BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.5
         (58 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran...    35  0.037
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei...    32  0.41
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei...    32  0.41
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei...    32  0.41
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III     28  4.5

>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
           transposon 412 [Contains: Protease (EC 3.4.23.-);
           Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1237

 Score = 35.0 bits (79), Expect = 0.037
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 15  HPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQKAK 52
           H G+TK    +K H++   M K + EYV  C   QKAK
Sbjct: 909 HTGITKTLAKVKRHYYWKNMSKYIKEYVRKCQKCQKAK 946


>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
           type 3
          Length = 1333

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 15/49 (30%), Positives = 26/49 (52%)

Query: 1   KLILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQ 49
           + I+ + H+    IHPG+  +   +   F   G++K++ EYV  C T Q
Sbjct: 913 RTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961


>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
           type 2
          Length = 1333

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 15/49 (30%), Positives = 26/49 (52%)

Query: 1   KLILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQ 49
           + I+ + H+    IHPG+  +   +   F   G++K++ EYV  C T Q
Sbjct: 913 RTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961


>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
           type 1
          Length = 1333

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 15/49 (30%), Positives = 26/49 (52%)

Query: 1   KLILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTCLTYQ 49
           + I+ + H+    IHPG+  +   +   F   G++K++ EYV  C T Q
Sbjct: 913 RTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQ 961


>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
          Length = 2186

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 15/43 (34%), Positives = 24/43 (54%)

Query: 3    ILDEGHKSRLSIHPGMTKMYQDLKLHFWCPGMKKRVVEYVLTC 45
            +L E H+  L+ H G+ KM++ +   F+ P M+  V   V TC
Sbjct: 1468 LLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTC 1510


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,658,325
Number of Sequences: 164201
Number of extensions: 179853
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 5
length of query: 58
length of database: 59,974,054
effective HSP length: 34
effective length of query: 24
effective length of database: 54,391,220
effective search space: 1305389280
effective search space used: 1305389280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)