BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0404.10
(989 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SFR2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Spl... 66 5e-10
SFR2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splic... 64 2e-09
SFR2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Spl... 64 2e-09
SFR2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Spl... 61 1e-08
NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA... 55 1e-06
PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 54 2e-06
RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA binding ... 54 2e-06
SFR2_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri... 54 3e-06
ROG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hn... 53 4e-06
CIRP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-... 53 4e-06
CIRP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-ri... 53 5e-06
CIRP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-... 53 5e-06
CIRP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-... 53 5e-06
RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA binding ... 51 1e-05
PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 51 1e-05
RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre... 50 2e-05
GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu... 50 2e-05
PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 50 4e-05
CIRP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-... 50 4e-05
ROG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hn... 49 5e-05
>SFR2_CHICK (P30352) Splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) (PR264 protein)
Length = 221
Score = 65.9 bits (159), Expect = 5e-10
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
SL VD LT +T+ ++ F +GR+ V++ + + F FVRF DAE AM
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 110 MNGSILNGATINVSLARL---PQDQHTRPRPTDNQWKGVSEWGEHSKPNKGNRRSARKEW 166
M+G++L+G + V +AR P H+R P ++ G S +G S+ + RRS +
Sbjct: 75 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRY-GSSGYGRRSRSPRRRRRSRSRSR 133
Query: 167 IPLKRNSQSDY 177
+ S+S Y
Sbjct: 134 SRSRSRSRSRY 144
>SFR2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing
factor SC35) (SC-35) (Splicing component, 35 kDa)
Length = 220
Score = 64.3 bits (155), Expect = 2e-09
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
SL VD LT +T+ ++ F +GR+ V++ + + F FVRF DAE AM
Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73
Query: 110 MNGSILNGATINVSLARL---PQDQHTRPRPTDNQWKGVSEWGEHSKPNKGNRRSARKEW 166
M+G++L+G + V +AR P H+R P ++ G +G S+ + RRS +
Sbjct: 74 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGG-GGYGRRSRSPRRRRRSRSRSR 132
Query: 167 IPLKRNSQSDY 177
+ S+S Y
Sbjct: 133 SRSRSRSRSRY 143
>SFR2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) (PR264 protein)
Length = 220
Score = 64.3 bits (155), Expect = 2e-09
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
SL VD LT +T+ ++ F +GR+ V++ + + F FVRF DAE AM
Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73
Query: 110 MNGSILNGATINVSLARL---PQDQHTRPRPTDNQWKGVSEWGEHSKPNKGNRRSARKEW 166
M+G++L+G + V +AR P H+R P ++ G +G S+ + RRS +
Sbjct: 74 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGG-GGYGRRSRSPRRRRRSRSRSR 132
Query: 167 IPLKRNSQSDY 177
+ S+S Y
Sbjct: 133 SRSRSRSRSRY 143
>SFR2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2
(Splicing factor SC35) (SC-35) (Splicing component, 35
kDa) (PR264 protein)
Length = 220
Score = 61.2 bits (147), Expect = 1e-08
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
SL VD LT +T+ ++ F + R+ V++ + + F FVRF DAE AM
Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYRRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73
Query: 110 MNGSILNGATINVSLARL---PQDQHTRPRPTDNQWKGVSEWGEHSKPNKGNRRSARKEW 166
M+G++L+G + V +AR P H+R P ++ G +G S+ + RRS +
Sbjct: 74 MDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGG-GGYGRRSRSPRRRRRSRSRSR 132
Query: 167 IPLKRNSQSDY 177
+ S+S Y
Sbjct: 133 SRSRSRSRSRY 143
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1
(RNA-binding protein RBP1)
Length = 672
Score = 54.7 bits (130), Expect = 1e-06
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 50 SLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRR 109
++FV GL +TT Q+++ F FG IL V + N K GFV+F DAE +++
Sbjct: 361 TVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGK------NCGFVKFEKRIDAEASIQG 414
Query: 110 MNGSILNGATINVSLARLPQDQHTRPRPTDNQWKGVSEWGEHSKPNKGNRRSARKEWIPL 169
+ G I+ G+ I +S R P + + T++ G S++ + G R + +
Sbjct: 415 LQGFIVGGSPIRLSWGR-PSSSNAK---TNSTIMGASQY----MSSNGLRAPSAASSVDN 466
Query: 170 KRNSQSDYPLNYDTLFLPSIEEQDRNPQETQDFLVSNGVH 209
+ Y + LFL ++Q + Q+ +F + H
Sbjct: 467 SKQILEQYAEDKRRLFLHQQQQQQQQQQQDGNFSMEQMAH 506
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC
5.2.1.8) (PPIase E) (Rotamase E) (Cyclophilin E)
(Cyclophilin 33)
Length = 300
Score = 54.3 bits (129), Expect = 2e-06
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 49 KSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMR 108
++++V GL D+ T + NAF FG I + + QR F F+ + DA A+
Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65
Query: 109 RMNGSILNGATINVSLA---RLPQDQHTRPRPTDNQW 142
MN S L G TI V+LA R+ +D +P D+ W
Sbjct: 66 NMNDSELCGRTIRVNLAKPVRVKEDSF-KPIWADDDW 101
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA binding
motif protein 3) (RNPL)
Length = 157
Score = 53.9 bits (128), Expect = 2e-06
Identities = 32/75 (42%), Positives = 40/75 (52%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LFV GL T +++ F+SFG I V V + QR FGF+ F+ A VAMR M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 111 NGSILNGATINVSLA 125
NG L+G I V A
Sbjct: 68 NGESLDGRQIRVDHA 82
>SFR2_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich
2 (Splicing factor SC35) (SC-35) (Splicing component, 35
kDa)
Length = 196
Score = 53.5 bits (127), Expect = 3e-06
Identities = 47/168 (27%), Positives = 78/168 (45%), Gaps = 16/168 (9%)
Query: 33 GLGNNRRADGIHRRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKF 92
G G+ R A I+ SL +D L+ QTT ++ F +G I V + K ++ F
Sbjct: 5 GGGDRRAAPDINGLT--SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGF 62
Query: 93 GFVRFSFDSDAEVAMRRMNGSILNGATINVSLARLPQDQHTRPRPTDNQWKGVSEWGEHS 152
GFVRF DAE A+ R +G +++G + V+LA+ RP+D +G G
Sbjct: 63 GFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKY-------DRPSDE--RGGRGGGGGR 113
Query: 153 KPNKGNRRSAR-----KEWIPLKRNSQSDYPLNYDTLFLPSIEEQDRN 195
+ ++ RR +R + P + S++ P + D P + R+
Sbjct: 114 RRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRS 161
>ROG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP
G) (RNA binding motif protein, X chromosome)
(Glycoprotein p43)
Length = 391
Score = 53.1 bits (126), Expect = 4e-06
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 46 RIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEV 105
R GK LF+ GL +T ++ F +GRI+ V + + + F FV F +DA+
Sbjct: 6 RPGK-LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 106 AMRRMNGSILNGATINVSLARLPQDQHTRPRP 137
A R MNG L+G I V A P + R P
Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPSFESGRRGP 96
>CIRP_HUMAN (Q14011) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 53.1 bits (126), Expect = 4e-06
Identities = 31/84 (36%), Positives = 42/84 (49%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LFV GL+ T ++ F+ +G+I V V + QR FGFV F DA+ AM M
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 111 NGSILNGATINVSLARLPQDQHTR 134
NG ++G I V A D +R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>CIRP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 52.8 bits (125), Expect = 5e-06
Identities = 31/84 (36%), Positives = 42/84 (49%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LFV GL+ T ++ F+ +G+I V V + QR FGFV F DA+ AM M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 111 NGSILNGATINVSLARLPQDQHTR 134
NG ++G I V A D +R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>CIRP_MOUSE (P60824) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 52.8 bits (125), Expect = 5e-06
Identities = 31/84 (36%), Positives = 42/84 (49%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LFV GL+ T ++ F+ +G+I V V + QR FGFV F DA+ AM M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 111 NGSILNGATINVSLARLPQDQHTR 134
NG ++G I V A D +R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>CIRP_CRIGR (P60826) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
Length = 172
Score = 52.8 bits (125), Expect = 5e-06
Identities = 31/84 (36%), Positives = 42/84 (49%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LFV GL+ T ++ F+ +G+I V V + QR FGFV F DA+ AM M
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 111 NGSILNGATINVSLARLPQDQHTR 134
NG ++G I V A D +R
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSR 91
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA binding
motif protein 3)
Length = 153
Score = 51.2 bits (121), Expect = 1e-05
Identities = 31/75 (41%), Positives = 39/75 (51%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LFV GL T +++ F+SFG I V V + QR FGF+ F+ A AMR M
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 111 NGSILNGATINVSLA 125
NG L+G I V A
Sbjct: 68 NGESLDGRQIRVDHA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC
5.2.1.8) (PPIase E) (Rotamase E) (Cyclophilin E)
(Cyclophilin 33)
Length = 301
Score = 51.2 bits (121), Expect = 1e-05
Identities = 54/208 (25%), Positives = 84/208 (39%), Gaps = 31/208 (14%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
L+V GL ++ + AF FG I + + ++ F FV F DA A+ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 111 NGSILNGATINVSLARLPQDQHTRPRP--TDNQW--KGVSEWGEHSKPNKGNRRSARKEW 166
N S L G TI V+LA+ + + RP +D+ W K + E +K +G+
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSE------- 120
Query: 167 IPLKRNSQSDYPLNYDTLFLPSIEEQDRNPQETQDFLVSNGVHKAKIIPMGAMEVALEFD 226
P K +Q P+ ++ NPQ D + N P G +++ L D
Sbjct: 121 -PPKAETQEGEPI---------AKKARSNPQVYMDIKIGNK-------PAGRIQMLLRSD 163
Query: 227 EV---ADMKHFIDTAGSALGKKFDTFQR 251
V A+ + T G K +F R
Sbjct: 164 VVPMTAENFRCLCTHEKGFGFKGSSFHR 191
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial
precursor
Length = 212
Score = 50.4 bits (119), Expect = 2e-05
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 42 GIHRRIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDS 101
G R + L++ GL+ T +K+AF+SF + V K R +GFV F +
Sbjct: 24 GSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISED 83
Query: 102 DAEVAMRRMNGSILNGATINVSLAR 126
A A+ MNG LNG I+V++A+
Sbjct: 84 SANSAISAMNGQELNGFNISVNVAK 108
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic
acid-inducible protein
Length = 157
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/75 (40%), Positives = 42/75 (56%)
Query: 52 FVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRMN 111
FV GL T++ ++NAFAS+G IL V + R FGFV FS ++ A+ MN
Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70
Query: 112 GSILNGATINVSLAR 126
G L+G I V+ A+
Sbjct: 71 GKELDGRNITVNQAQ 85
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC
5.2.1.8) (PPIase E) (Rotamase E) (Cyclophilin E)
(Cyclophilin 33)
Length = 301
Score = 49.7 bits (117), Expect = 4e-05
Identities = 54/208 (25%), Positives = 83/208 (38%), Gaps = 31/208 (14%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
L+V GL ++ + AF FG I + + ++ F FV F DA A+ M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 111 NGSILNGATINVSLARLPQDQHTRPRP--TDNQW--KGVSEWGEHSKPNKGNRRSARKEW 166
N S L G TI V+LA+ + + RP +D+ W K + E +K +G
Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGPE------- 120
Query: 167 IPLKRNSQSDYPLNYDTLFLPSIEEQDRNPQETQDFLVSNGVHKAKIIPMGAMEVALEFD 226
P K +Q P+ ++ NPQ D + N P G +++ L D
Sbjct: 121 -PPKAEAQEGE---------PTAKKARSNPQVYMDIKIGNK-------PAGRIQMLLRSD 163
Query: 227 EV---ADMKHFIDTAGSALGKKFDTFQR 251
V A+ + T G K +F R
Sbjct: 164 VVPMTAENFRCLCTHEKGFGFKGSSFHR 191
>CIRP_XENLA (O93235) Cold-inducible RNA-binding protein
(Glycine-rich RNA-binding protein CIRP) (XCIRP)
Length = 163
Score = 49.7 bits (117), Expect = 4e-05
Identities = 29/75 (38%), Positives = 39/75 (51%)
Query: 51 LFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEVAMRRM 110
LF+ GL +T ++ AF +GRI V V + +R FGFV F DA+ AM M
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 111 NGSILNGATINVSLA 125
NG ++G I V A
Sbjct: 67 NGKSVDGRQIRVDQA 81
>ROG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP
G) (RNA binding motif protein, X chromosome)
Length = 388
Score = 49.3 bits (116), Expect = 5e-05
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 46 RIGKSLFVDGLTDQTTHLQVKNAFASFGRILGVFVQNVKRKQRRSKFGFVRFSFDSDAEV 105
R GK LF+ GL +T ++ F +GRI+ + + + + F FV +DA+
Sbjct: 6 RPGK-LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKD 64
Query: 106 AMRRMNGSILNGATINVSLARLPQDQHTRPRP 137
A R MNG L+G I V A P + R P
Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPFFESGRRGP 96
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,583,080
Number of Sequences: 164201
Number of extensions: 5270767
Number of successful extensions: 13742
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 13384
Number of HSP's gapped (non-prelim): 428
length of query: 989
length of database: 59,974,054
effective HSP length: 120
effective length of query: 869
effective length of database: 40,269,934
effective search space: 34994572646
effective search space used: 34994572646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0404.10