BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0383.4
(221 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RL1_THEMA (P29393) 50S ribosomal protein L1 38 0.016
YP23_CAEEL (Q09202) Hypothetical protein AH6.3 in chromosome II 38 0.021
PROQ_ECO57 (Q8XCM4) ProP effector 37 0.028
PROQ_SHIFL (Q83RJ2) ProP effector 37 0.036
TRDN_RABIT (Q28820) Triadin 37 0.048
PROQ_ECOL6 (Q8FGT3) ProP effector 37 0.048
PRR9_ARATH (Q8L500) Two-component response regulator-like APRR9 ... 35 0.11
PROQ_ECOLI (P45577) ProP effector 35 0.11
MYSN_ACACA (P05659) Myosin II heavy chain, non muscle 35 0.11
MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [... 35 0.11
KMLS_BOVIN (Q28824) Myosin light chain kinase, smooth muscle (EC... 35 0.14
H1B_CHITE (P40276) Histone H1B 35 0.14
DPOA_DROME (P26019) DNA polymerase alpha catalytic subunit (EC 2... 35 0.14
NO56_HUMAN (O00567) Nucleolar protein Nop56 (Nucleolar protein 5A) 35 0.18
PTNL_RAT (Q62728) Protein tyrosine phosphatase, non-receptor typ... 34 0.24
IF2_PSESM (Q87WQ5) Translation initiation factor IF-2 34 0.24
H13_GLYBA (P40265) Histone H1-III 34 0.24
FLT1_DROME (O61491) Flotillin-1 34 0.24
H1O_CHITH (Q07134) Histone H1, orphon 34 0.31
BRC1_HUMAN (P38398) Breast cancer type 1 susceptibility protein 34 0.31
>RL1_THEMA (P29393) 50S ribosomal protein L1
Length = 233
Score = 38.1 bits (87), Expect = 0.016
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 67 KEQMEAEED---AERLLRRTEKRAFAAFKRAASLVDSSPASVPL-----PLRVEPKPKSG 118
KE +EA D AE L+ + EK F F A + D L P + P PKSG
Sbjct: 85 KEALEAGADYVGAEDLVEKIEKEGFLDFDVAIATPDMMRIIGRLGKILGPRGLMPSPKSG 144
Query: 119 IRQQDLLKKVVEIKPKRPRSESKQSTSASSDVSVTNRKPDHGRLKETGQSLSGVKKVEEQ 178
Q++ + V E K+ R E + + + + V R D+ +LKE ++ +K++ +
Sbjct: 145 TVTQEVAEAVKEF--KKGRIEVRTDKTGNIHIPVGKRSFDNEKLKE--NIIAAIKQIMQM 200
Query: 179 SLSG 182
+G
Sbjct: 201 KPAG 204
>YP23_CAEEL (Q09202) Hypothetical protein AH6.3 in chromosome II
Length = 230
Score = 37.7 bits (86), Expect = 0.021
Identities = 35/118 (29%), Positives = 52/118 (43%), Gaps = 13/118 (11%)
Query: 92 KRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLLKKVVE---IKPKRPRS----ESKQST 144
K AS SP + P +P P+S + Q+ E + PK P+S E+K+
Sbjct: 29 KPTASTESVSPLNEP-----KPPPQSAVPQKPAAPAAEEKAPVDPKDPKSKDVDEAKKPD 83
Query: 145 SASSDVSVTNRKPDHGRLKETGQSLSGVKKVEEQSLS-GSTKVEDLSSGSHDADAKPK 201
A+S S ++KP+ G K S KK EE+ +S + D + DAK K
Sbjct: 84 PANSKKSNKSKKPEKGSKKSKKSEKSKKKKTEEKVMSEDKPERPDKLTEEEKPDAKEK 141
>PROQ_ECO57 (Q8XCM4) ProP effector
Length = 232
Score = 37.4 bits (85), Expect = 0.028
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 56 GALDSDDLLYLKEQME---AEEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVE 112
G LD + + ++Q+E A A+R ++ +KR AA AA + +P P
Sbjct: 89 GELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAA---AAGEKEDAPRRERKPRPTT 145
Query: 113 PKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVS 151
P+ K G ++ +K VE PK ++ ++ + SD+S
Sbjct: 146 PRRKEGAERKPRAQKPVEKAPKTAKAPREEQHTPVSDIS 184
>PROQ_SHIFL (Q83RJ2) ProP effector
Length = 232
Score = 37.0 bits (84), Expect = 0.036
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 56 GALDSDDLLYLKEQME---AEEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVE 112
G LD + + ++Q+E A A+R ++ +KR AA AA + +P P
Sbjct: 89 GELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAA---AAGEKEDAPRRERKPRPTT 145
Query: 113 PKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVS 151
P+ K G ++ +K VE PK ++ ++ + SD+S
Sbjct: 146 PRRKEGAERKPRAQKPVEKAPKTVKAPREEQHTPVSDIS 184
>TRDN_RABIT (Q28820) Triadin
Length = 705
Score = 36.6 bits (83), Expect = 0.048
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 103 ASVPLPLRVEPKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVSVTNRKPDHGRL 162
AS P P P+ K G +++ K E K K + ++K+ + +D+ + ++P G+
Sbjct: 298 ASRPTPALPTPEEKEGEKKKAEKKVTTETKKKAEKEDAKKKSEKETDIDMKKKEP--GKS 355
Query: 163 KETGQSLSGVKKVEEQSLSGSTKVEDLSSGSHDADAKPK 201
+T VK + + K ED A+ +PK
Sbjct: 356 PDTKPGT--VKVTTQAATKKDEKKEDSKKAKKPAEEQPK 392
Score = 32.0 bits (71), Expect = 1.2
Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 17/198 (8%)
Query: 15 PKDKKWGKGKDKIDDEDVTFQRMVAKMQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEE 74
PK KK K + + T + A ++ A + A + + K++ + +
Sbjct: 391 PKGKKQEKKEKHEEPAKSTKKEHAAPSEKQAKAKIERKEEVSAASTKKAVPAKKEEKTTK 450
Query: 75 DAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVE----------PKPKSGIRQQDL 124
E+ R+ + ++ + L VP L+ + KP+ I++++
Sbjct: 451 TVEQETRKEKPGKISSVLKDKELTKEKEVKVPASLKEKGSETKKDEKTSKPEPQIKKEE- 509
Query: 125 LKKVVEIKPKRPRSESKQSTSASSDVSVTNRKPDHGRLKETGQSLSGVKKVEEQSLSGST 184
K E+KPK P+ + K+ D+ + HG+ +E +K+V+ +
Sbjct: 510 -KPGKEVKPKPPQPQIKKEEKPEQDIMKPEKTALHGKPEE-----KVLKQVKAVTTEKHV 563
Query: 185 KVEDLSSGSHDADAKPKI 202
K + H P I
Sbjct: 564 KPKPAKKAEHQEKEPPSI 581
>PROQ_ECOL6 (Q8FGT3) ProP effector
Length = 232
Score = 36.6 bits (83), Expect = 0.048
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 56 GALDSDDLLYLKEQME---AEEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVE 112
G LD + + ++Q+E A A+R ++ +KR AA AA + +P P
Sbjct: 89 GELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAA---AAGEKEDAPRRERKPRPTT 145
Query: 113 PKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVS 151
P+ K G ++ +K VE PK ++ ++ + SD+S
Sbjct: 146 PRRKEGAERKPRSQKPVEKAPKTVKAPREEQHTPVSDIS 184
>PRR9_ARATH (Q8L500) Two-component response regulator-like APRR9
(Pseudo-response regulator 9)
Length = 468
Score = 35.4 bits (80), Expect = 0.11
Identities = 33/141 (23%), Positives = 61/141 (42%), Gaps = 15/141 (10%)
Query: 73 EEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLLKKVVEIK 132
+E + L ++ AF+ F+ + S + A V L +PK+ + L+KV +
Sbjct: 274 DESKHQKLSLSDASAFSRFEESKS---AEKAVVALEESTSGEPKTPTESHEKLRKVTSDQ 330
Query: 133 PKRPRSESKQSTSASS--------DVSVTNRKPDHGRLKETGQSLSGVKKVEEQSLSGST 184
S ++++ +SS +VTN+K D E+ + + K+VE +GS
Sbjct: 331 GSATTSSNQENIGSSSVSFRNQVLQSTVTNQKQDSPIPVESNREKAASKEVE----AGSQ 386
Query: 185 KVEDLSSGSHDADAKPKINNS 205
+ +G + KPK S
Sbjct: 387 STNEGIAGQSSSTEKPKEEES 407
>PROQ_ECOLI (P45577) ProP effector
Length = 232
Score = 35.4 bits (80), Expect = 0.11
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 56 GALDSDDLLYLKEQME---AEEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVE 112
G LD + + ++Q+E A A+R ++ +KR AA A + +P P
Sbjct: 89 GELDEQHVEHARKQLEEAKARVQAQRAEQQAKKREAAA---TAGEKEDAPRRERKPRPTT 145
Query: 113 PKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVS 151
P+ K G ++ +K VE PK ++ ++ + SD+S
Sbjct: 146 PRRKEGAERKPRAQKPVEKAPKTVKAPREEQHTPVSDIS 184
>MYSN_ACACA (P05659) Myosin II heavy chain, non muscle
Length = 1509
Score = 35.4 bits (80), Expect = 0.11
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 24 KDKIDDEDVTFQRMVAKMQEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRT 83
K +++++ Q+ VA ++E E S+D+L K ++EAE+ +
Sbjct: 914 KADLEEDNALLQKKVAGLEEELQEETSA--------SNDILEQKRKLEAEKGELKASLEE 965
Query: 84 EKRAFAAFKRAASLVDSSPASVPLPLRVEPKPKSGI--RQQDLLKKVVEIKPKRPRSESK 141
E+R A + A + V+S + E + +++DL +++ E K +E+
Sbjct: 966 EERNRKALQEAKTKVESERNELQDKYEDEAAAHDSLKKKEEDLSRELRETKDALADAENI 1025
Query: 142 QSTSASSDVSVTNRKPDHGR-----LKETGQSLSGVKK-VEEQSLSGSTKVEDLSSGSHD 195
T S + T R D R + T L KK +EE+ ++E+ SG
Sbjct: 1026 SET-LRSKLKNTERGADDVRNELDDVTATKLQLEKTKKSLEEELAQTRAQLEEEKSGKEA 1084
Query: 196 ADAKPK 201
A +K K
Sbjct: 1085 ASSKAK 1090
>MAPB_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B)
[Contains: MAP1 light chain LC1]
Length = 2468
Score = 35.4 bits (80), Expect = 0.11
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 108 PLRVEPKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVSVTNRKPDHGRLKETGQ 167
P++ E KPK ++++ K++ + + K P+ E K+ T ++ KE +
Sbjct: 668 PIKKEEKPKKEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKE 727
Query: 168 SLSGVKKVEEQSLSGSTKVEDLSSGSHDADAKPKI 202
+KK+ + + ST LS A KPK+
Sbjct: 728 PKKEIKKLPKDAKKSST---PLSEAKKPAALKPKV 759
>KMLS_BOVIN (Q28824) Myosin light chain kinase, smooth muscle (EC
2.7.1.117) (MLCK) [Contains: Telokin]
Length = 1176
Score = 35.0 bits (79), Expect = 0.14
Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 102 PASVPLPL-----RVEPKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVSVTNRK 156
PA P PL PKP S + + LK V KP A + V N K
Sbjct: 229 PAETPKPLGNVKPAETPKPVSNAKPAETLKPVGNAKPAETPKPLSNVKPAETPKLVGNAK 288
Query: 157 PDHGRLKETGQSLSGVKKVEEQSLSGSTKVEDLSSGSHDADAKPKINNSGGGLLGLAYAS 216
P ET + L K E G+ K ++ + + K +I N G A A+
Sbjct: 289 P-----AETSKPLDNAKPAEAPKPLGNAKPAEIPKPTGKEELKKEIKNDVNCKKGHAGAT 343
Query: 217 SDD 219
+
Sbjct: 344 DSE 346
Score = 34.7 bits (78), Expect = 0.18
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 97 LVDSSPASVPLPL-----RVEPKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVS 151
L + PA P PL PKP ++ + K + +KP A +
Sbjct: 188 LGSTKPAETPKPLGSTKPAETPKPLGNVKPAETPKPLGNVKPAETPKPLGNVKPAETPKP 247
Query: 152 VTNRKP-------DHGRLKETGQSLSGVKKVEEQSLSGSTKVEDLS---SGSHDADAKPK 201
V+N KP + + ET + LS VK E L G+ K + S + A+A
Sbjct: 248 VSNAKPAETLKPVGNAKPAETPKPLSNVKPAETPKLVGNAKPAETSKPLDNAKPAEAPKP 307
Query: 202 INNS 205
+ N+
Sbjct: 308 LGNA 311
>H1B_CHITE (P40276) Histone H1B
Length = 232
Score = 35.0 bits (79), Expect = 0.14
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 37 MVAKMQEVAGERGG--------YLHGRGALDSDDLL-YLKEQMEAEEDAERLLRRTEKRA 87
MV + ERGG +L + +D D L ++K+ +++ + +LL+ K A
Sbjct: 46 MVVNAVKTLKERGGSSLQAIKKFLVAQYKVDVDKLAPFIKKYLKSAVEKGQLLQTKGKGA 105
Query: 88 FAAFKRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLL--KKVVEIKPKRPRSESKQSTS 145
+FK A+ P E KPK + KKV + K+P++ + +T
Sbjct: 106 SGSFKLPAAAKKEKVVKKPTKAAAEKKPKKAAAKPKKAGEKKVKKTIAKKPKAAA--ATK 163
Query: 146 ASSDVSVTNRKP 157
V+ T +KP
Sbjct: 164 IKKPVAKTTKKP 175
>DPOA_DROME (P26019) DNA polymerase alpha catalytic subunit (EC
2.7.7.7)
Length = 1488
Score = 35.0 bits (79), Expect = 0.14
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 22 KGKDKIDDE-DVTFQRMVAKM-QEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERL 79
K +D++DD DV +R AK QE G+ ++ G ++DL E + D E
Sbjct: 38 KVEDQVDDVYDVVDEREYAKRAQEKYGD--DWIEEDGTGYAEDLRDFFEDEDEYSDGEED 95
Query: 80 LRRTEKRAFAA-------------FKRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLLK 126
+ ++K+ A AS+ + +VP + V K+ ++ D+L
Sbjct: 96 RKDSKKKKGVAPNSKKRPRENEKPVTGKASIKNLFSNAVPKKMDV----KTSVKDDDILA 151
Query: 127 KVV-EIKPK-RPRSESKQSTSASSDVSVTNRKPDHGRLKETGQSLSGVKKVEEQ 178
++ EIK + SE + A + +SVT+RK D KE S KV+EQ
Sbjct: 152 DILGEIKEEPAATSEKAEKVIAPAKISVTSRKFDAAAAKEYMNSFLNNIKVQEQ 205
>NO56_HUMAN (O00567) Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 596
Score = 34.7 bits (78), Expect = 0.18
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 29/187 (15%)
Query: 40 KMQEVAGERGGYLHGRGALDSDDLLYLKEQM---EAEEDAERLLRRTEK----------R 86
K++E ER + + G + +L +KE M EAEE A + R+ EK +
Sbjct: 396 KLREQVEERLSF-YETGEIPRKNLDVMKEAMVQAEAEEAAAEITRKLEKQEKKRLKKEKK 454
Query: 87 AFAAFKRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLLKK-------VVEIKPKRPRSE 139
AA A+S SS + +PK K + Q++ ++ + KPK+ +S
Sbjct: 455 RLAALALASSENSSSTPEECEEMSEKPKKKKKQKPQEVPQENGMEDPSISFSKPKKKKSF 514
Query: 140 SKQSTSASSDVSVTNRKPDHGRLKETGQSLSGVKKVEEQS-LSGS------TKVEDLSSG 192
SK+ SSD+ T + K++ V EE SGS +K E +SSG
Sbjct: 515 SKEEL-MSSDLEETAGSTSIPKRKKSTPKEETVNDPEEAGHRSGSKKKRKFSKEEPVSSG 573
Query: 193 SHDADAK 199
+A K
Sbjct: 574 PEEAVGK 580
>PTNL_RAT (Q62728) Protein tyrosine phosphatase, non-receptor type
21 (EC 3.1.3.48) (Protein-tyrosine phosphatase 2E)
Length = 1175
Score = 34.3 bits (77), Expect = 0.24
Identities = 38/141 (26%), Positives = 65/141 (45%), Gaps = 13/141 (9%)
Query: 49 GGYLHGRGALDSDDLLYLKEQME-AEEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPL 107
GGY H + D+ L++ E+ E E+D+ R +E R AAF + L + P+
Sbjct: 693 GGYSHKKSLSDATMLIHSSEEDEDLEDDSSREHAVSEPRLTAAFSQEQQLNYPCASVTPV 752
Query: 108 --PLRVEPKPKSGI-----RQQDLLKKVVEIKPKRPRSESKQSTSAS-SDVSVTNR---K 156
PL + +PKS + R +D+ + ++ +PR + S S SD++ + R +
Sbjct: 753 TGPLHIF-EPKSHVTEPEKRAKDISPVHLVMETHQPRRHGLLTPSMSESDLTTSGRYRAR 811
Query: 157 PDHGRLKETGQSLSGVKKVEE 177
D + + LSG K E
Sbjct: 812 RDSLKKRPVSDLLSGKKNTVE 832
>IF2_PSESM (Q87WQ5) Translation initiation factor IF-2
Length = 841
Score = 34.3 bits (77), Expect = 0.24
Identities = 25/111 (22%), Positives = 49/111 (43%), Gaps = 9/111 (8%)
Query: 42 QEVAGERGGYLHGRGALDSDDLLYLKEQMEAEEDAERLLRRTEKRAFAAFKRAASLVDSS 101
+E+ ER + R A+++ + +AEE+A+R + AA + A++
Sbjct: 98 EEIEAERKREMDERRAVEN------AARQKAEEEAKRRAEEDARNQPAAGQPASAPAQPV 151
Query: 102 PASVPL---PLRVEPKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSD 149
A+ P+ P P P S D K+ + +P +PR++ + + D
Sbjct: 152 AAAEPVREAPAAAAPAPASAAPSADARKRDEQRRPDKPRADDRNARGGDGD 202
>H13_GLYBA (P40265) Histone H1-III
Length = 228
Score = 34.3 bits (77), Expect = 0.24
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 14/152 (9%)
Query: 15 PKDKKWGKGKDKIDDEDVTFQRMVAKMQEVAGERGG--------YLHGRGALDSDDLL-Y 65
PK K K K V+ MV + ERGG +L + +D D L +
Sbjct: 26 PKTDKPKKAKAPRTHPPVS--EMVVNAIKTLKERGGSSLQAIKKFLAAQYKVDVDKLAPF 83
Query: 66 LKEQMEAEEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLL 125
+K+ + LL+ K A +FK A+ A P E KP++ + + L
Sbjct: 84 IKKYLRGAVTKGELLQTKGKGASGSFKLPAAAKKEKVAKTPKKAAGEKKPQAAAKPKKAL 143
Query: 126 KKVVEIKPKRPRSESKQSTSASSDVSVTNRKP 157
+K I K+P++ + +T V+ + +KP
Sbjct: 144 EKKKSI-AKKPKAAT--ATKVKKPVAKSTKKP 172
>FLT1_DROME (O61491) Flotillin-1
Length = 426
Score = 34.3 bits (77), Expect = 0.24
Identities = 28/108 (25%), Positives = 49/108 (44%), Gaps = 8/108 (7%)
Query: 70 MEAEEDAERLLRRTEKRAFAAFKRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLLKKVV 129
MEAE +AE + R E AFA +A + + + ++ + R+ +++ ++
Sbjct: 310 MEAEAEAESIRIRGEAEAFAIAAKAKAEAEQ--------MAMKAEAYREYREAAMVEMLL 361
Query: 130 EIKPKRPRSESKQSTSASSDVSVTNRKPDHGRLKETGQSLSGVKKVEE 177
+ PK + + A V++ D G K TG+ LS V KV E
Sbjct: 362 DTLPKVAAEVAAPLSQAKKITMVSSGTGDIGAAKLTGEVLSIVNKVPE 409
>H1O_CHITH (Q07134) Histone H1, orphon
Length = 244
Score = 33.9 bits (76), Expect = 0.31
Identities = 35/135 (25%), Positives = 60/135 (43%), Gaps = 15/135 (11%)
Query: 24 KDKIDDEDVTFQRMVAKMQEVAGERGG--------YLHGRGALDSDDLL-YLKEQMEAEE 74
K K+ MV ERGG ++ + +D + L+ ++K+ +++
Sbjct: 47 KPKVAPTHPPVSEMVVNAVTTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIKKFLKSSV 106
Query: 75 DAERLLRRTEKRAFAAFKR--AASLVDSSPASVPLPLRVEPKPKSGIRQQDLLKKVVEIK 132
LL+ K A +FK AA V+ P VP PKPK+ ++ +K V K
Sbjct: 107 AKGTLLQAKGKGASGSFKLPPAAKKVEKKPKKVPST----PKPKTTKPKRVTGEKKVVKK 162
Query: 133 PKRPRSESKQSTSAS 147
P + E+K++T A+
Sbjct: 163 PAAKKPEAKKATKAA 177
>BRC1_HUMAN (P38398) Breast cancer type 1 susceptibility protein
Length = 1863
Score = 33.9 bits (76), Expect = 0.31
Identities = 29/128 (22%), Positives = 50/128 (38%), Gaps = 7/128 (5%)
Query: 83 TEKRAFAAFKRAASLVDSSPASVPLPLRVEPKPKSGIRQQDLLKKVVEIKPKRPRSESKQ 142
TE AF ++ P + L + + +P SG+ +D +KK K P ++
Sbjct: 478 TENLIIGAFVTEPQIIQERPLTNKL--KRKRRPTSGLHPEDFIKKADLAVQKTPEMINQG 535
Query: 143 STSASSDVSVTNRKPDHGRLKETGQSLSGVKKVE-----EQSLSGSTKVEDLSSGSHDAD 197
+ + V N K G S+ K E+ + TK E +SS + +
Sbjct: 536 TNQTEQNGQVMNITNSGHENKTKGDSIQNEKNPNPIESLEKESAFKTKAEPISSSISNME 595
Query: 198 AKPKINNS 205
+ I+NS
Sbjct: 596 LELNIHNS 603
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.307 0.127 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,969,454
Number of Sequences: 164201
Number of extensions: 1082236
Number of successful extensions: 2666
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 2618
Number of HSP's gapped (non-prelim): 160
length of query: 221
length of database: 59,974,054
effective HSP length: 106
effective length of query: 115
effective length of database: 42,568,748
effective search space: 4895406020
effective search space used: 4895406020
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 63 (28.9 bits)
Lotus: description of TM0383.4