BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0377b.7
(281 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CJ22_HUMAN (Q96SZ5) Protein C10orf22 115 2e-25
CJ22_MOUSE (Q6PDY2) Protein C10orf22 homolog 114 3e-25
NARG_BACSU (P42175) Nitrate reductase alpha chain (EC 1.7.99.4) 32 1.7
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 31 3.0
GLP1_IPONI (P45853) Germin-like protein precursor 31 3.0
CCAB_RABIT (Q05152) Voltage-dependent N-type calcium channel alp... 31 3.0
SPRI_DROME (Q8MQW8) Protein Sprint (SH2 poly-proline containing ... 31 3.9
RRPO_PVMR (P17965) RNA replication protein (147 kDa protein) (OR... 30 5.0
CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6 ... 30 5.0
RECO_MOUSE (P34057) Recoverin (Cancer associated retinopathy pro... 30 6.6
PTFD_BACSU (P26382) PTS system, fructose-specific IID component ... 30 6.6
DPOL_NPVLD (P30318) DNA polymerase (EC 2.7.7.7) 30 6.6
PRLR_COLLI (Q90374) Prolactin receptor precursor (PRL-R) 30 8.6
GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 pre... 30 8.6
>CJ22_HUMAN (Q96SZ5) Protein C10orf22
Length = 228
Score = 115 bits (287), Expect = 2e-25
Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 31/234 (13%)
Query: 63 PQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQ----RIPKITYLHIYECEKFSMGIFC 118
P+++ +L+++L +R ED+ + P R ++ Q +P +TY+HIYE + FS+G+F
Sbjct: 6 PENLSKLKSLLTQLRAEDLNIAP-----RKATLQPLPPNLPPVTYMHIYETDGFSLGVFL 60
Query: 119 LPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWV--------VDLPPES--PTIVKPTEN 168
L IPLH+HPGM K+L+GT+ I D + LPPE ++P E
Sbjct: 61 LKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPRER 120
Query: 169 QALEMRLAKVKVDADFTAPCNPSILYPEDGGNMHCFTAVTA-CAVLDVLGPPYSDYEGRH 227
+A +R ++ A++T P IL P N+H AV A LD+L PPY +GR
Sbjct: 121 EA--VRPGVLRSRAEYTEASGPCILTPH-RDNLHQIDAVEGPAAFLDILAPPYDPDDGRD 177
Query: 228 CTYY---NNYPFSDISVEGISIPEEERNGYEWLQEKEQLEDLEVDGKMYSGPKI 278
C YY + S +P E WL E Q +D +G+ Y GPK+
Sbjct: 178 CHYYRVLEPVRPKEASSSACDLPRE-----VWLLETPQADDFWCEGEPYPGPKV 226
>CJ22_MOUSE (Q6PDY2) Protein C10orf22 homolog
Length = 251
Score = 114 bits (285), Expect = 3e-25
Identities = 81/254 (31%), Positives = 122/254 (47%), Gaps = 25/254 (9%)
Query: 41 VQKLFDTCKEVFASGGTGFIPP----PQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQ 96
+Q++ F TG P P+++ L+++L +R ED+ + P +
Sbjct: 5 IQRIARQACLTFRGSSTGSEGPAPGFPENLSLLKSLLTQVRAEDLNIAPRKA-LPQPLPR 63
Query: 97 RIPKITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVD-- 154
+P +TY+HIYE E FS+G+F L IPLH+HPGM K+L+GT+ I D +
Sbjct: 64 NLPPVTYMHIYETEGFSLGVFLLKSGTCIPLHDHPGMHGMLKVLYGTVRISCMDKLDTGA 123
Query: 155 ----LPPES--PTIVKPTENQALEMRLAKVKVDADFTAPCNPSILYPEDGGNMHCFTAVT 208
PPE ++P E +A +R ++ A++T P +L P N+H AV
Sbjct: 124 GHRRPPPEQQFEPPLQPLEREA--VRPGVLRSRAEYTEASGPCVLTPH-RDNLHQIDAVD 180
Query: 209 A-CAVLDVLGPPYSDYEGRHCTYYNNY-PF--SDISVEGISIPEEERNGYEWLQEKEQLE 264
A LD+L PPY +GR C YY P + S +P E WL E Q +
Sbjct: 181 GPAAFLDILAPPYDPEDGRDCHYYRVVEPIRPKEASGSACDLPRE-----VWLLETPQAD 235
Query: 265 DLEVDGKMYSGPKI 278
D +G+ Y GPK+
Sbjct: 236 DFWCEGEPYPGPKV 249
>NARG_BACSU (P42175) Nitrate reductase alpha chain (EC 1.7.99.4)
Length = 1228
Score = 32.0 bits (71), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 121 PSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDLPPESPTI 162
P + + +H + F L+ G M + YDW DLPP SP I
Sbjct: 195 PIPAMSMISHASGSRFMSLIGGPM-LSFYDWYADLPPASPQI 235
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 31.2 bits (69), Expect = 3.0
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 31 NRRRQKKMPPVQKLFDTCKEVFASGG 56
N + K+PPV+ +FD K+VFA+GG
Sbjct: 111 NDKIATKIPPVRHMFDYWKDVFATGG 136
>GLP1_IPONI (P45853) Germin-like protein precursor
Length = 214
Score = 31.2 bits (69), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 119 LPPSGVIPLHNHPGMTVFSKLLFGTM 144
L P GVIP+H HPG + ++ GT+
Sbjct: 97 LAPGGVIPMHTHPGASEILNVVEGTI 122
>CCAB_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B
subunit (Voltage-gated calcium channel alpha subunit
Cav2.2) (Calcium channel, L type, alpha-1 polypeptide
isoform 5) (Brain calcium channel III) (BIII)
Length = 2339
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/53 (35%), Positives = 23/53 (42%), Gaps = 2/53 (3%)
Query: 4 ERTLADRKGRSFCELPRETITSSGSKRNRRRQKKMPPVQKLFDTCKEVFASGG 56
ER R G C PRE +S R R + K PP Q+ + KE GG
Sbjct: 961 ERRARHRTGPRAC--PREAESSEEPARRHRARHKAPPTQETAEKDKEAAEKGG 1011
>SPRI_DROME (Q8MQW8) Protein Sprint (SH2 poly-proline containing
Ras-interactor protein)
Length = 1790
Score = 30.8 bits (68), Expect = 3.9
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 12/95 (12%)
Query: 10 RKGRSFCELPRETITSSGSK-------RNRRRQKKMPPVQKLFDTCKEVFASGGTGFIPP 62
++G F P + + +G R + R + + Q+ + K F G G +
Sbjct: 1064 KQGSPFYAEPADALRQAGLTSAATAILRRQHRSQMLHASQRHSEPLKAGFGGSGNGAMLQ 1123
Query: 63 PQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQR 97
P D+++L LD ++P KP + + S Q+
Sbjct: 1124 PSDLEKLAGSLDELKP-----KPKVSQQQQQSQQQ 1153
>RRPO_PVMR (P17965) RNA replication protein (147 kDa protein) (ORF
1) [Contains: RNA-directed RNA polymerase (EC 2.7.7.48);
Probable helicase]
Length = 1968
Score = 30.4 bits (67), Expect = 5.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 201 MHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNY 234
++CF T + + Y ++E +HC Y+N Y
Sbjct: 13 VNCFEPATQAVIANSAATLYKNFEEQHCQYFNYY 46
>CHD6_HUMAN (Q8TD26) Chromodomain-helicase-DNA-binding protein 6
(CHD-6)
Length = 2713
Score = 30.4 bits (67), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 164 KPTENQALEMRLAKVKVDADFTAPCNPSILYPEDGGNMH 202
K T+NQ L L DAD+ A CNP ++ +DG H
Sbjct: 1185 KKTKNQLLIPELK----DADWLATCNPEVVLHDDGYKKH 1219
>RECO_MOUSE (P34057) Recoverin (Cancer associated retinopathy
protein) (CAR protein) (23 kDa photoreceptor
cell-specific protein)
Length = 201
Score = 30.0 bits (66), Expect = 6.6
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 40 PVQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVLDAIRPEDVGLKPDMPHFRSSSAQRI 98
P QKL + ++ G G I + ++ + A+ I+PEDV L PD + A++I
Sbjct: 97 PTQKL-EWAFSLYDVDGNGTISKNEVLEIVMAIFKMIKPEDVKLLPDDENTPEKRAEKI 154
>PTFD_BACSU (P26382) PTS system, fructose-specific IID component
(EIID-Fru) (Fructose-permease IID component)
(Phosphotransferase enzyme II, D component) (p30)
Length = 275
Score = 30.0 bits (66), Expect = 6.6
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 202 HCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEERNGYEWLQEKE 261
+C+ + A L G ++ RH ++N +P+ + G++ EE E
Sbjct: 36 YCYVMIPAIKKLYGPGAKRNEALQRHLEWFNTHPWLTAPIFGVTAAMEE----------E 85
Query: 262 QLEDLEVDGKMYSGPKI 278
+ +DGK SG KI
Sbjct: 86 MANNKGIDGKAISGMKI 102
>DPOL_NPVLD (P30318) DNA polymerase (EC 2.7.7.7)
Length = 1013
Score = 30.0 bits (66), Expect = 6.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 24 TSSGSKRNRRRQKKMPPVQKLFDTCKEVFASGGTGFIPPPQDIQRLQAVL 73
TS+ +KR + PV + C+E+ A+ G F+P D R+Q VL
Sbjct: 825 TSTTAKRRKEEDPARKPVITIAKHCRELLANPGVDFLPGNGD--RIQYVL 872
>PRLR_COLLI (Q90374) Prolactin receptor precursor (PRL-R)
Length = 830
Score = 29.6 bits (65), Expect = 8.6
Identities = 21/79 (26%), Positives = 34/79 (42%), Gaps = 6/79 (7%)
Query: 156 PPESPTIVKPTENQALEMRLAKVKVDADFTAPCNPSILYPEDGGNMHCFTAVTACAVLDV 215
PPE PTI+K + E K +D P N ++LY ++G V C
Sbjct: 231 PPEKPTIIK-CRSPEKETFTCWWKPGSDGGHPTNYTLLYSKEGEE-----RVYECPDYKT 284
Query: 216 LGPPYSDYEGRHCTYYNNY 234
GP ++ +H +++ Y
Sbjct: 285 AGPNSCYFDKKHTSFWTIY 303
>GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1
precursor (AtGER1) (At-GERM1) (AtGLP1)
Length = 208
Score = 29.6 bits (65), Expect = 8.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 119 LPPSGVIPLHNHPGMTVFSKLLFGTM 144
L P GVIP+H HPG + +L G++
Sbjct: 91 LAPKGVIPMHTHPGASEVLFVLTGSI 116
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.138 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,106,451
Number of Sequences: 164201
Number of extensions: 1722855
Number of successful extensions: 3687
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3674
Number of HSP's gapped (non-prelim): 15
length of query: 281
length of database: 59,974,054
effective HSP length: 109
effective length of query: 172
effective length of database: 42,076,145
effective search space: 7237096940
effective search space used: 7237096940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Lotus: description of TM0377b.7