BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0387.8
(449 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DPOL_BPPZA (P06950) DNA polymerase (EC 2.7.7.7) (Early protein GP2) 33 1.1
DPOL_BPPH2 (P03680) DNA polymerase (EC 2.7.7.7) (Early protein GP2) 33 1.1
DOME_DROME (Q9VWE0) Cytokine receptor precursor (Domeless protein) 33 1.1
SYFA_PYRAE (Q8ZX61) Phenylalanyl-tRNA synthetase alpha chain (EC... 32 2.6
CVRA_SHIFL (Q83RQ1) Cell volume regulation protein A 32 2.6
CVRA_ECOL6 (P59239) Cell volume regulation protein A 32 2.6
DHYS_DROME (Q9VSF4) Probable deoxyhypusine synthase (EC 2.5.1.46... 32 3.3
CVRA_SALTY (P65524) Cell volume regulation protein A 32 3.3
CVRA_SALTI (P65525) Cell volume regulation protein A 32 3.3
CVRA_ECOLI (P76007) Cell volume regulation protein A 32 4.4
CT81_HUMAN (Q9H1Q7) Protein C20orf81 31 5.7
HUTI_XANCP (Q8PAA6) Imidazolonepropionase (EC 3.5.2.7) (Imidazol... 31 7.4
FXL5_HUMAN (Q9UKA1) F-box/LRR-repeat protein 5 (F-box and leucin... 31 7.4
SYW_CLOAB (Q97LD6) Tryptophanyl-tRNA synthetase (EC 6.1.1.2) (Tr... 30 9.7
>DPOL_BPPZA (P06950) DNA polymerase (EC 2.7.7.7) (Early protein GP2)
Length = 572
Score = 33.5 bits (75), Expect = 1.1
Identities = 18/41 (43%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Query: 94 LFDGEWVWDESYPLY-QSKDCMF-LDEGFRCSENGRRDLFY 132
+F+G++VWDE YPL+ Q C F L EG+ + +R FY
Sbjct: 267 VFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFY 307
>DPOL_BPPH2 (P03680) DNA polymerase (EC 2.7.7.7) (Early protein GP2)
Length = 575
Score = 33.5 bits (75), Expect = 1.1
Identities = 18/41 (43%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Query: 94 LFDGEWVWDESYPLY-QSKDCMF-LDEGFRCSENGRRDLFY 132
+F+G++VWDE YPL+ Q C F L EG+ + +R FY
Sbjct: 270 VFEGKYVWDEDYPLHIQHIRCEFELKEGYIPTIQIKRSRFY 310
>DOME_DROME (Q9VWE0) Cytokine receptor precursor (Domeless protein)
Length = 1282
Score = 33.5 bits (75), Expect = 1.1
Identities = 39/149 (26%), Positives = 51/149 (34%), Gaps = 36/149 (24%)
Query: 155 RLRNKRVVFAGDSIGRNQWESLLCMLSSGVSNKESIYEVNGNPITKHKGFLVFKFRDFNC 214
R+ N + D+ Q CM V NK +Y V P+ RDFNC
Sbjct: 83 RILNNTTILFSDTNAVEQENDYHCMCDEYVINKSKVY-VGTRPLL---------VRDFNC 132
Query: 215 TVEYYRAPFLVLQ-SRPPTGVSGKIRTTLKVDKMDWNSLKWSNADILILNTGHWWNYEKT 273
Y F+V ++PP V K + NT + W Y T
Sbjct: 133 L--DYDFQFMVCNFTQPPNTVITKYN--------------------ISYNTNNDWRYSNT 170
Query: 274 IRGGCYFQEGTEVKLKLHVEDAYKRSMET 302
+ C F V L +D YKR ET
Sbjct: 171 L--DCNFDSAPVVTCNL-TDDNYKRFSET 196
>SYFA_PYRAE (Q8ZX61) Phenylalanyl-tRNA synthetase alpha chain (EC
6.1.1.20) (Phenylalanine--tRNA ligase alpha chain)
(PheRS)
Length = 489
Score = 32.3 bits (72), Expect = 2.6
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 9/54 (16%)
Query: 357 WSRFKAANAVLSSHTNASEIMKIKVLNITHMTAQRKDGHSSIYYLGRVAGPAPL 410
W R KA N VL + T A+ I + A+R DG ++ +GRV P L
Sbjct: 301 WDRKKALNPVLRTQTTATTIRAL---------AERGDGEYKVFTIGRVFRPEKL 345
>CVRA_SHIFL (Q83RQ1) Cell volume regulation protein A
Length = 578
Score = 32.3 bits (72), Expect = 2.6
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 7/55 (12%)
Query: 23 FRLFEPSLGVLGFVVVTAIVGC-------CFFYLGNRDVAARFGFLDQPQSFPWL 70
+ L S G+L F + TA+ G C F LGNR + R+G L WL
Sbjct: 223 YPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWL 277
>CVRA_ECOL6 (P59239) Cell volume regulation protein A
Length = 578
Score = 32.3 bits (72), Expect = 2.6
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 7/55 (12%)
Query: 23 FRLFEPSLGVLGFVVVTAIVGC-------CFFYLGNRDVAARFGFLDQPQSFPWL 70
+ L S G+L F + TA+ G C F LGNR + R+G L WL
Sbjct: 223 YPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWL 277
>DHYS_DROME (Q9VSF4) Probable deoxyhypusine synthase (EC 2.5.1.46)
(DHS)
Length = 368
Score = 32.0 bits (71), Expect = 3.3
Identities = 25/87 (28%), Positives = 38/87 (42%), Gaps = 8/87 (9%)
Query: 319 FFRTLAPVHFRGGDWRNGGNCHSETLPDLGSSLVPNDNWSRFK-----AANAVLSSHTNA 373
F + LAP F G +G + + +G+ LVPNDN+ +F+ + +L +
Sbjct: 134 FIKCLAPT-FMGSFELSGRDLRERGINRIGNLLVPNDNYCKFEDWVMPLLDEMLEEQKSQ 192
Query: 374 SEIMKIKVLNITHMTAQRKDGHSSIYY 400
I I H +R SSIYY
Sbjct: 193 GTIWSPS--KIIHRLGERIGDPSSIYY 217
>CVRA_SALTY (P65524) Cell volume regulation protein A
Length = 577
Score = 32.0 bits (71), Expect = 3.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 31 GVLGFVVVTAIVGC-------CFFYLGNRDVAARFGFLDQPQSFPWL 70
G+L F + TA+ G C F LGNR + R+G L WL
Sbjct: 231 GILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWL 277
>CVRA_SALTI (P65525) Cell volume regulation protein A
Length = 577
Score = 32.0 bits (71), Expect = 3.3
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 31 GVLGFVVVTAIVGC-------CFFYLGNRDVAARFGFLDQPQSFPWL 70
G+L F + TA+ G C F LGNR + R+G L WL
Sbjct: 231 GILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWL 277
>CVRA_ECOLI (P76007) Cell volume regulation protein A
Length = 578
Score = 31.6 bits (70), Expect = 4.4
Identities = 19/55 (34%), Positives = 25/55 (44%), Gaps = 7/55 (12%)
Query: 23 FRLFEPSLGVLGFVVVTAIVGC-------CFFYLGNRDVAARFGFLDQPQSFPWL 70
+ L S G+L F + TA+ G C F LGNR + R+G L WL
Sbjct: 223 YPLLALSGGILIFSLTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAWL 277
>CT81_HUMAN (Q9H1Q7) Protein C20orf81
Length = 454
Score = 31.2 bits (69), Expect = 5.7
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 138 QPKDCNMPRFNATKMLERLRNKRVVFAGDSIGRNQWESLLCML 180
+P +M F A+++ + L NK VV GDSI R ++ L+ +L
Sbjct: 12 RPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLL 54
>HUTI_XANCP (Q8PAA6) Imidazolonepropionase (EC 3.5.2.7)
(Imidazolone-5-propionate hydrolase)
Length = 428
Score = 30.8 bits (68), Expect = 7.4
Identities = 31/107 (28%), Positives = 41/107 (37%), Gaps = 19/107 (17%)
Query: 356 NWSRFKAANAVLSSHTNASEIMKIKVL--NITHMTAQRKDG-------------HSSIYY 400
+W+ A + V + T + M VL N MT DG +I Y
Sbjct: 7 HWTPSVADSIVYTYQTTQACAMHCDVLWHNARLMTLDAGDGGLGSVDDGVVACQDGTIVY 66
Query: 401 LGRVAGPAPL---HRQDCSH-WCLPGVPDTWNELLYAMLLKHEVDQR 443
G A PL H DC W PG+ D L+YA +E +QR
Sbjct: 67 AGPAADAPPLQASHVHDCQRRWISPGLIDCHTHLVYAGNRANEFEQR 113
>FXL5_HUMAN (Q9UKA1) F-box/LRR-repeat protein 5 (F-box and
leucine-rich repeat protein 5) (F-box protein FBL4/FBL5)
(p45SKP2-like protein)
Length = 691
Score = 30.8 bits (68), Expect = 7.4
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 298 RSMETVLNWMQSSVNPSKTQVFFRTLAPVHFRGGDWRNGGNCHSETLPD 346
R + + W Q + KT ++ L PVH+ GDW +G +T PD
Sbjct: 227 RCSQVSMKWSQLT----KTGSLWKHLYPVHWARGDWYSGPATELDTEPD 271
>SYW_CLOAB (Q97LD6) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)
(Tryptophan--tRNA ligase) (TrpRS)
Length = 335
Score = 30.4 bits (67), Expect = 9.7
Identities = 9/42 (21%), Positives = 24/42 (56%)
Query: 286 VKLKLHVEDAYKRSMETVLNWMQSSVNPSKTQVFFRTLAPVH 327
+ +K +D +R+++ + ++ S ++P K +F ++ P H
Sbjct: 49 ITVKQEAKDLRRRTLQLIATYIASGIDPEKNTIFIQSHVPAH 90
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.138 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,832,057
Number of Sequences: 164201
Number of extensions: 2507102
Number of successful extensions: 4596
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 4592
Number of HSP's gapped (non-prelim): 17
length of query: 449
length of database: 59,974,054
effective HSP length: 113
effective length of query: 336
effective length of database: 41,419,341
effective search space: 13916898576
effective search space used: 13916898576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0387.8