BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.9
(421 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 159 1e-38
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 159 1e-38
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 150 5e-36
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 150 8e-36
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 138 2e-32
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 137 7e-32
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 133 7e-31
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 133 7e-31
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 125 3e-28
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 115 2e-25
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 97 1e-19
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 91 6e-18
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 90 1e-17
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 90 1e-17
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 90 1e-17
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 89 2e-17
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 87 6e-17
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 86 2e-16
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 83 1e-15
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 82 2e-15
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 159 bits (403), Expect = 1e-38
Identities = 91/269 (33%), Positives = 141/269 (51%), Gaps = 5/269 (1%)
Query: 154 EKAIHQEVNKLLAADFIRE----IKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNS 209
E+ + ++ +L IR P W+ K+R+ +DY LN+ +
Sbjct: 220 EQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDR 279
Query: 210 YPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLK 269
+P+P++D+++ + ID G+HQI+M P KTAF T +Y Y MPFGLK
Sbjct: 280 HPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLK 339
Query: 270 NAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPE 329
NA AT+QR M+ + + ++ VY+DD+IV S H + L F +L K N++L +
Sbjct: 340 NAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLD 399
Query: 330 KCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHS 389
KC F Q FLG ++T GI+ N +K +AIQ+ P KE++ +G +F+P+
Sbjct: 400 KCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNF 459
Query: 390 GDKSAPFFKCLKKNAAFE-WNSECEEAFK 417
D + P KCLKKN + N E + AFK
Sbjct: 460 ADIAKPMTKCLKKNMKIDTTNPEYDSAFK 488
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 159 bits (402), Expect = 1e-38
Identities = 93/321 (28%), Positives = 163/321 (49%), Gaps = 3/321 (0%)
Query: 99 REDTQDRDM--LLGENLDLFAWSHKDMPGIDPNFICLALNPGIEPVTQTRRQMGDVKEKA 156
RE+ DR + ++ + D+FA S ++ + L G EP+ Q R + +
Sbjct: 898 RENGDDRKIWDVIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPE 957
Query: 157 IHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPLPSID 216
I + + K+L IRE K P W + VV+VKK +G RMC+DY +NK N++PLP+I+
Sbjct: 958 IRKMIQKMLNQKVIRESKSP-WSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIE 1016
Query: 217 KLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATYQ 276
+ +G +L ++ D +G+ QI + ++ TAF + + +PFGL + A +Q
Sbjct: 1017 ATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQ 1076
Query: 277 RLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQ 336
M+ + +G VYVDD+++ S H +D+ +A R+RK M+L KC +
Sbjct: 1077 GTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKK 1136
Query: 337 GGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPF 396
++LG +T G+E K +++ P +VKE+Q +G + +F+ + ++
Sbjct: 1137 EVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
Query: 397 FKCLKKNAAFEWNSECEEAFK 417
+ A+ W E E AF+
Sbjct: 1197 TSLISAKVAWIWEKEQEIAFQ 1217
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 150 bits (380), Expect = 5e-36
Identities = 89/283 (31%), Positives = 142/283 (49%), Gaps = 7/283 (2%)
Query: 140 EPVTQTRRQMGDVKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANG------KWR 193
EPV + + + I +V KL+ D I E + + +++V K + KWR
Sbjct: 313 EPVYTKNYRSPHSQVEEIQAQVQKLIK-DKIVEPSVSQYNSPLLLVPKKSSPNSDKKKWR 371
Query: 194 MCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFM 253
+ +DY +NK + +PLP ID ++D + S +D SG+HQI++ D T+F
Sbjct: 372 LVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFS 431
Query: 254 TARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLT 313
T+ +Y + +PFGLK A ++QR+M F G +Y+DD+IV ++LT
Sbjct: 432 TSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLT 491
Query: 314 KAFARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQ 373
+ F + R++N++L+PEKCSF + FLG T +GI + K IQ P +
Sbjct: 492 EVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSAR 551
Query: 374 HLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWNSECEEAF 416
+ RF+ + D S + KKN FEW EC++AF
Sbjct: 552 RFVAFCNYYRRFIKNFADYSRHITRLCKKNVPFEWTDECQKAF 594
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 150 bits (378), Expect = 8e-36
Identities = 87/282 (30%), Positives = 140/282 (48%), Gaps = 5/282 (1%)
Query: 141 PVTQTRRQMGDVKEKAIHQEVNKLLAADFIRE----IKYPTWMTNVVMVKKANGKWRMCV 196
P+ + + E + +V ++L IRE PTW+ K+R+ +
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 197 DYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTAR 256
DY LN+ + YP+P++D+++ + + ID G+HQI+M KTAF T
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325
Query: 257 VNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAF 316
+Y Y MPFGL+NA AT+QR M+ + + ++ VY+DD+I+ S + H + F
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385
Query: 317 ARLRKHNMRLNPEKCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLI 376
+L N++L +KC F + FLG ++T GI+ N K KAI P KE++ +
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFL 445
Query: 377 GRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWNS-ECEEAFK 417
G +F+P+ D + P CLKK + E EAF+
Sbjct: 446 GLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFE 487
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 138 bits (348), Expect = 2e-32
Identities = 82/236 (34%), Positives = 130/236 (54%), Gaps = 8/236 (3%)
Query: 157 IHQEVNKLLAADFIRE----IKYPTWMTNVVMVKKANGK--WRMCVDYTDLNKACPKNSY 210
+ +++++LL IR P W+ V K NG+ +RM VD+ LN ++Y
Sbjct: 139 VERQIDELLQDGIIRPSNSPYNSPIWI--VPKKPKPNGEKQYRMVVDFKRLNTVTIPDTY 196
Query: 211 PLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKN 270
P+P I+ + + + +D SG+HQI M SD KTAF T Y + +PFGLKN
Sbjct: 197 PIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKN 256
Query: 271 AGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEK 330
A A +QR++D + +G+ VY+DD+IV S +H ++L A L K N+++N EK
Sbjct: 257 APAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEK 316
Query: 331 CSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFL 386
F +FLG+++T GI+ + K +AI EM P SVKE++ +G + +F+
Sbjct: 317 SHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFI 372
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 137 bits (344), Expect = 7e-32
Identities = 78/266 (29%), Positives = 135/266 (50%), Gaps = 1/266 (0%)
Query: 153 KEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPL 212
K +A++ E+N+ L + IRE K V+ V K G RM VDY LNK N YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 213 PSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAG 272
P I++L+ G+ + + +D S YH I++ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAP 542
Query: 273 ATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCS 332
A +Q ++ + ++ Y+DD+++ S S H + + +L+ N+ +N KC
Sbjct: 543 AHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 333 FGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDK 392
F KF+G+ I+ +G + + + K P + KE++ +G + L +F+P +
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 393 SAPFFKCLKKNAAFEWNSECEEAFKS 418
+ P LKK+ ++W +A ++
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIEN 688
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 133 bits (335), Expect = 7e-31
Identities = 77/266 (28%), Positives = 135/266 (49%), Gaps = 1/266 (0%)
Query: 153 KEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPL 212
K +A++ E+N+ L + IRE K V+ V K G RM VDY LNK N YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 213 PSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAG 272
P I++L+ G+ + + +D S YH I++ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 273 ATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCS 332
A +Q ++ + ++ Y+D++++ S S H + + +L+ N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 333 FGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDK 392
F KF+G+ I+ +G + + + K P + KE++ +G + L +F+P +
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 393 SAPFFKCLKKNAAFEWNSECEEAFKS 418
+ P LKK+ ++W +A ++
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIEN 688
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 133 bits (335), Expect = 7e-31
Identities = 77/266 (28%), Positives = 135/266 (49%), Gaps = 1/266 (0%)
Query: 153 KEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKKANGKWRMCVDYTDLNKACPKNSYPL 212
K +A++ E+N+ L + IRE K V+ V K G RM VDY LNK N YPL
Sbjct: 424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPL 482
Query: 213 PSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAG 272
P I++L+ G+ + + +D S YH I++ DE K AF R + Y MP+G+ A
Sbjct: 483 PLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAP 542
Query: 273 ATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCS 332
A +Q ++ + ++ Y+D++++ S S H + + +L+ N+ +N KC
Sbjct: 543 AHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCE 602
Query: 333 FGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDK 392
F KF+G+ I+ +G + + + K P + KE++ +G + L +F+P +
Sbjct: 603 FHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQL 662
Query: 393 SAPFFKCLKKNAAFEWNSECEEAFKS 418
+ P LKK+ ++W +A ++
Sbjct: 663 THPLNNLLKKDVRWKWTPTQTQAIEN 688
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 125 bits (313), Expect = 3e-28
Identities = 78/250 (31%), Positives = 125/250 (49%), Gaps = 5/250 (2%)
Query: 157 IHQEVNKLLAADFIREIKYPTWMTNVVMVKKA-----NGKWRMCVDYTDLNKACPKNSYP 211
++ EV +LL IR + P V+ KK N R+ +D+ LN+ + YP
Sbjct: 197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYP 256
Query: 212 LPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNA 271
+PSI ++ + + +D SGYHQI + D +KT+F Y + +PFGL+NA
Sbjct: 257 MPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNA 316
Query: 272 GATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKC 331
+ +QR +D V Q+G+ VYVDD+I+ S S H + L NMR++ EK
Sbjct: 317 SSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKT 376
Query: 332 SFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPHSGD 391
F + ++LGF+++ G + + +K KAIQE P V +V+ +G + F+
Sbjct: 377 RFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAA 436
Query: 392 KSAPFFKCLK 401
+ P LK
Sbjct: 437 IARPITDILK 446
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 115 bits (288), Expect = 2e-25
Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 7/249 (2%)
Query: 141 PVTQTRRQMGDVKEKAIHQEVNKLLAADFIREIKYPTWMTNVVMVKK-ANGKWRMCVDY- 198
PV + R + +A+ E+N+L I I Y W +V++KK GK R+C D+
Sbjct: 440 PVFKRARPVPYGSLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFK 499
Query: 199 -TDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARV 257
+ LN A +PLP+ + + G + S ID Y Q+++ + T R
Sbjct: 500 CSGLNAALKDEFHPLPTSEDIFSRLKGT-VYSQIDLKDAYLQVELDEEAQKLAVINTHRG 558
Query: 258 NYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDLTKAFA 317
+ Y M FGLK A A++Q++MD++ G G + VY DD+I+ + H + L + F
Sbjct: 559 IFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEKILRELFE 616
Query: 318 RLRKHNMRLNPEKCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSVKEVQHLIG 377
R +++ R++ EKC+F + FLGF + G + K +AI+ MK+P K++ +G
Sbjct: 617 RFKEYGFRVSAEKCAFAQKQVTFLGF-VDEHGRRPDSKKTEAIRSMKAPTDQKQLASFLG 675
Query: 378 RIAALSRFL 386
LSR +
Sbjct: 676 AADWLSRMM 684
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 96.7 bits (239), Expect = 1e-19
Identities = 66/218 (30%), Positives = 107/218 (48%), Gaps = 11/218 (5%)
Query: 135 LNPGIEPVTQTRRQMGDVKEKAIHQEVNKLLAADFIR--EIKYPTWMTNV--------VM 184
+NP I+ + + + + E+A+ +++N LL IR E K+ + V +
Sbjct: 1396 INPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPIT 1455
Query: 185 VKKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHP 244
K+ GK RM +Y LN+ + Y LP I+ ++ +++ S D SG+ Q+ M
Sbjct: 1456 GKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEE 1515
Query: 245 SDEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVL 304
TAF+ Y + MPFGLKNA A +QR MD VF+G + + VY+DD++V S
Sbjct: 1516 ESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSET 1574
Query: 305 GSSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLG 342
H + L +++ + L+P K G FLG
Sbjct: 1575 AEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLG 1612
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 90.9 bits (224), Expect = 6e-18
Identities = 45/120 (37%), Positives = 70/120 (57%)
Query: 193 RMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAF 252
RMC+DY L K KN YP+P +D L D + + +D SGY Q+++ DE KT
Sbjct: 7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTC 66
Query: 253 MTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHHEDL 312
+T ++ ++ MPFGL NA AT+ LM+ V + + VY+DD++V ++ +S HE +
Sbjct: 67 VTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHI 126
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 89.7 bits (221), Expect = 1e-17
Identities = 73/263 (27%), Positives = 120/263 (44%), Gaps = 17/263 (6%)
Query: 159 QEVNKLLAADFIREIKYPTWMTNVVM---VKKANGKWRMCVDYTDLNKACPKNSYPLPSI 215
+++ +LL I+ K P ++ +K GK RM V+Y +NKA ++Y LP+
Sbjct: 264 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNK 323
Query: 216 DKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATY 275
D+L+ G ++ S D SG+ Q+ + TAF + +Y + +PFGLK A + +
Sbjct: 324 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 383
Query: 276 QRLMDRVFEGQVGRNM-EVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFG 334
QR MD F +V R VYVDD++V S H + + +H + L+ +K
Sbjct: 384 QRHMDEAF--RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 441
Query: 335 IQGGKFLGFMI------TTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPH 388
+ FLG I I +++K E K K++Q +G + S ++P
Sbjct: 442 KKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDK-----KQLQRFLGILTYASDYIPK 496
Query: 389 SGDKSAPFFKCLKKNAAFEWNSE 411
P LK+N + W E
Sbjct: 497 LAQIRKPLQAKLKENVPWRWTKE 519
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 89.7 bits (221), Expect = 1e-17
Identities = 73/263 (27%), Positives = 121/263 (45%), Gaps = 17/263 (6%)
Query: 159 QEVNKLLAADFIREIKYPTWMTNVVM---VKKANGKWRMCVDYTDLNKACPKNSYPLPSI 215
+++ +LL I+ K P ++ +K GK RM V+Y +NKA ++Y LP+
Sbjct: 264 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNK 323
Query: 216 DKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATY 275
D+L+ G ++ S D SG+ Q+ + TAF + +Y + +PFGLK A + +
Sbjct: 324 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 383
Query: 276 QRLMDRVFEGQVGRNM-EVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFG 334
QR MD F +V R VYVDD++V S H + + +H + L+ +K
Sbjct: 384 QRHMDEAF--RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 441
Query: 335 IQGGKFLGFMI------TTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPH 388
+ FLG I I +++K E K K++Q +G + S ++P
Sbjct: 442 KKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDK-----KQLQRFLGILTYASDYIPK 496
Query: 389 SGDKSAPFFKCLKKNAAFEWNSE 411
P LK+N ++W E
Sbjct: 497 LAQIRKPLQAKLKENVPWKWTKE 519
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 89.7 bits (221), Expect = 1e-17
Identities = 73/263 (27%), Positives = 121/263 (45%), Gaps = 17/263 (6%)
Query: 159 QEVNKLLAADFIREIKYPTWMTNVVM---VKKANGKWRMCVDYTDLNKACPKNSYPLPSI 215
+++ +LL I+ K P ++ +K GK RM V+Y +NKA ++Y LP+
Sbjct: 264 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNK 323
Query: 216 DKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATY 275
D+L+ G ++ S D SG+ Q+ + TAF + +Y + +PFGLK A + +
Sbjct: 324 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 383
Query: 276 QRLMDRVFEGQVGRNM-EVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFG 334
QR MD F +V R VYVDD++V S H + + +H + L+ +K
Sbjct: 384 QRHMDEAF--RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 441
Query: 335 IQGGKFLGFMI------TTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPH 388
+ FLG I I +++K E K K++Q +G + S ++P
Sbjct: 442 KKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDK-----KQLQRFLGILTYASDYIPK 496
Query: 389 SGDKSAPFFKCLKKNAAFEWNSE 411
P LK+N ++W E
Sbjct: 497 LAQIRKPLQAKLKENVPWKWTKE 519
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 89.0 bits (219), Expect = 2e-17
Identities = 72/263 (27%), Positives = 121/263 (45%), Gaps = 17/263 (6%)
Query: 159 QEVNKLLAADFIREIKYPTWMTNVVMVKKAN---GKWRMCVDYTDLNKACPKNSYPLPSI 215
+++ +LL I+ K P ++ +A G RM V+Y +NKA ++Y LP+
Sbjct: 265 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNK 324
Query: 216 DKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATY 275
D+L+ G ++ S D SG+ Q+ + TAF + +Y + +PFGLK A + +
Sbjct: 325 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 384
Query: 276 QRLMDRVFEGQVGRNM-EVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFG 334
QR MD F +V R VYVDD++V S H + + +H + L+ +K
Sbjct: 385 QRHMDEAF--RVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 442
Query: 335 IQGGKFLGFMI------TTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPH 388
+ FLG I I +++K E K K++Q +G + S ++P+
Sbjct: 443 KKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDK-----KQLQRFLGILTYASDYIPN 497
Query: 389 SGDKSAPFFKCLKKNAAFEWNSE 411
P LK+N ++W E
Sbjct: 498 LAQMRQPLQAKLKENVPWKWTKE 520
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 87.4 bits (215), Expect = 6e-17
Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 17/263 (6%)
Query: 159 QEVNKLLAADFIREIKYPTWMTNVVM---VKKANGKWRMCVDYTDLNKACPKNSYPLPSI 215
+++ +LL I+ K P ++ +K GK RM V+Y +NKA ++Y P+
Sbjct: 259 KQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNK 318
Query: 216 DKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGATY 275
D+L+ G ++ S D SG+ Q+ + TAF + +Y + +PFGLK A + +
Sbjct: 319 DELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIF 378
Query: 276 QRLMDRVFEGQVGRNM-EVYVDDMIVKSVLGSSHHEDLTKAFARLRKHNMRLNPEKCSFG 334
QR MD F +V R VYVDD++V S H + + +H + L+ +K
Sbjct: 379 QRHMDEAF--RVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 436
Query: 335 IQGGKFLGFMI------TTRGIEINLDKCKAIQEMKSPGSVKEVQHLIGRIAALSRFLPH 388
+ FLG I I +++K E K K++Q +G + S ++P
Sbjct: 437 KKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDK-----KQLQRFLGILTYASDYIPK 491
Query: 389 SGDKSAPFFKCLKKNAAFEWNSE 411
P LK+N ++W E
Sbjct: 492 LAQIRKPLQAKLKENVPWKWTKE 514
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 85.5 bits (210), Expect = 2e-16
Identities = 68/239 (28%), Positives = 122/239 (50%), Gaps = 16/239 (6%)
Query: 151 DVKEKAIHQEVNKLLAADFIREIKYPT-----WMTNVVMVKKANGKWRMCVDYTDLNKAC 205
DV+E +E LL IRE + P ++ N +K+ GK RM ++Y +N+A
Sbjct: 215 DVQE--FKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKR--GKRRMVINYKKMNEAT 270
Query: 206 PKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAF-MTARVNYCYQTM 264
+SY LP D +++ G+ S +DA SGY+Q+++H + + TAF + +Y + +
Sbjct: 271 IGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVL 330
Query: 265 PFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLGSSHH-EDLTKAFARLRKHN 323
FGLK A + YQR MD+ +G + Y+DD+++ + H D+ R+++
Sbjct: 331 SFGLKQAPSIYQRFMDQSLKG-LEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKG 389
Query: 324 MRLNPEKCSFGIQGGKFLGFMITTRGIEINLDKCKAIQEMKSPGSV---KEVQHLIGRI 379
+ ++ +K Q ++LG I G EI+L + ++ P + K++Q +G I
Sbjct: 390 IIISKKKSKLIQQEIEYLGLKIQGNG-EIDLSPHTQEKILQFPDELEDRKQIQRFLGCI 447
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 83.2 bits (204), Expect = 1e-15
Identities = 63/242 (26%), Positives = 112/242 (46%), Gaps = 13/242 (5%)
Query: 186 KKANGKWRMCVDYTDLNKACPKNSYPLPSIDKLVDGASGNELMSLIDAYSGYHQIKMHPS 245
++ GK RM V+Y +N+A +S+ LP++ +L+ G + S D SG+ Q+ +
Sbjct: 287 ERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEE 346
Query: 246 DEDKTAFMTARVNYCYQTMPFGLKNAGATYQRLMDRVFEGQVGRNMEVYVDDMIVKSVLG 305
+ TAF + ++ ++ +PFGLK A + +QR M G + VYVDD+IV S
Sbjct: 347 SQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSE 405
Query: 306 SSHHEDLTKAFARLRKHNMRLNPEKCSFGIQGGKFLGFMI------TTRGIEINLDKCKA 359
H+ + + K+ + L+ +K + + FLG I I N+ K
Sbjct: 406 LDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEIDKGTHCPQNHILENIHKFPD 465
Query: 360 IQEMKSPGSVKEVQHLIGRIAALSRFLPHSGDKSAPFFKCLKKNAAFEWNSECEEAFKSR 419
E K K +Q +G + ++P + P LKK+ + W ++ + + +
Sbjct: 466 RLEDK-----KHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNW-TQSDSDYVKK 519
Query: 420 IK 421
IK
Sbjct: 520 IK 521
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 82.4 bits (202), Expect = 2e-15
Identities = 68/272 (25%), Positives = 127/272 (46%), Gaps = 14/272 (5%)
Query: 159 QEVNKLLAADFIREIKYPTWMTNVVMVK----KANGKWRMCVDYTDLNKACPKNSYPLPS 214
+++ +LL I+ K T M+ +V+ + GK RM V+Y +NKA +++ LP+
Sbjct: 246 RQIKELLELKVIKPSK-STHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPN 304
Query: 215 IDKLVDGASGNELMSLIDAYSGYHQIKMHPSDEDKTAFMTARVNYCYQTMPFGLKNAGAT 274
D+L+ G ++ S D SG Q+ + + TAF + +Y + +PFGLK A +
Sbjct: 305 KDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSI 364
Query: 275 YQRLMDRVFEGQVGRNMEVYVDDMIVKSVLG-SSHHEDLTKAFARLRKHNMRLNPEKCSF 333
+ + Q + VYVDD++V S G H+ + R K + L+ +K
Sbjct: 365 FPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQL 424
Query: 334 GIQGGKFLGFMITTRGIEINLDKCKAIQEM-KSPGSV---KEVQHLIGRIAALSRFLPHS 389
+ FLG I + + ++ + K P + K++Q +G + S ++P
Sbjct: 425 FKEKINFLGLEIDQ---GTHCPQNHILEHIHKFPDRIEDKKQLQRFLGILTYASDYIPKL 481
Query: 390 GDKSAPFFKCLKKNAAFEWNSECEEAFKSRIK 421
P LK+++ + WN + + + ++IK
Sbjct: 482 ASIRKPLQSKLKEDSTWTWN-DTDSQYMAKIK 512
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.138 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,466,381
Number of Sequences: 164201
Number of extensions: 2272036
Number of successful extensions: 4137
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 4033
Number of HSP's gapped (non-prelim): 132
length of query: 421
length of database: 59,974,054
effective HSP length: 113
effective length of query: 308
effective length of database: 41,419,341
effective search space: 12757157028
effective search space used: 12757157028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Lotus: description of TM0383.9