BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0476b.11
         (556 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TRA5_LACLA (P35881) Transposase for insertion sequence element I...    45  6e-04
TRA1_LACHE (P35880) Transposase for insertion sequence element I...    39  0.036
MUTS_RHOBA (Q7UP05) DNA mismatch repair protein mutS                   34  0.88
TRA3_RHIME (P80011) Transposase for insertion sequence element I...    33  1.5
ZSW3_HUMAN (Q96MP5) Zinc finger SWIM domain containing protein 3       33  2.5
Y4PO_RHISN (P55620) Probable transposase for insertion sequence ...    32  4.3
HEMZ_HAEIN (P43868) Ferrochelatase (EC 4.99.1.1) (Protoheme ferr...    32  4.3
Y347_CHLPN (Q9Z8J6) Probable metal transport system membrane pro...    32  5.7
YCF0_ANTFO (Q85B66) Hypothetical 121 kDa protein ycf1 (ORF1031)        31  7.4
GLYA_CHLMU (Q9PJW0) Serine hydroxymethyltransferase (EC 2.1.2.1)...    31  9.7

>TRA5_LACLA (P35881) Transposase for insertion sequence element
           IS905
          Length = 391

 Score = 44.7 bits (104), Expect = 6e-04
 Identities = 43/151 (28%), Positives = 68/151 (44%), Gaps = 19/151 (12%)

Query: 282 KQPKAVVTDGDKSMREAVKVVFPNATHRLCGWHIQQNCLEKIKIPD---FLNEFKTLIYG 338
           +Q   VVTDG K + + +   +P A  + C  HI +N   K+K  D    L +FKT+   
Sbjct: 220 QQVSLVVTDGFKGLEQIISQAYPLAKQQRCLIHISRNLASKVKRADRAVILEQFKTI--- 276

Query: 339 NFTPERFETKWLQVIEKYGIGE-----EKWIKQTYETRQMWATAFMREKFFAGIRTTSLC 393
            +  E  E   +Q +E + I E      K ++    T  +        + +  I +T+L 
Sbjct: 277 -YRAENLEMA-VQALENF-IAEWKPKYRKVMESLENTDNLLTFYQFPYQIWHSIYSTNLI 333

Query: 394 EGINSFIKRYVQCKNSILDFIYNFERAVEEY 424
           E +N  IKR  Q K  +L   +  E A+E Y
Sbjct: 334 ESLNKEIKR--QTKKKVL---FPNEEALERY 359


>TRA1_LACHE (P35880) Transposase for insertion sequence element
           IS1201
          Length = 369

 Score = 38.9 bits (89), Expect = 0.036
 Identities = 25/92 (27%), Positives = 47/92 (50%), Gaps = 6/92 (6%)

Query: 247 NHHKETTIFACALVCDETIETYKWVLKALDEAMFGKQPKAVVTDGDKSMREAVKVVFPNA 306
           N HKE   +  A   +E IE +  +L+++      +Q +  ++DG   M+ A+   +P A
Sbjct: 188 NGHKEVIDYCIAP--NENIEVWTELLQSMKSRGL-EQVELFLSDGVVGMKTALAKTYPQA 244

Query: 307 THRLCGWHIQQNCLEKIKIPD---FLNEFKTL 335
             + C  H+ +N   K+++ D    +NEFK +
Sbjct: 245 HFQRCLVHVMRNICAKVRVEDREAIMNEFKQI 276


>MUTS_RHOBA (Q7UP05) DNA mismatch repair protein mutS
          Length = 891

 Score = 34.3 bits (77), Expect = 0.88
 Identities = 35/123 (28%), Positives = 52/123 (41%), Gaps = 27/123 (21%)

Query: 338 GNFTPERFETKWLQVIEKYGIGEEKWIKQTYETRQMWATAFMREKFFAGIRTTSLCEGIN 397
           GNF  E F+++ L  + +   G ++WI + Y+ RQM  T     K            G N
Sbjct: 438 GNFIREGFDSE-LDTLRELARGGKRWIAE-YQQRQMDETGIANLKV-----------GYN 484

Query: 398 SFIKRYVQCKNSILDFI----------YNFERAV----EEYRHNELASDFKSSYGEPVLI 443
                Y++  N+  D I           N ER +    +EY    LA+D K+S  E +L 
Sbjct: 485 RVFGYYLEVSNAHKDKIPADFIRKQTLKNCERYITPELKEYEEKVLAADEKASSREQMLF 544

Query: 444 TAL 446
           T L
Sbjct: 545 TLL 547


>TRA3_RHIME (P80011) Transposase for insertion sequence element
           ISRM3
          Length = 400

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 35/126 (27%), Positives = 53/126 (41%), Gaps = 8/126 (6%)

Query: 288 VTDGDKSMREAVKVVFPNATHRLCGWHIQQNCLEKIKIPDFLNEFKTL--IYGNFTPERF 345
           V DG K   EA+  VFP    + C  H+ ++ LE +   D       L  IY     E  
Sbjct: 229 VVDGLKGFPEAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRRTVVPALRAIYRARDAEA- 287

Query: 346 ETKWLQVIEKYGIGEEKWIKQTYETRQMWATAFMREKFFAGIR----TTSLCEGINSFIK 401
             K L+  E+ G   +K+       R+ W        F  G+R    TT+  E +NS ++
Sbjct: 288 GLKALEAFEE-GYWGQKYPAIAQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLR 346

Query: 402 RYVQCK 407
           R V+ +
Sbjct: 347 RAVRSR 352


>ZSW3_HUMAN (Q96MP5) Zinc finger SWIM domain containing protein 3
          Length = 696

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 514 CDCGFSEYVGIPCSHIICAMRTENMNEFPASLVSKRWLK 552
           C C F ++  +PC HI+  + T +      ++V +RW K
Sbjct: 549 CSCSFQQWYHLPCRHILALLHT-SQQPVGEAMVCRRWQK 586


>Y4PO_RHISN (P55620) Probable transposase for insertion sequence
           element ISRM3-like
          Length = 400

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 34/126 (26%), Positives = 54/126 (41%), Gaps = 8/126 (6%)

Query: 288 VTDGDKSMREAVKVVFPNATHRLCGWHIQQNCLEKIKIPDFLNEFKTL--IYGNFTPERF 345
           V DG K   +A+  VFP    + C  H+ ++ LE +   D       L  IY     E  
Sbjct: 229 VVDGLKGFPDAITAVFPQTIVQTCIVHLIRHSLEFVSYKDRKPVVPALRAIYRARDAEA- 287

Query: 346 ETKWLQVIEKYGIGEEKWIKQTYETRQMWATAFMREKFFAGIR----TTSLCEGINSFIK 401
             K L+  E+ G   +K+   +   R+ W        F  G+R    TT+  E +NS ++
Sbjct: 288 GLKALEAFEE-GYWGQKYPAISQSWRRNWEHVVPFFAFPEGVRRIIYTTNAIEALNSKLR 346

Query: 402 RYVQCK 407
           R V+ +
Sbjct: 347 RAVRSR 352


>HEMZ_HAEIN (P43868) Ferrochelatase (EC 4.99.1.1) (Protoheme
           ferro-lyase) (Heme synthetase)
          Length = 323

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 37/153 (24%), Positives = 63/153 (40%), Gaps = 22/153 (14%)

Query: 313 WHIQQNCL----EKIKIPDFLNEFKTLIY----------GNFTPERFETKWLQVIEKYGI 358
           +HI +N +    + IK+    +EF    Y          G++  E  +   + V+ K G+
Sbjct: 167 YHIDENYINALADSIKVRLKSDEFLLFSYHGIPLRYEKMGDYYREHCKQTTIAVVNKLGL 226

Query: 359 GEEKWIKQTYETRQMWATAFMREKFFAGIRTTSLCEGINSFIKRY-VQCKNSILDFIYNF 417
            E +W + T+++R      F RE++        L       I++  V C    +D +   
Sbjct: 227 TENQW-RMTFQSR------FGREEWLQPYTDKFLESAAAQNIQKIAVICPGFSVDCLETI 279

Query: 418 ERAVEEYRHNELASDFKSSYGEPVLITALSHIE 450
           E   EE R N L +  +S    P L    +HIE
Sbjct: 280 EEIDEENRENFLNNGGQSYQYIPALNVEHAHIE 312


>Y347_CHLPN (Q9Z8J6) Probable metal transport system membrane
           protein CPn0347/CP0413/CPj0347/CpB0354
          Length = 448

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 2/45 (4%)

Query: 313 WHIQQNCLEKIKIPDFLNEFKTLIYGNFTPERFETKWLQVIEKYG 357
           WHI  N LE I + DF+  +K   Y  F P+ F    +Q++E  G
Sbjct: 320 WHISHNRLENISVRDFVCSYKYQEY--FGPKPFPRWRVQILEWRG 362


>YCF0_ANTFO (Q85B66) Hypothetical 121 kDa protein ycf1 (ORF1031)
          Length = 1031

 Score = 31.2 bits (69), Expect = 7.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 318 NCLEKIKIPDFLNEFKTLIYGNFTPERFETKWLQVIEKYGIGEEKWIKQTYETRQMWATA 377
           N LEK+K     N +K LI GNFT  +     +  I K  I +E  +++ ++    W + 
Sbjct: 544 NYLEKVKWETIKNSWKDLISGNFTEVKNIGSLVMKIMK--IHQESPLQEFHKEVPRWTSK 601

Query: 378 FMREKF 383
              +KF
Sbjct: 602 LKNDKF 607


>GLYA_CHLMU (Q9PJW0) Serine hydroxymethyltransferase (EC 2.1.2.1)
           (Serine methylase) (SHMT)
          Length = 497

 Score = 30.8 bits (68), Expect = 9.7
 Identities = 35/146 (23%), Positives = 53/146 (35%), Gaps = 5/146 (3%)

Query: 235 KYNKPVVIFSGYNHHKETTIFACALVCDETIETYKWVLKALDEAMFGKQPKAVVTDGDKS 294
           K ++P V+ +GY+ +     FA      E      WV    D A F       V  G+++
Sbjct: 220 KEHRPTVLIAGYSSYSRRLNFATLKQIAEDCGAVLWV----DMAHFAGLVAGGVFIGEEN 275

Query: 295 MREAVKVVFPNATHRLCGWHIQQNCLEKIKIPDFLNEFKTLIYGNFTPERFETKWLQVIE 354
                 +V    TH+          L K +  D LN+   L+ G   P     K + + E
Sbjct: 276 PIPYADIV-TTTTHKTLRGPRGGLVLAKKEYSDTLNKACPLMMGGPLPHVIAAKAVALKE 334

Query: 355 KYGIGEEKWIKQTYETRQMWATAFMR 380
              I   K+  Q  E  +  A  F R
Sbjct: 335 AMTINFRKYAHQVVENARTLAEIFQR 360


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.336    0.144    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,053,508
Number of Sequences: 164201
Number of extensions: 2366455
Number of successful extensions: 8192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8191
Number of HSP's gapped (non-prelim): 10
length of query: 556
length of database: 59,974,054
effective HSP length: 115
effective length of query: 441
effective length of database: 41,090,939
effective search space: 18121104099
effective search space used: 18121104099
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 68 (30.8 bits)