BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0388a.6
(1591 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 529 e-149
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 348 7e-95
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 164 1e-39
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 153 4e-36
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 123 4e-27
YME4_YEAST (Q04711) Transposon Ty1 protein B 106 6e-22
YMD9_YEAST (Q03434) Transposon Ty1 protein B 105 8e-22
YJZ9_YEAST (P47100) Transposon Ty1 protein B 105 8e-22
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 104 2e-21
YMU0_YEAST (Q04670) Transposon Ty1 protein B 104 2e-21
YJZ7_YEAST (P47098) Transposon Ty1 protein B 103 3e-21
YMT5_YEAST (Q04214) Transposon Ty1 protein B 102 6e-21
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 99 1e-19
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 67 5e-10
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 62 2e-08
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 58 2e-07
POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse transcript... 57 5e-07
M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710... 56 7e-07
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 54 3e-06
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 54 3e-06
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 529 bits (1363), Expect = e-149
Identities = 335/1014 (33%), Positives = 537/1014 (52%), Gaps = 57/1014 (5%)
Query: 610 WYLDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGTICVDSSP----CIYNV 665
W +D+ S H T R +F G V G KI G G IC+ ++ + +V
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDV 353
Query: 666 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGS-VLFNSKRKNNIYKIR--LSE 722
V L NL+S L GY+ F + R GS V+ + +Y+ + +
Sbjct: 354 RHVPDLRMNLISGIALDRDGYESYFANQKWRLTK---GSLVIAKGVARGTLYRTNAEICQ 410
Query: 723 LEAQNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRGLPNLKFASDALCEACQKG 782
E + +SV+ +WH+R+GH S + + L+K +L+ K + C+ C G
Sbjct: 411 GELNAAQDEISVD----LWHKRMGHMSEKGLQILAKKSLIS---YAKGTTVKPCDYCLFG 463
Query: 783 KFTKVPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRWTWVKFLTRK 842
K +V F+ + + L+L++ D+ GP++ ES+GG +Y + +DD SR WV L K
Sbjct: 464 KQHRVSFQTSSERKLNI-LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTK 522
Query: 843 DESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQN 902
D+ VF F A V+ E ++ R+RSD+GGE+ + +FE S+GI H+ + P TPQ N
Sbjct: 523 DQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHN 582
Query: 903 GVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYELWKNIK 962
GV ER NRT+ E R+ML+ + K FW EAV TACY+ NR P+ + P +W N +
Sbjct: 583 GVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKE 642
Query: 963 PNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHV 1022
+ S+ FGC + K++ K D KS C+ +GY + G+R ++ K + S V
Sbjct: 643 VSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDV 702
Query: 1023 RFDD---KLDSDQSKLVEK-FADLSINVSDKGKAPEEAEPEEDEPEEEAGP-----SDSQ 1073
F + + +D S+ V+ + + P AE DE E+ +
Sbjct: 703 VFRESEVRTAADMSEKVKNGIIPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGE 762
Query: 1074 TLKKSRITAAHPMELIMGN----KDEPVRTRSAFRPSEETLLSLKGLVSLIEPKSIDEAL 1129
L + HP + + + E R S PS E +L + EP+S+ E L
Sbjct: 763 QLDEGVEEVEHPTQGEEQHQPLRRSERPRVESRRYPSTEYVL----ISDDREPESLKEVL 818
Query: 1130 Q--DKDWIL-AMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARL 1186
+K+ ++ AM+EE+ KN + LV+ P+ + KWVF+ K + +VR KARL
Sbjct: 819 SHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARL 878
Query: 1187 VAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYV 1246
V +G+ Q++GID+ E F+P+ ++ +IR ++S + + ++ + Q+DVK+AFL+G + EE+Y+
Sbjct: 879 VVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYM 938
Query: 1247 HQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFCKTY- 1305
QP GFE K V KL KSLYGLKQAPR WY + SF+ +++ D ++ K +
Sbjct: 939 EQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFS 998
Query: 1306 KDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELTYFLGIQV--DQTPEGT 1363
+++ +++ +YVDD++ ++ L + + F+M +G LG+++ ++T
Sbjct: 999 ENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKL 1058
Query: 1364 YIHQSKYTKELLKKFNMLESTVAKTP----------MHPTCILEKEDASGKVCQKLYRGM 1413
++ Q KY + +L++FNM + TP M PT + EK G + + Y
Sbjct: 1059 WLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEK----GNMAKVPYSSA 1114
Query: 1414 IGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKKTSEY 1472
+GSL+Y + +RPDI +V + +RF +P + H AVK ILRYL+ TT L + S+
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDP 1173
Query: 1473 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTAEAEYISAAICSTQ 1532
L GY DAD AGD RKS++G +SW+SK Q +ALST EAEYI+A +
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233
Query: 1533 KLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV 1586
+W+K L++ + + +YCD+ +AI LSKN + H+R KHI+V+YH+IR+ V
Sbjct: 1234 MIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMV 1287
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 348 bits (893), Expect = 7e-95
Identities = 202/573 (35%), Positives = 324/573 (56%), Gaps = 32/573 (5%)
Query: 1047 SDKGKAPEEAEPEEDEPEEEAGPSDSQTLKKSRITAAHPMEL------------IMGNKD 1094
S+K E + + D+ E+ S + + TA H E+ I+ +
Sbjct: 799 SNKYFLNESKKRKRDDHLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRS 858
Query: 1095 EPVRTRSAFRPSEE------TLLSLKGLVSLIEPKSIDEALQDKD---WILAMEEELNQF 1145
E ++T+ +EE +L+ + + + P S DE D W A+ ELN
Sbjct: 859 ERLKTKPQISYNEEDNSLNKVVLNAHTIFNDV-PNSFDEIQYRDDKSSWEEAINTELNAH 917
Query: 1146 SKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDYTETFAP 1205
N+ W++ K+PE+ +++ ++WVF K NE G+ +R KARLVA+G++Q+ IDY ETFAP
Sbjct: 918 KINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAP 977
Query: 1206 IARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLK 1265
+AR+ + R ++S + +N+ +HQMDVK+AFLNG + EE+Y+ P G D+V KL
Sbjct: 978 VARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNS--DNVCKLN 1035
Query: 1266 KSLYGLKQAPRAWYERLSSFLLENEFVRGKVDTTLFC--KTYKDDILVVQIYVDDIIFGS 1323
K++YGLKQA R W+E L E EFV VD ++ K ++ + V +YVDD++ +
Sbjct: 1036 KAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIAT 1095
Query: 1324 ANQSLCKEFSKMMQAEFEMSMMGELTYFLGIQVDQTPEGTYIHQSKYTKELLKKFNMLES 1383
+ + F + + +F M+ + E+ +F+GI+++ + Y+ QS Y K++L KFNM
Sbjct: 1096 GDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENC 1155
Query: 1384 TVAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPR 1442
TP+ P+ I + S + C R +IG L+Y + +RPD+ +V++ +R+ S
Sbjct: 1156 NAVSTPL-PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNN 1214
Query: 1443 ETHLTAVKRILRYLKDTTNLGLMYKK--TSEYKLSGYCDADYAGDRTERKSTSGNC-QFL 1499
+KR+LRYLK T ++ L++KK E K+ GY D+D+AG +RKST+G +
Sbjct: 1215 SELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMF 1274
Query: 1500 GSNLVSWESKRQSTIALSTAEAEYISAAICSTQKLWMKHQLEDYQI-LESNIPIYCDNTA 1558
NL+ W +KRQ+++A S+ EAEY++ + LW+K L I LE+ I IY DN
Sbjct: 1275 DFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQG 1334
Query: 1559 AISLSKNPILHSRAKHIEVKYHFIRDYV*KGVL 1591
IS++ NP H RAKHI++KYHF R+ V V+
Sbjct: 1335 CISIANNPSCHKRAKHIDIKYHFAREQVQNNVI 1367
Score = 182 bits (463), Expect = 5e-45
Identities = 124/411 (30%), Positives = 213/411 (51%), Gaps = 24/411 (5%)
Query: 612 LDSGCSRHMTGERRMFQE-LKLKPGGEVGFGGNEKGKIV-----GTGTICVDSSPCIYNV 665
LDSG S H+ + ++ + +++ P ++ ++G+ + G + D + +V
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVA--KQGEFIYATKRGIVRLRNDHEITLEDV 348
Query: 666 LLVDGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEA 725
L NL+S+ +L + G + F+ KS +S+ V+ NS NN+ I +A
Sbjct: 349 LFCKEAAGNLMSVKRLQEAGMSIEFD-KSGVTISKNGLMVVKNSGMLNNVPVINF---QA 404
Query: 726 QNVKCLLSVNEEQWVWHRRLGHASMRKISQLSKLNLVRG---LPNLKFASDALCEACQKG 782
++ N +WH R GH S K+ ++ + N+ L NL+ + + +CE C G
Sbjct: 405 YSINAKHKNNFR--LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCE-ICEPCLNG 461
Query: 783 KFTKVPFKA-KNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRWTWVKFLTR 841
K ++PFK K+ RPL ++H D+ GP+ ++ K Y +I VD ++ + +
Sbjct: 462 KQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKY 521
Query: 842 KDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQ 901
K + ++F F+A+ + ++V + D+G E+ +++ GI++ + P TPQ
Sbjct: 522 KSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQL 581
Query: 902 NGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPIL--NKTPYELWK 959
NGV ER RT+ E ARTM+ + K FW EAV TA Y+ NRI R ++ +KTPYE+W
Sbjct: 582 NGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWH 641
Query: 960 NIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFYN 1010
N KP + + FG YV + K++ KFD KS K + +GY GF+ ++
Sbjct: 642 NKKPYLKHLRVFGATVYV-HIKNKQGKFDDKSFKSIFVGY--EPNGFKLWD 689
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 164 bits (416), Expect = 1e-39
Identities = 97/309 (31%), Positives = 166/309 (53%), Gaps = 17/309 (5%)
Query: 1229 MDVKSAFLNGYISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLE 1288
MDV +AFLN + E +YV QPPGF +E+ PD+V++L +YGLKQAP W E +++ L +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1289 NEFVRGKVDTTLFCKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGEL 1348
F R + + L+ ++ D + + +YVDD++ + + + + + + M +G++
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1349 TYFLGIQVDQTPEG-------TYIHQSKYTKELLKKFNMLESTVAKT-PMHPTCILEKED 1400
FLG+ + Q+ G YI ++ E + F + ++ + + P+ T +D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESE-INTFKLTQTPLCNSKPLFETTSPHLKD 179
Query: 1401 ASGKVCQKLYRGMIGSLLY-LTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDT 1459
+ Y+ ++G LL+ RPDI + V L +RF +PR HL + +R+LRYL T
Sbjct: 180 ITP------YQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTT 233
Query: 1460 TNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKR-QSTIALST 1518
++ L Y+ S+ L+ YCDA + ST G L V+W SK+ + I + +
Sbjct: 234 RSMCLKYRSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPS 293
Query: 1519 AEAEYISAA 1527
EAEYI+A+
Sbjct: 294 TEAEYITAS 302
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 153 bits (386), Expect = 4e-36
Identities = 75/222 (33%), Positives = 127/222 (56%), Gaps = 1/222 (0%)
Query: 1314 IYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGELTYFLGIQVDQTPEGTYIHQSKYTKE 1373
+YVDDI+ ++ +L + + F M +G + YFLGIQ+ P G ++ Q+KY ++
Sbjct: 5 LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64
Query: 1374 LLKKFNMLESTVAKTPMHPTCILEKEDASGKVCQKLYRGMIGSLLYLTASRPDILFSVHL 1433
+L ML+ TP+ P + + +R ++G+L YLT +RPDI ++V++
Sbjct: 65 ILNNAGMLDCKPMSTPL-PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123
Query: 1434 CARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKKTSEYKLSGYCDADYAGDRTERKSTS 1493
+ +P +KR+LRY+K T GL K S+ + +CD+D+AG + R+ST+
Sbjct: 124 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 183
Query: 1494 GNCQFLGSNLVSWESKRQSTIALSTAEAEYISAAICSTQKLW 1535
G C FLG N++SW +KRQ T++ S+ E EY + A+ + + W
Sbjct: 184 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 123 bits (309), Expect = 4e-27
Identities = 114/388 (29%), Positives = 179/388 (45%), Gaps = 36/388 (9%)
Query: 671 LTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RLSE 722
+ ++LLS+S+LA++ F + + + + DG+VL + + Y + +S+
Sbjct: 518 IAYDLLSLSELANQNITACFTRNT---LERSDGTVLAPIVKHGDFYWLSKKYLIPSHISK 574
Query: 723 LEAQNVKCLLSVNEEQW-VWHRRLGHASMRKISQLSKLNLVRGLPNLKF----ASDALCE 777
L NV SVN+ + + HR LGHA+ R I + K N V L AS C
Sbjct: 575 LTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCP 634
Query: 778 ACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRWT 834
C GK TK V + P + LH D+FGPV Y + D+ +R+
Sbjct: 635 DCLIGKSTKHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQ 694
Query: 835 WVKFL-TRKDESHA-VFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHD 892
WV L R++ES VF++ +A ++N+ R++ ++ D G E+ N F + GI
Sbjct: 695 WVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITAC 754
Query: 893 FSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNK 952
++ + +GV ER NRTL RT+L +G+ H W AV + I+N + V P +K
Sbjct: 755 YTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL-VSPKNDK 813
Query: 953 TPYELWKNIKPNISYFHPFGCVCYVLNTKDRLHKFDAKSSKCLLLGY----SERSKGFRF 1008
+ + +I+ PFG V N H D+K + GY S S G+
Sbjct: 814 SARQHAGLAGLDITTILPFGQPVIVNN-----HNPDSKIHPRGIPGYALHPSRNSYGYII 868
Query: 1009 YNTD-AKTIEESIHVRFDDKLDSDQSKL 1035
Y KT++ + +V DK QSKL
Sbjct: 869 YLPSLKKTVDTTNYVILQDK----QSKL 892
Score = 104 bits (259), Expect = 2e-21
Identities = 114/469 (24%), Positives = 223/469 (47%), Gaps = 62/469 (13%)
Query: 1095 EPVRTRSAFRPSEETLLSLKGLVSLIEPKSI---DEAL------QDKD-WILAMEEELNQ 1144
EP R++ + ++KG+ S+ ++ DEA+ ++KD ++ A +E++Q
Sbjct: 1220 EPPRSKKRIN----LIAAIKGVKSIKPVRTTLRYDEAITYNKDNKEKDRYVEAYHKEISQ 1275
Query: 1145 FSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDY 1199
K + W K + VI + ++F N+K D +KAR VA+G Q
Sbjct: 1276 LLKMNTWDTNKYYDRNDIDPKKVINSMFIF----NKKRDGT-HKARFVARGDIQHPDTYD 1330
Query: 1200 TETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPP--GFEDEKK 1257
++ + A+ +S +++++ + Q+D+ SA+L I EE+Y+ PP G D+
Sbjct: 1331 SDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDK-- 1388
Query: 1258 PDHVFKLKKSLYGLKQAPRAWYERLSSFLL---ENEFVRGKVDTTLFCKTYKDDILVVQI 1314
+ +L+KSLYGLKQ+ WYE + S+L+ + + VRG + +K+ + + +
Sbjct: 1389 ---LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRG------WSCVFKNSQVTICL 1439
Query: 1315 YVDDIIFGSANQSLCKEFSKMMQAEFEMSMM------GELTY-FLGIQVD-QTPEGTYIH 1366
+VDD+I S + + K+ ++ +++ ++ E+ Y LG+++ Q + +
Sbjct: 1440 FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLG 1499
Query: 1367 QSKYTKELLKKFNMLESTVAK---TPMHPTCILEKEDA---SGKVCQKLY--RGMIGSLL 1418
K E L K N+ + K P P +++++ + +K++ + +IG
Sbjct: 1500 MEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLAS 1559
Query: 1419 YLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKKTS----EYK 1473
Y+ R D+L+ ++ A+ P L +++++ DT + L++ K + K
Sbjct: 1560 YVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNK 1619
Query: 1474 LSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTAEAE 1522
L DA Y G++ KS GN L ++ +S + S ST EAE
Sbjct: 1620 LVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE 1667
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 106 bits (264), Expect = 6e-22
Identities = 103/423 (24%), Positives = 197/423 (46%), Gaps = 46/423 (10%)
Query: 1130 QDKDWILAMEEELNQFSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKA 1184
+ + +I A +E+NQ K + W K + + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1185 RLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1244
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1245 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 1301
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 1302 CKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMM------GELTY-FLGI 1354
+K+ + + ++VDD+I S + + K+ ++ +++ ++ E+ Y LG+
Sbjct: 985 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1355 QVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKEDA---SGKVC 1406
++ + G Y + E + K N+ + P P +++++ +
Sbjct: 1045 EI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYK 1103
Query: 1407 QKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLG 1463
+K++ + +IG Y+ R D+L+ ++ A+ P L +++++ DT +
Sbjct: 1104 EKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQ 1163
Query: 1464 LMYKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTA 1519
L++ K + KL DA Y G++ KS GN L ++ +S + S ST
Sbjct: 1164 LIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTT 1222
Query: 1520 EAE 1522
EAE
Sbjct: 1223 EAE 1225
Score = 102 bits (254), Expect = 8e-21
Identities = 122/537 (22%), Positives = 207/537 (37%), Gaps = 68/537 (12%)
Query: 612 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIYNVLLV 668
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 669 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 720
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 721 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 775
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 776 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSR 832
C C GK TK + ++ P + LH D+FGPV + Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 833 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 890
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 891 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRIS----- 945
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 946 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 982
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 983 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1042
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1043 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPME 1087
+I ++ E PE+ P + PS DS+ + K+ I A ++
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVD 562
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 105 bits (263), Expect = 8e-22
Identities = 105/423 (24%), Positives = 198/423 (45%), Gaps = 46/423 (10%)
Query: 1130 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1184
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 873
Query: 1185 RLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1244
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1245 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 1301
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 1302 CKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMM------GELTY-FLGI 1354
+K+ + + ++VDD+I S + + K+ ++ +++ ++ E+ Y LG+
Sbjct: 985 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1044
Query: 1355 QVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKEDA---SGKVC 1406
++ + G Y + E + K N+ + P P +++++ +
Sbjct: 1045 EI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYK 1103
Query: 1407 QKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLG 1463
+K++ + +IG Y+ R D+L+ ++ A+ P L +++++ DT +
Sbjct: 1104 EKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQ 1163
Query: 1464 LMYKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTA 1519
L++ K + KL DA Y G++ KS GN L ++ +S + S ST
Sbjct: 1164 LIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTT 1222
Query: 1520 EAE 1522
EAE
Sbjct: 1223 EAE 1225
Score = 102 bits (254), Expect = 8e-21
Identities = 122/537 (22%), Positives = 207/537 (37%), Gaps = 68/537 (12%)
Query: 612 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIYNVLLV 668
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 669 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 720
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 721 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 775
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDYQ 209
Query: 776 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSR 832
C C GK TK + ++ P + LH D+FGPV + Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 833 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 890
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 891 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRIS----- 945
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 946 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 982
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 983 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1042
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1043 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPME 1087
+I ++ E PE+ P + PS DS+ + K+ I A ++
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVD 562
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 105 bits (263), Expect = 8e-22
Identities = 116/468 (24%), Positives = 212/468 (44%), Gaps = 48/468 (10%)
Query: 1130 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1184
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 1185 RLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1244
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 1245 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 1301
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRG------W 1411
Query: 1302 CKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMG------ELTY-FLGI 1354
+K+ + + ++VDD++ S N + K + ++ +++ ++ E+ Y LG+
Sbjct: 1412 SCVFKNSQVTICLFVDDMVLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGL 1471
Query: 1355 QVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCI-----LEKEDASGK 1404
++ + G Y + E + K N+ + P P LE E+ K
Sbjct: 1472 EI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK 1530
Query: 1405 VCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLG 1463
+ + +IG Y+ R D+L+ ++ A+ P + L +++++ +T +
Sbjct: 1531 MKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQ 1590
Query: 1464 LMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTA 1519
L++ K+ KL DA Y G++ KS GN L ++ +S + S ST
Sbjct: 1591 LIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTT 1649
Query: 1520 EAEY--ISAAICSTQKLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 1565
EAE IS ++ L Q D + + + +T +I +S N
Sbjct: 1650 EAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNN 1697
Score = 102 bits (254), Expect = 8e-21
Identities = 122/537 (22%), Positives = 207/537 (37%), Gaps = 68/537 (12%)
Query: 612 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIYNVLLV 668
LDSG SR + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 669 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 720
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 576
Query: 721 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 775
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 776 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSR 832
C C GK TK + ++ P + LH D+FGPV + Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 833 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 890
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 891 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRIS----- 945
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 946 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 982
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 983 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1042
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 932
Query: 1043 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPME 1087
+I ++ E PE+ P + PS DS+ + K+ I A ++
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVD 989
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 104 bits (260), Expect = 2e-21
Identities = 114/478 (23%), Positives = 205/478 (42%), Gaps = 57/478 (11%)
Query: 1140 EELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVVRNKARLVAQGYSQQEGIDY 1199
+++ F + +S + P+++ ++ T +F K N KAR+V +G +Q Y
Sbjct: 1301 KDMKVFDVDVKYSRSEIPDNL-IVPTNTIFTKKRNGI-----YKARIVCRGDTQSPDT-Y 1353
Query: 1200 TETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEVYVHQPPGFEDEKKPD 1259
+ I++ + + N N+ + +D+ AFL + EE+Y+ P D +
Sbjct: 1354 SVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEEEIYIPHP---HDRRC-- 1408
Query: 1260 HVFKLKKSLYGLKQAPRAWYERLSSFL-----LENEFVRGKVDTTLFCKTYKDDILVVQI 1314
V KL K+LYGLKQ+P+ W + L +L +N + G T +D L++ +
Sbjct: 1409 -VVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDNSYTPGLYQT-------EDKNLMIAV 1460
Query: 1315 YVDDIIFGSANQSLCKEFSKMMQAEFEMSMMGEL------TYFLGIQ---------VDQT 1359
YVDD + ++N+ EF +++ FE+ + G L T LG+ +D T
Sbjct: 1461 YVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTIDLT 1520
Query: 1360 PEGTYIHQSKYTKELLKKFNMLE----STVAKTPMHPTCILEKEDASGKVCQKLYRGMIG 1415
+ K E LKK ST P + +E+ V + + ++G
Sbjct: 1521 LKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLK--LQQLLG 1578
Query: 1416 SLLYLT-ASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKK--TSEY 1472
L Y+ R DI F+V AR + P E + +I++YL ++G+ Y + +
Sbjct: 1579 ELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKDK 1638
Query: 1473 KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTAEAE----YISAAI 1528
K+ DA G + +S G + G N+ + S + + +S+ EAE Y A
Sbjct: 1639 KVIAITDAS-VGSEYDAQSRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYAD 1697
Query: 1529 CSTQKLWMKHQLEDYQILESNIPIYCDNTAAISLSKNPILHSRAKHIEVKYHFIRDYV 1586
T K+ +K E ++I + D+ AI + K +K I++ +
Sbjct: 1698 SETLKVTLKELGEGD---NNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKI 1752
Score = 91.3 bits (225), Expect = 2e-17
Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 11/276 (3%)
Query: 742 HRRLGHASMRKISQLSKLN-LVRGLPNLKFASDALCEACQKGKFTK---VPFKAKNVVST 797
H+R+GH +++I K N L +K ++ C+ C+ K TK N +
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 798 SRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRW--TWVKFLTRKDESHAVFSTFIAQ 855
P +D+FGPV S + KRY +I+VD+ +R+ T F + A I
Sbjct: 622 HEPGSSWCMDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQY 681
Query: 856 VQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 915
V+ + ++ + SD G EF ND+ E F S GI H + + NG ER RT+
Sbjct: 682 VETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITD 741
Query: 916 ARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYELWKN--IKPNISYFHPFGC 973
A T+L+++ + FW AV +A I+N + + K P + + + F PFG
Sbjct: 742 ATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKS-TGKLPLKAISRQPVTVRLMSFLPFGE 800
Query: 974 VCYVLNTKDRLHKFDAKSSKCLLLGYSERSKGFRFY 1009
+ N + K ++L S G++F+
Sbjct: 801 KGIIWNHNHK--KLKPSGLPSIILCKDPNSYGYKFF 834
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 104 bits (259), Expect = 2e-21
Identities = 107/428 (25%), Positives = 197/428 (46%), Gaps = 56/428 (13%)
Query: 1130 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1184
+ + +I A +E+NQ K W K+ + VI + ++F K + +KA
Sbjct: 819 EKEKYIQAYHKEVNQLLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1185 RLVAQGYSQQEGIDYTETFAPIARLE-----AIRLLISFSVNHNIVLHQMDVKSAFLNGY 1239
R VA+G I + +T+ P + A+ +S ++++N + Q+D+ SA+L
Sbjct: 874 RFVARG-----DIQHPDTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYAD 928
Query: 1240 ISEEVYVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKV 1296
I EE+Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG
Sbjct: 929 IKEELYIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG-- 983
Query: 1297 DTTLFCKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMM------GELTY 1350
+ +K+ + + ++VDD+I S + + K+ ++ +++ ++ E+ Y
Sbjct: 984 ----WSCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQY 1039
Query: 1351 -FLGIQVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCI-----LEKE 1399
LG+++ + G Y + E + K N+ + P P LE E
Sbjct: 1040 DILGLEI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELE 1098
Query: 1400 DASGKVCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKD 1458
+ K+ + +IG Y+ R D+L+ ++ A+ P + L +++++ +
Sbjct: 1099 EDDYKMKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWN 1158
Query: 1459 TTNLGLMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTI 1514
T + L++ K+ KL DA Y G++ KS GN L ++ +S + S
Sbjct: 1159 TRDKQLIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLT 1217
Query: 1515 ALSTAEAE 1522
ST EAE
Sbjct: 1218 CTSTTEAE 1225
Score = 102 bits (254), Expect = 8e-21
Identities = 122/537 (22%), Positives = 207/537 (37%), Gaps = 68/537 (12%)
Query: 612 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIYNVLLV 668
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 669 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 720
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 721 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 775
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 776 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSR 832
C C GK TK + ++ P + LH D+FGPV + Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 833 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 890
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 891 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRIS----- 945
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 946 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 982
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 983 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1042
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQQSDDL 505
Query: 1043 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPME 1087
+I ++ E PE+ P + PS DS+ + K+ I A ++
Sbjct: 506 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVD 562
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 103 bits (258), Expect = 3e-21
Identities = 105/423 (24%), Positives = 197/423 (45%), Gaps = 46/423 (10%)
Query: 1130 QDKDWILAMEEELNQFSKNDVWSLV-----KKPESVHVIGTKWVFRNKLNEKGDVVRNKA 1184
+ + +I A +E+NQ K W K+ + VI + ++F N+K D +KA
Sbjct: 1246 EKEKYIEAYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIF----NKKRDGT-HKA 1300
Query: 1185 RLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1244
R VA+G Q T + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 1301 RFVARGDIQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 1360
Query: 1245 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 1301
Y+ PP D + +LKKS YGLKQ+ WYE + S+L++ E VRG +
Sbjct: 1361 YIRPPPHLGMN---DKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 1411
Query: 1302 CKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMM------GELTY-FLGI 1354
+K+ + + ++VDD+I S + + K+ ++ +++ ++ E+ Y LG+
Sbjct: 1412 SCVFKNSQVTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGL 1471
Query: 1355 QVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCILEKEDA---SGKVC 1406
++ + G Y + E + K N+ + P P +++++ +
Sbjct: 1472 EI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYK 1530
Query: 1407 QKLY--RGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLG 1463
+K++ + +IG Y+ R D+L+ ++ A+ P L +++++ DT +
Sbjct: 1531 EKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQ 1590
Query: 1464 LMYKKTS----EYKLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTA 1519
L++ K + KL DA Y G++ KS GN L ++ +S + S ST
Sbjct: 1591 LIWHKNKPTEPDNKLVAISDASY-GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTT 1649
Query: 1520 EAE 1522
EAE
Sbjct: 1650 EAE 1652
Score = 102 bits (253), Expect = 1e-20
Identities = 122/537 (22%), Positives = 207/537 (37%), Gaps = 68/537 (12%)
Query: 612 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIYNVLLV 668
LDSG SR + P V I G + D++ VL
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 669 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 720
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 520 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVQYGDFYWVSKRYLLPSNI 576
Query: 721 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 775
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 577 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 636
Query: 776 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSR 832
C C GK TK + ++ P + LH D+FGPV + Y + D+ ++
Sbjct: 637 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 696
Query: 833 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 890
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 697 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 756
Query: 891 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRIS----- 945
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 757 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 816
Query: 946 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 982
+ +L + + PN S HP G Y L+
Sbjct: 817 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 875
Query: 983 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1042
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 876 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYQSFIASNEIQESNDL 932
Query: 1043 SINVSDKGKAPEEAEPEED--------EPEEEAGPS----DSQTLKKSRITAAHPME 1087
+I ++ E PE+ P + PS DS+ + K+ I A ++
Sbjct: 933 NIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVD 989
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 102 bits (255), Expect = 6e-21
Identities = 113/468 (24%), Positives = 209/468 (44%), Gaps = 48/468 (10%)
Query: 1130 QDKDWILAMEEELNQFSKNDVWSLVK-----KPESVHVIGTKWVFRNKLNEKGDVVRNKA 1184
+ + +I A +E+NQ K W K + + VI + ++F K + +KA
Sbjct: 819 EKEKYIEAYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKRDGT-----HKA 873
Query: 1185 RLVAQGYSQQEGIDYTETFAPIARLEAIRLLISFSVNHNIVLHQMDVKSAFLNGYISEEV 1244
R VA+G Q + + A+ +S ++++N + Q+D+ SA+L I EE+
Sbjct: 874 RFVARGDIQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEEL 933
Query: 1245 YVHQPPGFEDEKKPDHVFKLKKSLYGLKQAPRAWYERLSSFLLEN---EFVRGKVDTTLF 1301
Y+ PP D + +LKKSLYGLKQ+ WYE + S+L++ E VRG +
Sbjct: 934 YIRPPPHLGMN---DKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRG------W 984
Query: 1302 CKTYKDDILVVQIYVDDIIFGSANQSLCKEFSKMMQAEFEMSMMG------ELTY-FLGI 1354
+++ + + ++VDD++ S N + K ++ +++ ++ E+ Y LG+
Sbjct: 985 SCVFENSQVTICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGL 1044
Query: 1355 QVDQTPEGTY--IHQSKYTKELLKKFNM---LESTVAKTPMHPTCI-----LEKEDASGK 1404
++ + G Y + E + K N+ + P P LE E+ K
Sbjct: 1045 EI-KYQRGKYMKLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYK 1103
Query: 1405 VCQKLYRGMIGSLLYLTAS-RPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLG 1463
+ + +IG Y+ R D+L+ ++ A+ P + L +++++ +T +
Sbjct: 1104 MKVHEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQ 1163
Query: 1464 LMYKKTSEY----KLSGYCDADYAGDRTERKSTSGNCQFLGSNLVSWESKRQSTIALSTA 1519
L++ K+ KL DA Y G++ KS GN L ++ +S + S ST
Sbjct: 1164 LIWHKSKPVKPTNKLVVISDASY-GNQPYYKSQIGNIYLLNGKVIGGKSTKASLTCTSTT 1222
Query: 1520 EAEY--ISAAICSTQKLWMKHQLEDYQILESNIPIYCDNTAAISLSKN 1565
EAE IS ++ L Q D + + + +T +I +S N
Sbjct: 1223 EAEIHAISESVPLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNN 1270
Score = 101 bits (251), Expect = 2e-20
Identities = 122/537 (22%), Positives = 207/537 (37%), Gaps = 68/537 (12%)
Query: 612 LDSGCSRHMTGERRMFQELKLKPGGEVGFGGNEKGKIVGTGTICV---DSSPCIYNVLLV 668
LDSG SR + P V I G + D++ VL
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 669 DGLTHNLLSISQLADKGYDVIFNQKSCRAVSQIDGSVLFNSKRKNNIYKI--------RL 720
+ ++LLS+++LA F + + + DG+VL + + Y + +
Sbjct: 93 PNIAYDLLSLNELAAVDITACFTKN---VLERSDGTVLAPIVKYGDFYWVSKKYLLPSNI 149
Query: 721 SELEAQNVKCLLSVNEEQWVW-HRRLGHASMRKISQLSKLNLVRGLP----NLKFASDAL 775
S NV S + + + HR L HA+ + I K N + + A D
Sbjct: 150 SVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQ 209
Query: 776 CEACQKGKFTK---VPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSR 832
C C GK TK + ++ P + LH D+FGPV + Y + D+ ++
Sbjct: 210 CPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIFGPVHNLPKSAPSYFISFTDETTK 269
Query: 833 WTWVKFL--TRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIA 890
+ WV L R+D VF+T +A ++N+ ++ ++ D G E+ N + GI
Sbjct: 270 FRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGIT 329
Query: 891 HDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRIS----- 945
++ + +GV ER NRTL + RT LQ +G+ H W A+ + ++N ++
Sbjct: 330 PCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK 389
Query: 946 -------------VRPILNKTPYELWKNIKPNISYFHPFGCVCYVLNTK----------D 982
+ +L + + PN S HP G Y L+
Sbjct: 390 KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN-SKIHPRGIPGYALHPSRNSYGYIIYLP 448
Query: 983 RLHKFDAKSSKCLLLGYSERSKGFRFYNTDAKTIEESIHVRFDDKLDSDQSKLVEKFADL 1042
L K ++ +L G R F N DA T +E ++ S +++ DL
Sbjct: 449 SLKKTVDTTNYVILQGKESRLDQF---NYDALTFDEDLNRLTASYHSFIASNEIQQSNDL 505
Query: 1043 SINVSDKGKAPEEAEPEE--------DEPEEEAGPS----DSQTLKKSRITAAHPME 1087
+I ++ E PE+ P + PS DS+ + K+ I A ++
Sbjct: 506 NIESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIRAPREVD 562
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 98.6 bits (244), Expect = 1e-19
Identities = 45/97 (46%), Positives = 67/97 (68%)
Query: 1121 EPKSIDEALQDKDWILAMEEELNQFSKNDVWSLVKKPESVHVIGTKWVFRNKLNEKGDVV 1180
EPKS+ AL+D W AM+EEL+ S+N W LV P + +++G KWVF+ KL+ G +
Sbjct: 27 EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86
Query: 1181 RNKARLVAQGYSQQEGIDYTETFAPIARLEAIRLLIS 1217
R KARLVA+G+ Q+EGI + ET++P+ R IR +++
Sbjct: 87 RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILN 123
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 66.6 bits (161), Expect = 5e-10
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 1418 LYLTASRPDILFSVHLCARFQSDPRETHLTAVKRILRYLKDTTNLGLMYKKTSEYKLSGY 1477
+YLT +RPD+ F+V+ ++F S R + AV ++L Y+K T GL Y TS+ +L +
Sbjct: 1 MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60
Query: 1478 CDADYAGDRTERKSTSGNCQFL 1499
D+D+A R+S +G C +
Sbjct: 61 ADSDWASCPDTRRSVTGFCSLV 82
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 61.6 bits (148), Expect = 2e-08
Identities = 69/276 (25%), Positives = 116/276 (42%), Gaps = 19/276 (6%)
Query: 691 NQKSCRAVSQIDGSVLFNSKRKNNIYKIRLSELEAQNVKCLLSVNEEQWVWHRRLGHASM 750
+Q+ RA+ + N +++ KI L + EA L++ ++ W LG+ +
Sbjct: 806 DQEEARAIGATENKDTRNWEKEG---KIVLPQKEA------LAMIQQMHAW-THLGNRKL 855
Query: 751 RKISQLSKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTSRPLELLHIDLFG 810
+ + + + + R ++ + A C+ CQ+ A +RP ID F
Sbjct: 856 KLLIEKTDFLIPRASTLIEQVTSA-CKVCQQVNAGATRVPAGKRTRGNRPGVYWEID-FT 913
Query: 811 PVKSESIGGKRYGMIIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSD 870
VK G K Y ++ VD +S W F TR++ +H V + ++ V + SD
Sbjct: 914 EVKPHYAGYK-YLLVFVDTFSGWVEA-FPTRQETAHIVAKKILEEIFPRFGLPKV-IGSD 970
Query: 871 HGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFW 930
+G F + + L GI C PQ +G VER NRT++E + ETG+ W
Sbjct: 971 NGPAFVSQVSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--W 1028
Query: 931 TEAVNTACYIQNRISVRPILNKTPYELWKNIKPNIS 966
++ A R TPYE+ P +S
Sbjct: 1029 RRLLSLALLRARNTPNR--FGLTPYEILYGGPPPLS 1062
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 57.8 bits (138), Expect = 2e-07
Identities = 62/231 (26%), Positives = 98/231 (41%), Gaps = 14/231 (6%)
Query: 744 RLGHASMRKISQL-----SKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTS 798
RL H +K+ L S ++ L++ +D+ C C + +K A V
Sbjct: 849 RLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVRGH 907
Query: 799 RPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQN 858
RP ID F VK + G +Y ++ VD +S W F T+++ + V + ++
Sbjct: 908 RPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEIFP 964
Query: 859 EKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMART 918
V + SD+G F + +S+ D GI C PQ +G VER NRT++E
Sbjct: 965 RFGMPQV-LGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTK 1023
Query: 919 MLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFH 969
+ G W + A Y + R + P TPYE+ P + FH
Sbjct: 1024 LTLAAGTRD--WVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNFH 1070
>POL_FENV1 (P31792) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 1046
Score = 56.6 bits (135), Expect = 5e-07
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 12/193 (6%)
Query: 776 CEACQK--GKFTKVPFKAKNVVSTSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRW 833
C+ CQ+ T+VP + +RP ID F VK G K Y ++ VD +S W
Sbjct: 737 CKVCQQVNAGATRVPEGKRT--RGNRPGVYWEID-FTEVKPHYAGYK-YLLVFVDTFSGW 792
Query: 834 TWVKFLTRKDESHAVFSTFIAQVQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDF 893
+ TR++ +H V + ++ V + SD+G F + + L + GI
Sbjct: 793 VEA-YPTRQETAHMVAKKILEEIFPRFGLPKV-IGSDNGPAFVSQVSQGLARTLGINWKL 850
Query: 894 SCPRTPQQNGVVERKNRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKT 953
C PQ +G VER NRT++E + ETG+ W ++ A R T
Sbjct: 851 HCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--WRRLLSLALLRARNTPNR--FGLT 906
Query: 954 PYELWKNIKPNIS 966
PYE+ P +S
Sbjct: 907 PYEILYGGPPPLS 919
>M710_ARATH (P92512) Hypothetical mitochondrial protein AtMg00710
(ORF120)
Length = 120
Score = 56.2 bits (134), Expect = 7e-07
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 909 NRTLQEMARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYF 968
NRT+ E R+ML E G+ K F +A NTA +I N+ I P E+W P SY
Sbjct: 2 NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61
Query: 969 HPFGCVCYV 977
FGCV Y+
Sbjct: 62 RRFGCVAYI 70
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 54.3 bits (129), Expect = 3e-06
Identities = 62/233 (26%), Positives = 98/233 (41%), Gaps = 20/233 (8%)
Query: 744 RLGHASMRKISQLSK--------LNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVV 795
+L H S K+ L + LN R L N+ C+AC + +K K V
Sbjct: 849 QLTHLSFSKMKALLERSHSPYYMLNRDRTLKNIT----ETCKACAQVNASKSAVKQGTRV 904
Query: 796 STSRPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRWTWVKFLTRKDESHAVFSTFIAQ 855
RP ID F +K + G +Y ++ +D +S W F T+K+ + V + +
Sbjct: 905 RGHRPGTHWEID-FTEIKP-GLYGYKYLLVFIDTFSGWIEA-FPTKKETAKVVTKKLLEE 961
Query: 856 VQNEKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEM 915
+ V + +D+G F + +++ D GI C PQ +G VER NRT++E
Sbjct: 962 IFPRFGMPQV-LGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKET 1020
Query: 916 ARTMLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYF 968
+ TG W + A Y + R + P TPYE+ P + F
Sbjct: 1021 LTKLTLATG--SRDWVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNF 1069
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 54.3 bits (129), Expect = 3e-06
Identities = 62/231 (26%), Positives = 98/231 (41%), Gaps = 15/231 (6%)
Query: 744 RLGHASMRKISQL-----SKLNLVRGLPNLKFASDALCEACQKGKFTKVPFKAKNVVSTS 798
RL H +K+ L S ++ L++ +D+ C C + +K A V
Sbjct: 497 RLTHLGYQKMKALLDRGESPYYMLNRDKTLQYVADS-CTVCAQVNASKAKIGAGVRVRGH 555
Query: 799 RPLELLHIDLFGPVKSESIGGKRYGMIIVDDYSRWTWVKFLTRKDESHAVFSTFIAQVQN 858
RP ID F VK + G +Y ++ VD +S W F T+++ + V + ++
Sbjct: 556 RPGSHWEID-FTEVKP-GLYGYKYLLVFVDTFSGWVEA-FPTKRETARVVSKKLLEEIFP 612
Query: 859 EKACRIVRVRSDHGGEFENDKFESLFDSYGIAHDFSCPRTPQQNGVVERKNRTLQEMART 918
V + SD+G F + +S+ D GI C PQ +G VER NRT++E
Sbjct: 613 RFGMPQV-LGSDNGPAFTSQVSQSVADLLGI-DKLHCAYRPQSSGQVERMNRTIKETLTK 670
Query: 919 MLQETGMAKHFWTEAVNTACYIQNRISVRPILNKTPYELWKNIKPNISYFH 969
+ G W + A Y + R + P TPYE+ P + FH
Sbjct: 671 LTLAAGTRD--WVLLLPLALY-RARNTPGP-HGLTPYEILYGAPPPLVNFH 717
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.332 0.142 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,949,786
Number of Sequences: 164201
Number of extensions: 6567741
Number of successful extensions: 29977
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 29665
Number of HSP's gapped (non-prelim): 241
length of query: 1591
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1467
effective length of database: 39,613,130
effective search space: 58112461710
effective search space used: 58112461710
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 73 (32.7 bits)
Lotus: description of TM0388a.6