BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0476b.2
(264 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YKYB_BACSU (P42430) Hypothetical protein ykyB 31 2.7
PUR4_XYLFT (Q87DN2) Phosphoribosylformylglycinamidine synthase (... 30 4.6
PUR4_XYLFA (Q9PDF6) Phosphoribosylformylglycinamidine synthase (... 30 4.6
KRP1_SCHPO (Q09175) Dibasic processing endoprotease precursor (E... 30 4.6
DXR_CAMJE (Q9PMV3) 1-deoxy-D-xylulose 5-phosphate reductoisomera... 30 4.6
DNAB_MYCTU (P71715) Replicative DNA helicase (EC 3.6.1.-) [Conta... 30 6.0
DNAB_MYCBO (P59966) Replicative DNA helicase (EC 3.6.1.-) [Conta... 30 6.0
COA2_POVMC (P12908) Coat protein VP2 [Contains: Coat protein VP3] 30 6.0
COA2_POVMA (P03096) Coat protein VP2 [Contains: Coat protein VP3] 30 6.0
R8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like protein 2 30 7.8
MOTA_AGRT5 (Q44456) Chemotaxis motA protein (Motility protein A) 30 7.8
>YKYB_BACSU (P42430) Hypothetical protein ykyB
Length = 154
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 27 GKRVD--YTRIPRFCEEQADHMLSVGDLHIFTSPV-SDYHQVTGVGLHNLLEDGPAA 80
GK++ +++ PRF ++Q+D ++S+GD + P D+ + +G N P A
Sbjct: 54 GKKIGLHFSKNPRFSQQQSDVLISIGDYYFHMPPTKEDFEHLPHLGTLNQSYRNPKA 110
>PUR4_XYLFT (Q87DN2) Phosphoribosylformylglycinamidine synthase (EC
6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide
ribotide amidotransferase) (FGARAT) (Formylglycinamide
ribotide synthetase)
Length = 1322
Score = 30.4 bits (67), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 31 DYTRIPRFCEEQADHMLSVGDLHIFTSPVSDYHQVTGVGLHN----LLEDGPAAGV 82
D + R C+E DH +++G +P+ +H V GL N LL D GV
Sbjct: 463 DNPEMQRRCQEVIDHCVALGT----NNPIRSFHDVGAGGLSNAIPELLHDSEVGGV 514
>PUR4_XYLFA (Q9PDF6) Phosphoribosylformylglycinamidine synthase (EC
6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide
ribotide amidotransferase) (FGARAT) (Formylglycinamide
ribotide synthetase)
Length = 1322
Score = 30.4 bits (67), Expect = 4.6
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 31 DYTRIPRFCEEQADHMLSVGDLHIFTSPVSDYHQVTGVGLHN----LLEDGPAAGV 82
D + R C+E DH +++G +P+ +H V GL N LL D GV
Sbjct: 463 DNPEMQRRCQEVIDHCVALGT----NNPIRSFHDVGAGGLSNAIPELLHDSEVGGV 514
>KRP1_SCHPO (Q09175) Dibasic processing endoprotease precursor (EC
3.4.21.-) (KEX2-related protease)
Length = 709
Score = 30.4 bits (67), Expect = 4.6
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 176 EYNQIADQWQVLNPDMNLGDRKLNISKP--AIVNEWIYFMSDNYHYMNFIDDATLMPYIM 233
++ ++A WQV+NP L ++N++K ++ NE I M + + + +
Sbjct: 438 KFVEVAKDWQVVNPQTWLIAPEINVNKSFGSVNNETITEMVSEFTVTKDMIEKS------ 491
Query: 234 AYSHTDHTSVRLDLPNN---ALEYLFHGSYGV 262
+ +H +VR+ +P N ALE L G+
Sbjct: 492 NFKRLEHVTVRVCIPFNRRGALEILLESPSGI 523
>DXR_CAMJE (Q9PMV3) 1-deoxy-D-xylulose 5-phosphate reductoisomerase
(EC 1.1.1.267) (DXP reductoisomerase)
(1-deoxyxylulose-5-phosphate reductoisomerase)
Length = 356
Score = 30.4 bits (67), Expect = 4.6
Identities = 19/78 (24%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 160 LSVTRQNKIFPPYVLKEYNQIADQWQVLNPDMNLGDRKLNISKPAIVNEWIYFMSDNYHY 219
L +T F Y +K+ NQ++ + + +P+ N+G K+ I + N+ ++ + + YH
Sbjct: 150 LYITASGGAFYRYKIKDLNQVSVKDALKHPNWNMG-AKITIDSATMANK-LFEIIEAYHL 207
Query: 220 MNFID-DATLMPYIMAYS 236
+F + DA + P + ++
Sbjct: 208 YDFKEIDALIEPRSLVHA 225
>DNAB_MYCTU (P71715) Replicative DNA helicase (EC 3.6.1.-)
[Contains: Endonuclease PI-MtuHIP (EC 3.1.-.-) (Mtu dnaB
intein)]
Length = 874
Score = 30.0 bits (66), Expect = 6.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 48 SVGDLHIFTSPVSDYHQ--VTGVGLHNLLE 75
S+GD H+F VS H G+ LHN LE
Sbjct: 789 SIGDQHVFDGTVSGTHNFVANGISLHNSLE 818
>DNAB_MYCBO (P59966) Replicative DNA helicase (EC 3.6.1.-)
[Contains: Endonuclease PI-MboHIP (EC 3.1.-.-) (Mbo dnaB
intein)]
Length = 874
Score = 30.0 bits (66), Expect = 6.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 48 SVGDLHIFTSPVSDYHQ--VTGVGLHNLLE 75
S+GD H+F VS H G+ LHN LE
Sbjct: 789 SIGDQHVFDGTVSGTHNFVANGISLHNSLE 818
>COA2_POVMC (P12908) Coat protein VP2 [Contains: Coat protein VP3]
Length = 319
Score = 30.0 bits (66), Expect = 6.0
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Query: 57 SPVSDYHQVTGVG------LHNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLR- 109
S +SDY++ G+ L N +E G PT ++ SG+++ + +V R
Sbjct: 224 SSLSDYYRQLGLNPPQRRALFNRIEGSMGNGGPTPAAHIQDESGEVIKFYQAQVVSHQRV 283
Query: 110 ---WKKVLRLLICNPVTSSWA 127
W L L + +T +WA
Sbjct: 284 TPDWMLPLILGLYGDITPTWA 304
>COA2_POVMA (P03096) Coat protein VP2 [Contains: Coat protein VP3]
Length = 319
Score = 30.0 bits (66), Expect = 6.0
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Query: 57 SPVSDYHQVTGVG------LHNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLR- 109
S +SDY++ G+ L N +E G PT ++ SG+++ + +V R
Sbjct: 224 SSLSDYYRQLGLNPPQRRALFNRIEGSMGNGGPTPAAHIQDESGEVIKFYQAQVVSHQRV 283
Query: 110 ---WKKVLRLLICNPVTSSWA 127
W L L + +T +WA
Sbjct: 284 TPDWMLPLILGLYGDITPTWA 304
>R8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like protein 2
Length = 1271
Score = 29.6 bits (65), Expect = 7.8
Identities = 26/119 (21%), Positives = 49/119 (40%), Gaps = 4/119 (3%)
Query: 11 VFHRLPAYIVCRFKCVGKRVDYTRIPRFCEEQADHMLSVGDLHIFTSPVSDYHQVTGVGL 70
+F +PA + RF+CV + + R P E+ +S L D +
Sbjct: 915 IFELVPAKSIARFRCVSESIH--RRPDVTEQSLTKSMSRPRLLFALEVNKDLLFFSSPQP 972
Query: 71 HNLLEDGPAAGVPTDFFNVVARSGKILSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPL 129
N ++ P F + +I ++ GL+ ++ +W + +ICNPV+ + L
Sbjct: 973 QNPYDNSSLVATPYKRFPKYLPT-RICTTLGGLVFLQ-KWLRKKTRVICNPVSGDYITL 1029
>MOTA_AGRT5 (Q44456) Chemotaxis motA protein (Motility protein A)
Length = 290
Score = 29.6 bits (65), Expect = 7.8
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 31 DYTRIPRFCEEQADHMLSVGDLHIFT---SPVSDYHQVTGVGLHNLLEDGPAAGVPTDFF 87
DY R+ ++ + ++ D I T + YH +T +G + PA G+
Sbjct: 128 DYVRLIIIGNARSHEIEALMDEEIETILHDKLKPYHAITTMG-----DSFPAIGIVAAVL 182
Query: 88 NVVARSGKI------LSSWNGLIVVRLRWKKVLRLLICNPVTSSWAPLRTR 132
V+ GKI L G +V +L ICNP+ S +RT+
Sbjct: 183 GVIKAMGKINESPEVLGGLIGAALVGTMLGIILSYSICNPLASQVKIVRTK 233
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,455,902
Number of Sequences: 164201
Number of extensions: 1394558
Number of successful extensions: 3386
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3383
Number of HSP's gapped (non-prelim): 13
length of query: 264
length of database: 59,974,054
effective HSP length: 108
effective length of query: 156
effective length of database: 42,240,346
effective search space: 6589493976
effective search space used: 6589493976
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0476b.2