFDVEHIAGTKNVFADFL 650
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 219 bits (558), Expect = 1e-56
Identities = 134/410 (32%), Positives = 214/410 (51%), Gaps = 13/410 (3%)
Query: 10 QEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQV-RQKKRLVVDYRPLNQFIKDDKFPLP 68
+ + Q ++ QG+I + S + + V K+ + +QK R+V+DYR LN+ D+ P+P
Sbjct: 224 ESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIP 283
Query: 69 KIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPS 128
+ + + + F+ D+ GF Q+ +DP+ KTAF + HY++ +PFGLK AP+
Sbjct: 284 NMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPA 343
Query: 129 LFQKAMTKIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQI 187
FQ+ M I P+L+ LVY+DD+++FS + H + L ++ +K + L K +
Sbjct: 344 TFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEF 403
Query: 188 ATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKY 247
+E FLG T P P +E + K+P K+I+ FLG+ Y R FIP+ +
Sbjct: 404 LKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIP-TKPKEIKAFLGLTGYYRKFIPNFADI 462
Query: 248 TSKLSKMLRKN--APPWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRI-LQTDASDHYWAA 304
++K L+KN E A K LK P LK+P K+ L TDASD A
Sbjct: 463 AKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGA 522
Query: 305 VLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNS 364
VL + DG L + S + E++Y T KE LA+ + K F +L G HFE+ D+
Sbjct: 523 VLSQ--DGHPL--SYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQ 578
Query: 365 SFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSRPK 414
+ K+ PN ++ R + S +DF +K+++G +N + D LSR K
Sbjct: 579 PLSWLYRMKD---PNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIK 625
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 211 bits (537), Expect = 3e-54
Identities = 139/436 (31%), Positives = 226/436 (50%), Gaps = 32/436 (7%)
Query: 1 MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSE-------QVRQKKRLVVDY 53
+TP + A + L++ +I P++S+ TAF V +E + + K+R+V +Y
Sbjct: 1410 VTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNY 1469
Query: 54 RPLNQFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAH 113
+ LN+ + D++ LP I ++ S + + I+SKFD+KSGFWQ+ ++ + P TAF N
Sbjct: 1470 KLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKL 1529
Query: 114 YQWTVLPFGLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDIC 173
Y+W V+PFGLK AP++FQ+ M +F+ VYIDD+L+FS E H + L +C
Sbjct: 1530 YEWLVMPFGLKNAPAIFQRKMDNVFKGTEKFIAVYIDDILVFSETAEQHSQHLYTMLQLC 1589
Query: 174 SKHGVMLSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGL-TIKQIQQFLG 232
++G++LS K +I T E+DFLG K QPHI+ ++ F DE L T + ++ +LG
Sbjct: 1590 KENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLG 1649
Query: 233 ILNYIRDFIPHVSKYTSKL-SKMLRKNAPPWGKEQTEAIKFLKKAAQNPPPLKI-PGDGK 290
IL+Y R++I + K L KM E + ++ +K+ +N P L++ P D
Sbjct: 1650 ILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSF 1709
Query: 291 RILQTDASDHYWAAVLIEEID-----GQKLYCGHASGQFKDAELHYHTTFKETLAVKYGI 345
I++TD W AV ++ + C +ASG F + T E A +G+
Sbjct: 1710 IIIETDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIK---STIDAEIQAAIHGL 1766
Query: 346 KRFDFHLRGHHFEVQIDNSSFPKMLEFKNKTPPN-PQILRLKEWFSLYDF--------SV 396
+F + + I S +++F NKT N P +R W + DF +
Sbjct: 1767 DKFKIYYLDK--KELIIRSDCEAIIKFYNKTNENKPSRVR---WLTFSDFLTGLGITVTF 1821
Query: 397 KHVQGSKNLIPDYLSR 412
+H+ G N + D LSR
Sbjct: 1822 EHIDGKHNGLADALSR 1837
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 208 bits (530), Expect = 2e-53
Identities = 139/426 (32%), Positives = 231/426 (53%), Gaps = 20/426 (4%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWAC----TAFYVNKRSEQVRQKKRLVVDYRPLN 57
TP++ +++ ++L+ LI+ K++ C AF V SE+V QK R+V +Y+ LN
Sbjct: 1192 TPADKEVFEKQIKELLDNKLIK--KADPTCRHRTAAFIVRNHSEEVAQKPRIVYNYKRLN 1249
Query: 58 QFIKDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWT 117
+ D F +P S+ + I+ A+IFSKFD+K+GF + L + T F Y W
Sbjct: 1250 DNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWTTFTCSEGLYTWN 1309
Query: 118 VLPFGLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHG 177
V PFG+ AP FQ+ M + F L +L+YIDD+L+ S++E+ H + L+ F++ + G
Sbjct: 1310 VCPFGIANAPCAFQRFMQESFGD-LKFALLYIDDILIASNNEKEHIEHLKIFFNRVKEVG 1368
Query: 178 VMLSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGL-TIKQIQQFLGILNY 236
+LS +KS++ KEV++LG+ EGK QPHIV+++ KF L T+K +Q +LG+LNY
Sbjct: 1369 CVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNTLKGLQAYLGLLNY 1428
Query: 237 IRDFIPHVSKYTSKLSKMLRKNAPP-WGKEQTEAIKFLKKAAQNPPPLKIPGDGKR-ILQ 294
R +I +SK L K KN + KE I +++ PL+ P + I++
Sbjct: 1429 ARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKPLERPKETDYIIIE 1488
Query: 295 TDASDHYWAAVLIEEID-----GQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFD 349
TDAS+ W AVL+ + D + G+ASG F + + + E A+ + +F
Sbjct: 1489 TDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKTWTSLDY-EIEAINEALNKFQ 1547
Query: 350 FHLRGHHFEVQIDNSSFPKML---EFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLI 406
+L F ++ D + K + ++K ++ LR Y + +H++G+KN +
Sbjct: 1548 IYL-DKDFTIRTDCEAIVKGIKTEDYKKRSKTRWIKLRDNLLKDGYKPTFEHIKGNKNFL 1606
Query: 407 PDYLSR 412
P++LSR
Sbjct: 1607 PNFLSR 1612
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 204 bits (520), Expect = 3e-52
Identities = 126/418 (30%), Positives = 231/418 (55%), Gaps = 12/418 (2%)
Query: 1 MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFI 60
+ P +++A +E Q +K G+I +K+ AC +V K+ +R +VVDY+PLN+++
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLR----MVVDYKPLNKYV 475
Query: 61 KDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLP 120
K + +PLP I L + I+ + IF+K D+KS + + + D K AF P +++ V+P
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 535
Query: 121 FGLKVAPSLFQKAMTKIFEPILHTSLV-YIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
+G+ +AP+ FQ + I + + +V Y+D++L+ S E H K ++ ++
Sbjct: 536 YGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 180 LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
++ K + +V F+G H +E F P ++++ ++ + K+++QFLG +NY+R
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNYLRK 654
Query: 240 FIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRI-LQTDA 297
FIP S+ T L+ +L+K+ W QT+AI+ +K+ +PP L+ K+I L+TDA
Sbjct: 655 FIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDA 714
Query: 298 SDHYWAAVLIEEIDGQKLY-CGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRG-- 354
SD AVL ++ D K Y G+ S + A+L+Y + KE LA+ +K + +L
Sbjct: 715 SDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTI 774
Query: 355 HHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
F++ D+ + + +++ P N ++ R + + ++F + + GS N I D LSR
Sbjct: 775 EPFKILTDHRNLIGRITNESE-PENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 204 bits (520), Expect = 3e-52
Identities = 126/418 (30%), Positives = 231/418 (55%), Gaps = 12/418 (2%)
Query: 1 MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFI 60
+ P +++A +E Q +K G+I +K+ AC +V K+ +R +VVDY+PLN+++
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLR----MVVDYKPLNKYV 475
Query: 61 KDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLP 120
K + +PLP I L + I+ + IF+K D+KS + + + D K AF P +++ V+P
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 535
Query: 121 FGLKVAPSLFQKAMTKIFEPILHTSLV-YIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
+G+ +AP+ FQ + I + + +V Y+D++L+ S E H K ++ ++
Sbjct: 536 YGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 180 LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
++ K + +V F+G H +E F P ++++ ++ + K+++QFLG +NY+R
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNYLRK 654
Query: 240 FIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRI-LQTDA 297
FIP S+ T L+ +L+K+ W QT+AI+ +K+ +PP L+ K+I L+TDA
Sbjct: 655 FIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDA 714
Query: 298 SDHYWAAVLIEEIDGQKLY-CGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRG-- 354
SD AVL ++ D K Y G+ S + A+L+Y + KE LA+ +K + +L
Sbjct: 715 SDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTI 774
Query: 355 HHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
F++ D+ + + +++ P N ++ R + + ++F + + GS N I D LSR
Sbjct: 775 EPFKILTDHRNLIGRITNESE-PENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 204 bits (520), Expect = 3e-52
Identities = 131/414 (31%), Positives = 213/414 (50%), Gaps = 9/414 (2%)
Query: 4 SELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKK--RLVVDYRPLNQFIK 61
S++ Q + Q+LIK ++EP+ S++ V K+S KK RLV+DYR +N+ +
Sbjct: 325 SQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLL 384
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPF 121
DKFPLP+I + + A FS D+ SGF Q+ LD R T+F N Y++T LPF
Sbjct: 385 ADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPF 444
Query: 122 GLKVAPSLFQKAMTKIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVML 180
GLK+AP+ FQ+ MT F I + + +Y+DD+++ E+ K L + + C ++ + L
Sbjct: 445 GLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKL 504
Query: 181 SSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDF 240
K EV FLG T+ +P + + +P ++F+ NY R F
Sbjct: 505 HPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPH-DADSARRFVAFCNYYRRF 563
Query: 241 IPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRI-LQTDAS 298
I + + Y+ ++++ +KN P W E +A LK NP L+ P K + TDAS
Sbjct: 564 IKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDAS 623
Query: 299 DHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFE 358
AVL + +G +L +AS F E + TT +E A+ + I F ++ G HF
Sbjct: 624 KQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFT 683
Query: 359 VQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
V+ D+ + N P+ ++ R++ Y+F+V++++G N + D LSR
Sbjct: 684 VKTDHRPLTYLFSMVN---PSSKLTRIRLELEEYNFTVEYLKGKDNHVADALSR 734
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 204 bits (518), Expect = 4e-52
Identities = 127/418 (30%), Positives = 229/418 (54%), Gaps = 12/418 (2%)
Query: 1 MTPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFI 60
+ P +++A +E Q +K G+I +K+ AC +V K+ +R +VVDY+PLN+++
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLR----MVVDYKPLNKYV 475
Query: 61 KDDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLP 120
K + +PLP I L + I+ + IF+K D+KS + + + D K AF P +++ V+P
Sbjct: 476 KPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMP 535
Query: 121 FGLKVAPSLFQKAMTKIFEPILHTSLV-YIDDVLLFSHDEESHKKFLQQFYDICSKHGVM 179
+G+ AP+ FQ + I + +V Y+DD+L+ S E H K ++ ++
Sbjct: 536 YGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLI 595
Query: 180 LSSRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRD 239
++ K + +V F+G H +E F P ++++ ++ + K+++QFLG +NY+R
Sbjct: 596 INQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQW-KQPKNRKELRQFLGSVNYLRK 654
Query: 240 FIPHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIPGDGKRI-LQTDA 297
FIP S+ T L+ +L+K+ W QT+AI+ +K+ +PP L+ K+I L+TDA
Sbjct: 655 FIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDA 714
Query: 298 SDHYWAAVLIEEIDGQKLY-CGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRG-- 354
SD AVL ++ D K Y G+ S + A+L+Y + KE LA+ +K + +L
Sbjct: 715 SDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTI 774
Query: 355 HHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
F++ D+ + + +++ P N ++ R + + ++F + + GS N I D LSR
Sbjct: 775 EPFKILTDHRNLIGRITNESE-PENKRLARWQLFLQDFNFEINYRPGSANHIADALSR 831
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 198 bits (504), Expect = 2e-50
Identities = 135/412 (32%), Positives = 212/412 (50%), Gaps = 24/412 (5%)
Query: 14 QQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKFPLPKIYSL 73
Q+++ Q +I +KS W+ V K+ +R + +DYR +N+ +K++ PLP I +
Sbjct: 963 QKMLNQKVIRESKSPWSSPVVLVKKKDGSIR----MCIDYRKVNKVVKNNAHPLPNIEAT 1018
Query: 74 YSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSLFQKA 133
+ +++ FDM +GFWQ+ LD K + TAF I + ++W VLPFGL ++P+LFQ
Sbjct: 1019 LQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGT 1078
Query: 134 MTKIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQIATKEV 192
M +I +L + VY+DD+L+ S D E H + +++ K G+ L + K IA KEV
Sbjct: 1079 MEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEV 1138
Query: 193 DFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKYTSKLS 252
++LG T Q +++ +F +K++Q FLG++ Y R FI + ++ S L+
Sbjct: 1139 EYLGHKVTLDGVETQEVKTDKMKQF-SRPTNVKELQSFLGLVGYYRKFILNFAQIASSLT 1197
Query: 253 KML-RKNAPPWGKEQTEAIKFLKKAAQNPPPLKIP-------GDGKRILQTDASDHYWAA 304
++ K A W KEQ A + LKK P L P GD ++ TDAS A
Sbjct: 1198 SLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGA 1257
Query: 305 VLIEE-IDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDN 363
VL +E DGQ+ AS AE YH T E LA+ + ++RF + G V D+
Sbjct: 1258 VLAQEGPDGQQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVFTDH 1317
Query: 364 SSFPKMLEFKNKTPPNPQILRLKEW-FSLYDFSVK--HVQGSKNLIPDYLSR 412
+L+ +P RL W + +F VK ++ G N + D LSR
Sbjct: 1318 KPLISLLK------GSPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR 1363
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 188 bits (478), Expect = 2e-47
Identities = 109/312 (34%), Positives = 178/312 (56%), Gaps = 7/312 (2%)
Query: 2 TPSELRAAQEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIK 61
T +++ +EEC+ L+K+GLI ++S + AFYV +E R K+R+V++Y+ +N+
Sbjct: 212 TIRDVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATI 271
Query: 62 DDKFPLPKIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAF-CIPNAHYQWTVLP 120
D + LP+ + IK + FS D KSG++QL L +P TAF C P HY+W VL
Sbjct: 272 GDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLS 331
Query: 121 FGLKVAPSLFQKAMTKIFEPILHTSLVYIDDVLLFSH-DEESHKKFLQQFYDICSKHGVM 179
FGLK APS++Q+ M + + + H L YIDD+L+F+ +E H ++ + G++
Sbjct: 332 FGLKQAPSIYQRFMDQSLKGLEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKGII 391
Query: 180 LSSRKSQIATKEVDFLGMHFT-EGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIR 238
+S +KS++ +E+++LG+ G+ PH E++ +FPDE KQIQ+FLG +NYI
Sbjct: 392 ISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKILQFPDELEDRKQIQRFLGCINYIA 451
Query: 239 D--FIPHVSKYTSKLSKMLR-KNAPPWGKEQTEAIKFLKKAAQNPPPL-KIPGDGKRILQ 294
+ F +++ L K + KN W T+ ++ +K Q+ P L I++
Sbjct: 452 NEGFFKNLALERKHLQKKISVKNPWKWDTIDTKMVQSIKGKIQSLPKLYNASIQDFLIVE 511
Query: 295 TDASDHYWAAVL 306
TDAS H W+ L
Sbjct: 512 TDASQHSWSGCL 523
Score = 37.0 bits (84), Expect = 0.094
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 307 IEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNSSF 366
I++++ + L C + SG F D E Y E LA ++++ L F ++ D+ F
Sbjct: 578 IKKLENELLLCKYVSGTFTDTETRYPIAELEVLAGVKVLEKWRIDLLQTRFLLRTDSKYF 637
Query: 367 PKMLEFKNKTP-PNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
+ KT N +++R + Y V+ ++ N D L+R
Sbjct: 638 AGFCRYNIKTDYRNGRLIRWQLRLQAYQPYVELIKSENNPFADTLTR 684
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 183 bits (464), Expect = 8e-46
Identities = 122/410 (29%), Positives = 201/410 (48%), Gaps = 13/410 (3%)
Query: 10 QEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKK-RLVVDYRPLNQFIKDDKFPLP 68
+ + Q+++ QGLI + S + + V K+ + K R+V+DYR LN+ D++P+P
Sbjct: 223 ENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIP 282
Query: 69 KIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPS 128
+ + + F+ D+ GF Q+ +D + KTAF + HY++ +PFGL+ AP+
Sbjct: 283 NMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPA 342
Query: 129 LFQKAMTKIFEPILHT-SLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQI 187
FQ+ M I P+L+ LVY+DD+++FS H +Q + + + L K +
Sbjct: 343 TFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEF 402
Query: 188 ATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKY 247
KE +FLG T P P V+ + +P K+I+ FLG+ Y R FIP+ +
Sbjct: 403 LKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIP-TKDKEIRAFLGLTGYYRKFIPNYADI 461
Query: 248 TSKLSKMLRKNA--PPWGKEQTEAIKFLKKAAQNPPPLKIPG-DGKRILQTDASDHYWAA 304
++ L+K E EA + LK P L++P + K +L TDAS+ A
Sbjct: 462 AKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGA 521
Query: 305 VLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRGHHFEVQIDNS 364
VL + +G + S D EL+Y KE LA+ + K F +L G F + D+
Sbjct: 522 VLSQ--NGHPI--SFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQ 577
Query: 365 SFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSRPK 414
+ K P ++ R + S Y F + +++G +N + D LSR K
Sbjct: 578 PLRWLHNLKE---PGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIK 624
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 159 bits (402), Expect = 1e-38
Identities = 122/419 (29%), Positives = 201/419 (47%), Gaps = 20/419 (4%)
Query: 10 QEECQQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKK-RLVVDYRPLNQFIKDDKFPLP 68
+ + +L++ G+I P+ S + + V K+ + +K+ R+VVD++ LN D +P+P
Sbjct: 140 ERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIP 199
Query: 69 KIYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPS 128
I + + + NA F+ D+ SGF Q+ + D PKTAF N Y++ LPFGLK AP+
Sbjct: 200 DINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPA 259
Query: 129 LFQKAMTKIF-EPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQI 187
+FQ+ + I E I VYIDD+++FS D ++H K L+ SK + ++ KS
Sbjct: 260 IFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHF 319
Query: 188 ATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKY 247
+V+FLG T P V + + P ++K++++FLG+ +Y R FI +K
Sbjct: 320 LDTQVEFLGYIVTADGIKADPKKVRAISEMPPP-TSVKELKRFLGMTSYYRKFIQDYAKV 378
Query: 248 TSKLSKMLR----------KNAPPWGKEQTEAIKF--LKKAAQNPPPLKIPGDGKRI-LQ 294
L+ + R + P ++T F LK + L P K L
Sbjct: 379 AKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLT 438
Query: 295 TDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRG 354
TDAS+ AVL ++ G+ + S E +Y T KE LA+ + + +L G
Sbjct: 439 TDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYG 498
Query: 355 -HHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
+V D+ L +N N ++ R K Y+ + + G N++ D LSR
Sbjct: 499 AGTIKVYTDHQPLTFALGNRNF---NAKLKRWKARIEEYNCELIYKPGKSNVVADALSR 554
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 156 bits (394), Expect = 1e-37
Identities = 119/418 (28%), Positives = 200/418 (47%), Gaps = 24/418 (5%)
Query: 12 ECQQLIKQGLIEPTKSEWACTAFYVNKRSEQV--RQKKRLVVDYRPLNQFIKDDKFPLPK 69
E +QL+K G+I P++S + + V+K+ KRLV+D+R LN+ D++P+P
Sbjct: 200 EVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPS 259
Query: 70 IYSLYSYIKNAHIFSKFDMKSGFWQLGLDPKDRPKTAFCIPNAHYQWTVLPFGLKVAPSL 129
I + + + A F+ D+KSG+ Q+ L DR KT+F + Y++ LPFGL+ A S+
Sbjct: 260 IPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSI 319
Query: 130 FQKAMTKIF-EPILHTSLVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLSSRKSQIA 188
FQ+A+ + E I VY+DDV++FS +E H + + + +S K++
Sbjct: 320 FQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFF 379
Query: 189 TKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFIPHVSKY- 247
+ V++LG ++ P V+ + ++P+ K ++ FLG+ +Y R FI +
Sbjct: 380 KESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYK-VRSFLGLASYYRVFIKDFAAIA 438
Query: 248 ----------TSKLSKMLRKNAP-PWGKEQTEAIKFLKK-AAQNPPPLKIPGDGKRI-LQ 294
+SK + K P + + Q A + L+ A LK P K L
Sbjct: 439 RPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLT 498
Query: 295 TDASDHYWAAVLIEEIDGQKLYCGHASGQFKDAELHYHTTFKETLAVKYGIKRFDFHLRG 354
TDAS AVL +E G+ + S K E +Y T +E LA+ + + + L G
Sbjct: 499 TDASASGIGAVLSQE--GRPITM--ISRTLKQPEQNYATNERELLAIVWALGKLQNFLYG 554
Query: 355 HHFEVQIDNSSFPKMLEFKNKTPPNPQILRLKEWFSLYDFSVKHVQGSKNLIPDYLSR 412
E+ I P ++ N +I R K + ++ V + G +N + D LSR
Sbjct: 555 SR-EINIFTDHQPLTFAVADRN-TNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSR 610
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 107 bits (268), Expect = 4e-23
Identities = 82/286 (28%), Positives = 137/286 (47%), Gaps = 17/286 (5%)
Query: 14 QQLIKQGLIEPTKSEWACTAFYVNKRSEQVRQKKRLVVDYRPLNQFIKDDKFPLPKIYSL 73
Q+ + G++ P +S W V K R V D R +N+ ++D +P Y+L
Sbjct: 196 QKFLDLGVLVPCRSPWNTPLLPVKKPGTN---DYRPVQDLREINKRVQDIHPTVPNPYNL 252
Query: 74 YSYIKNAHI-FSKFDMKSGFWQLGLDPKDRPKTAFCIPN------AHYQWTVLPFGLKVA 126
S + ++ +S D+K F+ L L P +P AF + WT LP G K +
Sbjct: 253 LSSLPPSYTWYSVLDLKDAFFCLRLHPNSQPLFAFEWKDPEKGNTGQLTWTRLPQGFKNS 312
Query: 127 PSLFQKAMTKIFEPILHTS-----LVYIDDVLLFSHDEESHKKFLQQFYDICSKHGVMLS 181
P+LF +A+ + P + L Y+DD+L+ + E KK Q+ SK G +S
Sbjct: 313 PTLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVS 372
Query: 182 SRKSQIATKEVDFLGMHFTEGKFVPQPHIVEELPKFPDEGLTIKQIQQFLGILNYIRDFI 241
++K+Q+ +EV +LG EGK P + K P T +Q+++FLG + R +I
Sbjct: 373 AKKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIP-VPTTPRQVREFLGTAGFCRLWI 431
Query: 242 PHVSKYTSKLSKMLRKNAP-PWGKEQTEAIKFLKKAAQNPPPLKIP 286
P + + L + +++ P W +E +A +KKA + P L +P
Sbjct: 432 PGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALP 477
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,516,187
Number of Sequences: 164201
Number of extensions: 2312043
Number of successful extensions: 5528
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 5204
Number of HSP's gapped (non-prelim): 163
length of query: 418
length of database: 59,974,054
effective HSP length: 113
effective length of query: 305
effective length of database: 41,419,341
effective search space: 12632899005
effective search space used: 12632899005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0490.11