BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0437b.10
(101 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GBF4_ARATH (P42777) G-box binding factor 4 (AtbZIP40) 44 9e-05
HY5_ARATH (O24646) Transcription factor HY5 (LONG HYPOCOL5 prote... 32 0.36
CREM_MOUSE (P27699) cAMP responsive element modulator 32 0.36
CREM_HUMAN (Q03060) cAMP responsive element modulator 32 0.36
CPR2_PETCR (Q99090) Light-inducible protein CPRF-2 32 0.36
AT6B_MOUSE (O35451) Cyclic-AMP-dependent transcription factor AT... 32 0.36
AT6B_HUMAN (Q99941) Cyclic-AMP-dependent transcription factor AT... 32 0.36
AT6A_HUMAN (P18850) Cyclic-AMP-dependent transcription factor AT... 32 0.36
CE29_BOVIN (Q9TU23) Centrosomal protein Cep290 30 0.79
HY5_LYCES (Q9SM50) Transcription factor HY5 (LeHY5) (tHY5) 30 1.0
CRBA_DROME (P29747) Cyclic-AMP response element binding protein ... 29 2.3
PF21_ARATH (Q04088) Possible transcription factor PosF21 (AtbZIP59) 28 3.0
TGA1_ARATH (Q39237) Transcription factor TGA1 (DNA binding prote... 28 5.1
PRE_STRAG (P13925) Plasmid recombination enzyme (Mobilization pr... 28 5.1
CPC1_CRYPA (P87090) Cross-pathway control protein 1 28 5.1
UBP5_SCHPO (Q09879) Probable ubiquitin carboxyl-terminal hydrola... 27 8.8
TGA4_ARATH (Q39162) Transcription factor TGA4 (Ocs-element bindi... 27 8.8
>GBF4_ARATH (P42777) G-box binding factor 4 (AtbZIP40)
Length = 270
Score = 43.5 bits (101), Expect = 9e-05
Identities = 29/62 (46%), Positives = 36/62 (57%), Gaps = 3/62 (4%)
Query: 14 KHGRKMMALEDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLM 73
K GR MM + ++ +RQKRMIKN S A SR KQAY LE LE E E+L+
Sbjct: 174 KRGRVMM---EAMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLL 230
Query: 74 KQ 75
K+
Sbjct: 231 KE 232
>HY5_ARATH (O24646) Transcription factor HY5 (LONG HYPOCOL5 protein)
(AtbZIP56)
Length = 168
Score = 31.6 bits (70), Expect = 0.36
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 31 DRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQ-TAIQN 80
++R KR+++N VS +R K+AY++ LE V LE + L ++ + +QN
Sbjct: 89 NKRLKRLLRNRVSAQQARERKKAYLSELENRVKDLENKNSELEERLSTLQN 139
>CREM_MOUSE (P27699) cAMP responsive element modulator
Length = 341
Score = 31.6 bits (70), Expect = 0.36
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 23 EDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQ 75
+ + E +R+ R++KN + R K+ Y+ LE V LEV+ ++L+++
Sbjct: 276 QQLAEEATRKRELRLMKNREAAKECRRRKKEYVKCLESRVAVLEVQNKKLIEE 328
>CREM_HUMAN (Q03060) cAMP responsive element modulator
Length = 332
Score = 31.6 bits (70), Expect = 0.36
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 23 EDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQ 75
+ + E +R+ R++KN + R K+ Y+ LE V LEV+ ++L+++
Sbjct: 267 QQLAEEATRKRELRLMKNREAAKECRRRKKEYVKCLESRVAVLEVQNKKLIEE 319
>CPR2_PETCR (Q99090) Light-inducible protein CPRF-2
Length = 401
Score = 31.6 bits (70), Expect = 0.36
Identities = 18/44 (40%), Positives = 25/44 (55%)
Query: 32 RRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQ 75
+R +RM+ N S SR KQA++ LE V L VE L+K+
Sbjct: 200 KRVRRMLSNRESARRSRRRKQAHMTELETQVSQLRVENSSLLKR 243
>AT6B_MOUSE (O35451) Cyclic-AMP-dependent transcription factor ATF-6
beta (Activating transcription factor 6 beta)
(ATF6-beta) (cAMP responsive element binding
protein-like 1) (cAMP response element binding
protein-related protein) (Creb-rp)
Length = 699
Score = 31.6 bits (70), Expect = 0.36
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 32 RRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQTA 77
+RQ+RMIKN S SR K+ Y+ LE + ++ + ++L ++ A
Sbjct: 324 KRQQRMIKNRESACQSRRKKKEYLQGLEARLQAVLADNQQLRRENA 369
>AT6B_HUMAN (Q99941) Cyclic-AMP-dependent transcription factor ATF-6
beta (Activating transcription factor 6 beta)
(ATF6-beta) (cAMP responsive element binding
protein-like 1) (cAMP response element binding
protein-related protein) (Creb-rp) (G13 protein)
Length = 703
Score = 31.6 bits (70), Expect = 0.36
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 32 RRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQTA 77
+RQ+RMIKN S SR K+ Y+ LE + ++ + ++L ++ A
Sbjct: 327 KRQQRMIKNRESACQSRRKKKEYLQGLEARLQAVLADNQQLRRENA 372
>AT6A_HUMAN (P18850) Cyclic-AMP-dependent transcription factor ATF-6
alpha (Activating transcription factor 6 alpha)
(ATF6-alpha)
Length = 670
Score = 31.6 bits (70), Expect = 0.36
Identities = 19/44 (43%), Positives = 26/44 (58%)
Query: 32 RRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQ 75
RRQ+RMIKN S SR K+ Y+ LE + + E E+L K+
Sbjct: 308 RRQQRMIKNRESACQSRKKKKEYMLGLEARLKAALSENEQLKKE 351
>CE29_BOVIN (Q9TU23) Centrosomal protein Cep290
Length = 1453
Score = 30.4 bits (67), Expect = 0.79
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 6 TYDVSNIQKHGRKMMALEDMVENTVDRRQKRMIKN*VSGASSRAV---KQAYINVLERNV 62
T ++ N QK K++ +D V+ + KR IK SG + + KQ+ I L++ +
Sbjct: 902 TNELQNKQKAYGKVLREKDAVDQE-NNELKRQIKRLTSGLQGKPLIDNKQSLIEELQKKI 960
Query: 63 *SLEVEIERLMKQTAIQ 79
LE ++ER + + ++
Sbjct: 961 KKLESQLERKVDEAEMK 977
>HY5_LYCES (Q9SM50) Transcription factor HY5 (LeHY5) (tHY5)
Length = 158
Score = 30.0 bits (66), Expect = 1.0
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 31 DRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQ-TAIQN 80
++R KR+++N VS +R K+AY+ LE V LE + L ++ + +QN
Sbjct: 87 NKRLKRLLRNRVSAQQARERKKAYLIDLEARVKELETKNAELEERLSTLQN 137
>CRBA_DROME (P29747) Cyclic-AMP response element binding protein A
(Box B binding factor-2) (BBF-2) (dCREB-A)
Length = 516
Score = 28.9 bits (63), Expect = 2.3
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 32 RRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVE-------IERLMKQTAIQNLLTQ 84
++ +R IKN +S SR K+ Y++ LER V L E +E L + A NLL+Q
Sbjct: 443 KKIRRKIKNKISAQESRRKKKEYMDQLERRVEILVTENHDYKKRLEGLEETNA--NLLSQ 500
Query: 85 I 85
+
Sbjct: 501 L 501
>PF21_ARATH (Q04088) Possible transcription factor PosF21 (AtbZIP59)
Length = 398
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/47 (38%), Positives = 24/47 (50%)
Query: 32 RRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQTAI 78
+R KR+ N S A S+ K YI LER V +L+ E L Q +
Sbjct: 203 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTL 249
>TGA1_ARATH (Q39237) Transcription factor TGA1 (DNA binding protein
TGA1a-like protein) (AtbZIP47)
Length = 368
Score = 27.7 bits (60), Expect = 5.1
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 8 DVSNIQKHGRK----MMALEDMVENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERN-- 61
+VS HG M E D+ Q+R+ +N + SR K+AY+ LE +
Sbjct: 56 NVSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRL 115
Query: 62 -V*SLEVEIERLMKQ 75
+ LE E++R +Q
Sbjct: 116 KLIQLEQELDRARQQ 130
>PRE_STRAG (P13925) Plasmid recombination enzyme (Mobilization
protein)
Length = 494
Score = 27.7 bits (60), Expect = 5.1
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 26 VENTVDRRQKRMIKN*VSGASSRAVK----QAYINVLERNV*SLEVEIERL 72
+E +D++ K IK S AS RA + + YIN LE + SLE +IE L
Sbjct: 282 LEELLDKKTKEYIKI-DSEASERASELSKAEGYINTLENHSKSLEAKIECL 331
>CPC1_CRYPA (P87090) Cross-pathway control protein 1
Length = 247
Score = 27.7 bits (60), Expect = 5.1
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 26 VENTVDRRQKRMIKN*VSGASSRAVKQAYINVLERNV*SLEVEIERLMKQTA 77
+++ D + KN ++ SRA K ++ LER V LE E E+L + A
Sbjct: 182 IDDPSDTVGMKRAKNTLAARKSRARKAERMDELERQVRELEAEKEKLAAELA 233
>UBP5_SCHPO (Q09879) Probable ubiquitin carboxyl-terminal hydrolase
5 (EC 3.1.2.15) (Ubiquitin thiolesterase 5)
(Ubiquitin-specific processing protease 5)
(Deubiquitinating enzyme 5)
Length = 1108
Score = 26.9 bits (58), Expect = 8.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 65 LEVEIERLMKQTAIQNLLTQIPCCFVHAFLTCIN 98
L+ +ER M+ T ++N LT + + +++ C+N
Sbjct: 302 LQDNLERSMRDTKVENALTNLFVGKMKSYIACVN 335
>TGA4_ARATH (Q39162) Transcription factor TGA4 (Ocs-element binding
factor 4) (OBF4) (AtbZIP57)
Length = 364
Score = 26.9 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 31 DRRQKRMIKN*VSGASSRAVKQAYINVLERN---V*SLEVEIERLMKQ 75
D+ Q+R+ +N + SR K+AY+ LE + + LE E++R +Q
Sbjct: 79 DKIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQELDRARQQ 126
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.333 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,500,952
Number of Sequences: 164201
Number of extensions: 220387
Number of successful extensions: 954
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 17
length of query: 101
length of database: 59,974,054
effective HSP length: 77
effective length of query: 24
effective length of database: 47,330,577
effective search space: 1135933848
effective search space used: 1135933848
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)
Lotus: description of TM0437b.10