BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0370.9
(642 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CYL1_HUMAN (P35663) Cylicin I (Multiple-band polypeptide I) (Fra... 57 2e-07
RGP1_MOUSE (P46061) Ran GTPase-activating protein 1 45 8e-04
TP2A_MOUSE (Q01320) DNA topoisomerase II, alpha isozyme (EC 5.99... 44 0.001
NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130... 44 0.001
GARP_PLAFF (P13816) Glutamic acid-rich protein precursor 43 0.002
PIT_DROME (Q9VD51) Probable ATP-dependent helicase pitchoune 43 0.003
TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei... 42 0.004
NP14_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 k... 42 0.006
GAR2_SCHPO (P41891) Protein gar2 42 0.006
YKK5_YEAST (P34250) Hypothetical 125.6 kDa protein in AAT1-GFA1 ... 41 0.008
SR40_YEAST (P32583) Suppressor protein SRP40 41 0.008
RLA0_HALMA (P15825) 50S ribosomal protein L10E (Ribosomal protei... 41 0.008
P2CG_MOUSE (Q61074) Protein phosphatase 2C gamma isoform (EC 3.1... 41 0.008
IF2_CHLCV (Q823F2) Translation initiation factor IF-2 41 0.008
A4_CAVPO (Q60495) Amyloid beta A4 protein precursor (APP) (ABPP)... 41 0.008
VHS3_YEAST (Q08438) Protein VHS3 (Viable in a HAL3 SIT4 backgrou... 41 0.011
S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding ... 41 0.011
TUR8_MOUSE (P19473) Tumor rejection antigen P815A 40 0.014
NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof... 40 0.014
MAPA_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Co... 40 0.014
>CYL1_HUMAN (P35663) Cylicin I (Multiple-band polypeptide I)
(Fragment)
Length = 598
Score = 56.6 bits (135), Expect = 2e-07
Identities = 79/386 (20%), Positives = 147/386 (37%), Gaps = 28/386 (7%)
Query: 1 MSQESGKQSAPGLVPVKNAHGVRFLGLKSPSSHSTRVTRSSSGIAAQSSSPGH--SPTPK 58
+ +++ +Q+ P+K++H SS + +++S ++ S S K
Sbjct: 95 VEEKTKRQNEADKTPLKSSHENEQSKKSKSSSETNPESQNSKTVSKNCSQKDKKDSKNSK 154
Query: 59 KMRTKQVVTK---KKTLRFSPPQDTSPISESDTENVADIPDLDIVHAED----------- 104
K T+ + TK KK L+ S + PISE +EN ++ L +V D
Sbjct: 155 KTNTEFLHTKNNPKKDLKRSKTSN-DPISEICSENSLNVDFLMLVGQSDDESINFDAWLR 213
Query: 105 --------LLDLASARVSEPPVQSNVEKSTSF-SEDSVDVHDDAPPMKKSVIKTGSAK-A 154
L + ++ + N +KS+ SEDS D D+ +KK+V K K
Sbjct: 214 NYSQNNSKNYSLKYTKYTKKDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDV 273
Query: 155 PPETSSRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKMKHATPVKSTIRTPKDSKAAG 214
+T S + D DT D K+ + + KK +T +S + +
Sbjct: 274 KKDTESTDAESGDSKDERKDTKKDKKKLKKDDKKKDTKKYPESTDTESGDAKDARNDSRN 333
Query: 215 SVRKSKGETTSK-GKGLNVSNKKRKHVSDHESDQDGEPTMPDISTTTRKRVKGKRVPMNV 273
+ SK + K K + S + ES +D + D T +K VK +
Sbjct: 334 LKKASKNDDKKKDAKKITFSTDSESELESKESQKDEKKDKKDSKTDNKKSVKNDEESTDA 393
Query: 274 ADVPLDNVSFHYADNAQRWKFVSHRRIAIERELSEEALEFKEIIDLLSKAELMKTVKGIG 333
P + D + K + + + E+ E + ++L + K KG
Sbjct: 394 DSEPKGDSKKGKKDEKKGKKDSKKDDKKKDAKKNAESTEMESDLELKKDKKHSKEKKGSK 453
Query: 334 RCYEKLVREFIVNISSDYDDAGSAEF 359
+ +K R+ + +++D++ F
Sbjct: 454 KDIKKDARKDTESTDAEFDESSKTGF 479
>RGP1_MOUSE (P46061) Ran GTPase-activating protein 1
Length = 589
Score = 44.7 bits (104), Expect = 8e-04
Identities = 21/46 (45%), Positives = 31/46 (66%)
Query: 583 LIKMLAAPADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGE 628
+ K+LA+ +DDE D ++E+ E D +EE+D+E DDD EEE E
Sbjct: 350 MAKVLASLSDDEGEDEDEEEEGEEDDEEEEDEEDEEDDDEEEEEQE 395
>TP2A_MOUSE (Q01320) DNA topoisomerase II, alpha isozyme (EC 5.99.1.3)
Length = 1528
Score = 44.3 bits (103), Expect = 0.001
Identities = 59/284 (20%), Positives = 118/284 (40%), Gaps = 43/284 (15%)
Query: 27 LKSPSSHSTRVTRSSSGIAAQSSSPGHSP------TPKKMRTKQVVTKKKTLRFSPPQD- 79
+K+ + R S + + G P KK + + K+ TL F P +
Sbjct: 1225 MKAEAEKKIRKKIKSENVEGTPAEDGAEPGSLRQRIEKKQKKEPGAKKQTTLPFKPVKKG 1284
Query: 80 --TSPISESDTENVADIPDLDIVHAEDLLDLASARVSEPPVQSNVEKSTSFSE-DSVDVH 136
+P S+S+++ ++ ++D+ + +R ++ +++ FS D D
Sbjct: 1285 RKKNPWSDSESDVSSNESNVDVPPRQKE---QRSRAAKAKFTVDLDSDEDFSGLDEKDED 1341
Query: 137 DDAPPMKKSVIKTGSAKAPPETSSR----KGKEHVILDSDGDTSDDV---------DVTV 183
+D P+ + K AK PP+ + + +G ++D + D D V D
Sbjct: 1342 EDFLPLDATPPK---AKIPPKNTKKALKTQGSSMSVVDLESDVKDSVPASPGVPAADFPA 1398
Query: 184 KNIESRLRKKM----KHATPVKSTIRT--------PKDSKAAGSVRKSKGETTSKGKGLN 231
+ +S+ KK K AT +S++ T PK +K+ ++ E + K N
Sbjct: 1399 ETEQSKPSKKTVGVKKTATKSQSSVSTAGTKKRAAPKGTKSDSALSARVSEKPAPAKAKN 1458
Query: 232 VSNKKRKHVSDHESDQDGEPTMPDISTTTRKRVKGKRVPMNVAD 275
++KRK S SD D E + +T+ + + + + P+++ D
Sbjct: 1459 --SRKRKPSSSDSSDSDFERAISKGATSKKAKGEEQDFPVDLED 1500
>NP14_HUMAN (Q14978) Nucleolar phosphoprotein p130 (Nucleolar 130
kDa protein) (140 kDa nucleolar phosphoprotein)
(Nopp140) (Nucleolar and coiled-body phosphoprotein 1)
Length = 699
Score = 43.9 bits (102), Expect = 0.001
Identities = 66/282 (23%), Positives = 102/282 (35%), Gaps = 40/282 (14%)
Query: 29 SPSSHSTRVTRSSSGIAAQSSSPGH-----SPTPKK-MRTKQVVTKKKTLRFSPPQDTSP 82
+P + + SSS ++ SSS + TPKK + KQVV K + P S
Sbjct: 206 APKIANGKAASSSSSSSSSSSSDDSEEEKAAATPKKTVPKKQVVAKAPVKAATTPTRKSS 265
Query: 83 ISESDTENVADIPDLDIVHAEDLLDLASARVSEPPVQS--------NVEKS--TSFSEDS 132
SE + + + + + A + PP +S VEK SEDS
Sbjct: 266 SSEDSSSDEEEEQKKPMKNKPGPYSYAPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDS 325
Query: 133 VDVHD-----DAPPMKKSVIKTGSAKAPPETSSRKGKEHVILDSDGDTSDDVDVTVKNIE 187
D D + P K+V+ + K PP ++K E SD D+S+D + K
Sbjct: 326 SDESDSSSEEEKKPPTKAVVSKATTKPPP---AKKAAESSSDSSDSDSSEDDEAPSKPAG 382
Query: 188 SRLRKKMKHATPVKS----TIRTPKDSKAAGS---VRKSKGETTSKGKGLNVSNKKRKHV 240
+ K A KS PK G RK+ ++ + + K +K V
Sbjct: 383 TTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSEEEKTKKMV 442
Query: 241 SDHESDQDGEPTMPDISTTTRKRVKGKRVPMNVADVPLDNVS 282
+ T P + + K+ P D D+ S
Sbjct: 443 A---------TTKPKATAKAALSLPAKQAPQGSRDSSSDSDS 475
Score = 41.6 bits (96), Expect = 0.006
Identities = 68/283 (24%), Positives = 103/283 (36%), Gaps = 71/283 (25%)
Query: 28 KSPSSHSTRVTRSSSGIAAQSSS--------------------PGHSPTPKK----MRTK 63
K+P +T TR SS SS P +P PKK K
Sbjct: 251 KAPVKAATTPTRKSSSSEDSSSDEEEEQKKPMKNKPGPYSYAPPPSAPPPKKSLGTQPPK 310
Query: 64 QVVTKKKTLRFSPPQDTSPISESDTENVADIPDLDIVHAEDLLDLASARVSEPPVQSNVE 123
+ V K++ + S +D+S S+S +E P +V S ++PP
Sbjct: 311 KAVEKQQPVESS--EDSSDESDSSSEEEKKPPTKAVV---------SKATTKPPPAKKAA 359
Query: 124 KSTSFSEDSVDVHDDAPPMK----------KSVIKTGSAKAPPETSSRK--GKEHVILDS 171
+S+S S DS DD P K K + T S P + ++ G +L
Sbjct: 360 ESSSDSSDSDSSEDDEAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTR 419
Query: 172 DGDTSDDVDVTVKNIESRLRKKMKHATPVKSTIRTPKDSKAAGSVRKSKGETTSKGKGLN 231
D+S + + + E + KKM T K+T +KAA S+ + S+
Sbjct: 420 KADSSSSEEESSSSEEEK-TKKMVATTKPKAT------AKAALSLPAKQAPQGSR----- 467
Query: 232 VSNKKRKHVSDHESDQDGEPTMPDISTTTRKRVKGKRVPMNVA 274
D SD D + + T++ VK K P VA
Sbjct: 468 ----------DSSSDSDSSSSEEEEEKTSKSAVKKK--PQKVA 498
Score = 41.2 bits (95), Expect = 0.008
Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 42/217 (19%)
Query: 101 HAEDLLD-----LASARVSEPPVQSN--------VEKSTSFSEDSVDVHDDA--PPMKKS 145
+A LLD L SA+V E +Q+N + S+S SEDS + ++ PP KK+
Sbjct: 46 NASSLLDIYSFWLKSAKVPERKLQANGPVAKKAKKKASSSDSEDSSEEEEEVQGPPAKKA 105
Query: 146 VIKTGSAKAPPETSSRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKMKHA-TPVKSTI 204
+ PP ++ K E + D D+ D + ++ ++ + K A P K
Sbjct: 106 AVPAKRVGLPPGKAAAKASESSSSEESRDDDDEEDQKKQPVQKGVKPQAKAAKAPPKKAK 165
Query: 205 RTPKDSKAAGSVRKSKGE------------------------TTSKGKGLNVSNKKRKHV 240
+ DS ++ K + + GK + S+
Sbjct: 166 SSDSDSDSSSEDEPPKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKAASSSSSSSSSS 225
Query: 241 SDHESDQDGEPTMPDISTTTRKRVKGKRVPMNVADVP 277
S +S+++ P T +K+V K P+ A P
Sbjct: 226 SSDDSEEEKAAATPK-KTVPKKQVVAK-APVKAATTP 260
Score = 34.3 bits (77), Expect = 1.0
Identities = 49/249 (19%), Positives = 93/249 (36%), Gaps = 12/249 (4%)
Query: 28 KSPSSHSTRVTRSSSGIAAQSSSPGHSPTPKKMRT----KQVVTKKKTLRFSPPQDTSPI 83
++PS + SS+ A + SP P + ++++T+K S + +S
Sbjct: 375 EAPSKPAGTTKNSSNKPAVTTKSPAVKPAAAPKQPVGGGQKLLTRKADSSSSEEESSSSE 434
Query: 84 SESDTENVADIPDLDIVHAEDLLDLASARVSEPPVQSNVEKSTSFSEDSVDVHDDAPPMK 143
E + VA A+ L L + + + S+ + +S SE+ + + K
Sbjct: 435 EEKTKKMVATTKPK--ATAKAALSLPAKQAPQGSRDSSSDSDSSSSEEEEEKTSKSAVKK 492
Query: 144 KSVIKTGSAKAPPETSSRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKMKHATPVKST 203
K G A S++KGK S D S + + + R + A +
Sbjct: 493 KPQKVAGGAAPSKPASAKKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSAL 552
Query: 204 IRTPKDSKAAGSVRKSKGETTSKGKGLNVSNKKRKHVSDHESDQDGEPTMPDIS----TT 259
T ++ KAA + + + E ++ S +K + + + P I T
Sbjct: 553 --TAQNGKAAKNSEEEEEEKKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNT 610
Query: 260 TRKRVKGKR 268
KR KG++
Sbjct: 611 FPKRKKGEK 619
>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor
Length = 678
Score = 43.1 bits (100), Expect = 0.002
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
+DE D++DAE D DEEDDDE DDD E+E E + + E SE
Sbjct: 617 EDEDDAEEDEDDAEEDDDEEDDDE--EDDDEDEDEDEEDEEEEEEEEEESE 665
Score = 40.4 bits (93), Expect = 0.014
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 558 ELKEISKTLQATIQASKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDDDEAL 617
E++E SK +Q + + + ++ + ++E + ++E+ E D DEED+D+A
Sbjct: 557 EVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAE 616
Query: 618 SDDDNVEEEGEYPTDADSTSESTSE 642
D+D+ EE+ + + D + E
Sbjct: 617 EDEDDAEEDEDDAEEDDDEEDDDEE 641
Score = 38.5 bits (88), Expect = 0.055
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 3/53 (5%)
Query: 592 DDEVSDPADDEDAEADLD--EEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
++E D D++DAE D D EED+D+A DDD E++ E D D + E
Sbjct: 603 EEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDE-EDDDEEDDDEDEDEDEEDE 654
Score = 37.4 bits (85), Expect = 0.12
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DD D D E+ E D +E+DD+E ++D+ E+E E D + E E
Sbjct: 613 DDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEEE 663
Score = 37.0 bits (84), Expect = 0.16
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
D+E D A++++ +A+ DE+D +E ++D+ EE+ + D D E E
Sbjct: 608 DEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEE 658
Score = 36.6 bits (83), Expect = 0.21
Identities = 22/84 (26%), Positives = 42/84 (49%), Gaps = 1/84 (1%)
Query: 560 KEISKTLQATIQASKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDDDEALSD 619
KE SK +Q + + + V++ + ++E + ++E+ E + +EE++DE D
Sbjct: 552 KEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEED 611
Query: 620 DDNVEE-EGEYPTDADSTSESTSE 642
+D+ EE E + D D E E
Sbjct: 612 EDDAEEDEDDAEEDEDDAEEDDDE 635
Score = 35.4 bits (80), Expect = 0.46
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
D++ D D E+ E D +E++DD DD+ ++E + D D E E
Sbjct: 606 DEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEE 656
Score = 35.4 bits (80), Expect = 0.46
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 591 ADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDAD 634
A+++ D +D+D E D +E+DD++ D+++ EEE E +++
Sbjct: 622 AEEDEDDAEEDDDEEDDDEEDDDEDEDEDEEDEEEEEEEEEESE 665
Score = 35.0 bits (79), Expect = 0.61
Identities = 16/52 (30%), Positives = 30/52 (56%), Gaps = 1/52 (1%)
Query: 592 DDEVSDPADDEDAEADLD-EEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
++E + +DED E + D EED+D+A D+D+ EE+ + D + + +
Sbjct: 597 EEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDED 648
Score = 35.0 bits (79), Expect = 0.61
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
++E + +DE+ E D +E++DD +DD E++ E D + E E
Sbjct: 599 EEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDDEEDDDEEDDDEDEDE 649
Score = 34.7 bits (78), Expect = 0.79
Identities = 20/87 (22%), Positives = 42/87 (47%), Gaps = 1/87 (1%)
Query: 556 LAELKEISKTLQATIQASKVRKHNVDQLIKMLAAPADDEVSDPADDEDAEADLDEEDDDE 615
+A+++E Q + + +K ++ + +DE D+E+ E + +EE+++E
Sbjct: 531 MAKIEEAELQKQKHVDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEE 590
Query: 616 ALSDDDNVEEEGEYPTDADSTSESTSE 642
+++ EEE E D D E +E
Sbjct: 591 E-EEEEEEEEEEEEEEDEDEEDEDDAE 616
Score = 33.9 bits (76), Expect = 1.4
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEE 626
DDE D +D+D + D DEED++E +++ E++
Sbjct: 633 DDEEDDDEEDDDEDEDEDEEDEEEEEEEEEESEKK 667
>PIT_DROME (Q9VD51) Probable ATP-dependent helicase pitchoune
Length = 680
Score = 42.7 bits (99), Expect = 0.003
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 533 NAPKDAPSASGTKGVTSTGKDDILAELKEISKTLQATIQASKVRKHNVDQLIKMLAAPAD 592
N P P K V DD+ + +E L Q + K Q+ + D
Sbjct: 42 NKPSKKPEKLSKKHVAKDEDDDLEEDFQEAP--LPKKKQQKQPPKKQQIQVANSDSESDD 99
Query: 593 DEVSDPADDE---DAEADLDEEDDDEALSDDDNVEEEGE 628
DE D AD++ D A++DEED D DDD E+E E
Sbjct: 100 DEQEDEADEDSDLDEVAEVDEEDVDSGSEDDDQQEDEDE 138
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC
6.3.2.-)
Length = 4065
Score = 42.4 bits (98), Expect = 0.004
Identities = 29/94 (30%), Positives = 47/94 (49%), Gaps = 3/94 (3%)
Query: 541 ASGTKGVTSTGKDDILAELKEISKTLQATIQASKVRKHNVDQLIKMLAAPADDEVSDPAD 600
ASGT G T +D+ L++ +S+ L + + N + ML DDE SD +
Sbjct: 2355 ASGTAG-TDQAEDEFLSDGSSVSEDLTDDREETPDLYRN--STLGMLEPGRDDEFSDEDE 2411
Query: 601 DEDAEADLDEEDDDEALSDDDNVEEEGEYPTDAD 634
D+D + DE+ DDE DD ++ + P+D +
Sbjct: 2412 DDDEDMYDDEQYDDELDYGDDMSQDNEDNPSDEE 2445
Score = 36.6 bits (83), Expect = 0.21
Identities = 18/41 (43%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTD 632
D+E +D DD D + ++D EDD++ LSD+D EE G D
Sbjct: 2473 DEEDNDDMDDMDEDDEMD-EDDEQELSDEDEDEEVGSEDMD 2512
>NP14_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa
protein) (140 kDa nucleolar phosphoprotein) (Nopp140)
(Nucleolar and coiled-body phosphoprotein 1)
Length = 704
Score = 41.6 bits (96), Expect = 0.006
Identities = 66/279 (23%), Positives = 98/279 (34%), Gaps = 37/279 (13%)
Query: 7 KQSAPGLVPVKNAHGVRFLGLKSPSSHSTRVTRSSSGIAAQSSSPGHSPTPKKMRTKQVV 66
K P K A+G K+ SS S+ + SSS ++ +P K KQVV
Sbjct: 208 KPGPPAKAQPKAANG------KAGSSSSS--SSSSSSDDSEEEKKAAAPLKKTAPKKQVV 259
Query: 67 TKKKT-LRFSPPQDTSPISESDTENVADI---------PDLDIVHAEDLLDLASARVSEP 116
K + +P Q +S +S +E + P + L S P
Sbjct: 260 AKAPVKVTAAPTQKSSSSEDSSSEEEEEQKKPMKKKAGPYSSVPPPSVSLSKKSVGAQSP 319
Query: 117 PVQSNVEKSTSFSEDSVDVHDDAPPM-KKSVIKTGSAKAPPETSSRKGKEHVILDSDGDT 175
+ + S DS + D + KK+ KT +K P + + K K DS
Sbjct: 320 KKAAAQTQPADSSADSSEESDSSSEEEKKTPAKTVVSKTPAKPAPVKKKAESSSDSSDSD 379
Query: 176 SDDVDVTVKNIESRLRKKMKHAT----PVKSTIRTPKDSKAAGSVRKSKGETTSKGKGLN 231
S + + K + + K A P + TPK + AGS +K +
Sbjct: 380 SSEDEAPAKPVSATKSPLSKPAVTPKPPAAKAVATPK--QPAGSGQKPQ----------- 426
Query: 232 VSNKKRKHVSDHESDQDGEPTMPDISTTTRKRVKGKRVP 270
S K S+ ES E TT + RV K P
Sbjct: 427 -SRKADSSSSEEESSSSEEEATKKSVTTPKARVTAKAAP 464
Score = 36.6 bits (83), Expect = 0.21
Identities = 60/292 (20%), Positives = 101/292 (34%), Gaps = 36/292 (12%)
Query: 2 SQESGKQSAPGLVPVKNAHGVRFLGLKSPSSHSTRVTRSSSGIAAQSSSPGHSPTPKKMR 61
S++S ++ VP + A + S S + +SS KK
Sbjct: 88 SEDSSEEEDKAQVPTQKAAAPAKRASLPQHAGKAAAKASESSSSEESSEEEEEKDKKKKP 147
Query: 62 TKQVVTKKKTLRFSPPQDTSPISESDTENVA--DIPDLDIVHAEDLLDLASARVSE---- 115
+Q K + PP + SES++++ + + P A A +
Sbjct: 148 VQQKAVKPQAKAVRPPPKKAESSESESDSSSEDEAPQTQKPKAAATAAKAPTKAQTKAPA 207
Query: 116 ---PPVQ------------SNVEKSTSFSEDSVDVHDDAPPMKKSVIKTG-SAKAPPETS 159
PP + S+ S+S S+DS + A P+KK+ K AKAP + +
Sbjct: 208 KPGPPAKAQPKAANGKAGSSSSSSSSSSSDDSEEEKKAAAPLKKTAPKKQVVAKAPVKVT 267
Query: 160 SRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKMKHATPVKSTIRTPKDSKAAGSVRKS 219
+ ++ S D+S + E +K MK S++ P S + +KS
Sbjct: 268 AAPTQKS---SSSEDSSSEE-------EEEQKKPMKKKAGPYSSVPPPSVSLS----KKS 313
Query: 220 KGETTSKGKGLNVSNKKRKHVSDHESDQDGEPTMPDISTTTRKRVKGKRVPM 271
G + K S ESD E + T + K P+
Sbjct: 314 VGAQSPKKAAAQTQPADSSADSSEESDSSSEEEKKTPAKTVVSKTPAKPAPV 365
>GAR2_SCHPO (P41891) Protein gar2
Length = 500
Score = 41.6 bits (96), Expect = 0.006
Identities = 46/246 (18%), Positives = 93/246 (37%), Gaps = 16/246 (6%)
Query: 27 LKSPSSHSTRVTRSSSGIAAQSSSPGHSPTPKKMRTKQVVT------------KKKTLRF 74
++ PS ++ IA QSS SP K K+ + K K
Sbjct: 23 IEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEE 82
Query: 75 SPPQDTSPISESDTENVADIPDLDIVHAEDLLDLASARVSEPPVQSNVEKSTSFSEDSVD 134
S + S S S++E+ + + +E +S+ SE V E+ S +S
Sbjct: 83 SSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSES-S 141
Query: 135 VHDDAPPMKKSVIKTGSAKAPPETSSRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKM 194
++ +++V+K K E+SS E +S+ ++S + + + +K
Sbjct: 142 SSSESEEEEEAVVKIEEKK---ESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKK 198
Query: 195 KHATPVKSTIRTPKDSKAAGSVRKSKGETTSKGKGLNVSNKKRKHVSDHESDQDGEPTMP 254
+ ++ S + DS + S ++ S+ + +K + S+ + +P+
Sbjct: 199 EGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQD 258
Query: 255 DISTTT 260
T T
Sbjct: 259 SNETCT 264
Score = 31.6 bits (70), Expect = 6.7
Identities = 18/103 (17%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 541 ASGTKGVTSTGKDDILA--ELKEISKTLQATIQASKVRKHNVDQLIKMLAAPADDEVSDP 598
+S ++ +S +++++ E K+ S + ++ S+ + V ++ + + +D
Sbjct: 112 SSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESS 171
Query: 599 ADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTS 641
+ + ++E+ E +++E + + ++EG + +DS S S S
Sbjct: 172 SSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDS 214
>YKK5_YEAST (P34250) Hypothetical 125.6 kDa protein in AAT1-GFA1
intergenic region
Length = 1132
Score = 41.2 bits (95), Expect = 0.008
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDAD 634
DD+ +D DD+D + D++++D DE + DD+NV+++ + D D
Sbjct: 599 DDKDNDNDDDDDKDDDVNDDDKDENVDDDENVDDDDDDDDDDD 641
Score = 33.1 bits (74), Expect = 2.3
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 596 SDPADDEDAEADLDEEDD-DEALSDDD---NVEEEGEYPTDADSTSESTSE 642
+D DD+D + D D++DD D+ ++DDD NV+++ D D + E
Sbjct: 593 NDKDDDDDKDNDNDDDDDKDDDVNDDDKDENVDDDENVDDDDDDDDDDDDE 643
Score = 31.6 bits (70), Expect = 6.7
Identities = 13/31 (41%), Positives = 21/31 (66%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDN 622
DD+V+D DE+ + D + +DDD+ DDD+
Sbjct: 612 DDDVNDDDKDENVDDDENVDDDDDDDDDDDD 642
Score = 31.2 bits (69), Expect = 8.8
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 592 DDEVSDPADDEDAEADLDEE---DDDEALSDDDNVEEEGEY 629
DD+ D +D+D + ++D++ DDD+ DDD+ E Y
Sbjct: 608 DDDKDDDVNDDDKDENVDDDENVDDDDDDDDDDDDEYHDSY 648
>SR40_YEAST (P32583) Suppressor protein SRP40
Length = 406
Score = 41.2 bits (95), Expect = 0.008
Identities = 53/243 (21%), Positives = 91/243 (36%), Gaps = 9/243 (3%)
Query: 29 SPSSHSTRVTRSSSGIAAQSSSPGHSPTPKKMRTKQVVTKKKTLRFSPPQDTSPISESDT 88
S SS S+ SSS ++ SSS S + + + + S ++S SES+
Sbjct: 65 SDSSDSSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESED 124
Query: 89 ENVADIPDLDIVHAEDLLDLASARVSEPPVQSNVEKSTSFSEDSVDVHDDAPPMKKSVIK 148
E + D ED + A+ +EP S+ E S+S S S + + S
Sbjct: 125 ETKKRARESD---NEDAKETKKAK-TEPESSSSSESSSSGSSSSSESESGSESDSDS-SS 179
Query: 149 TGSAKAPPETSSRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKMKHATPVKSTIRTPK 208
+ S+ + E+ S + S D+S D D + + S ++ S+ +
Sbjct: 180 SSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSS---DSDSSSSSSSSSSDSDS 236
Query: 209 DSKAAGSVRKSKGETTSKGKGLNVSNKKRKHVSDHESDQD-GEPTMPDISTTTRKRVKGK 267
DS ++ S +S + SD +SD D G + + T K +
Sbjct: 237 DSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAE 296
Query: 268 RVP 270
P
Sbjct: 297 ETP 299
Score = 37.4 bits (85), Expect = 0.12
Identities = 44/204 (21%), Positives = 82/204 (39%), Gaps = 13/204 (6%)
Query: 38 TRSSSGIAAQSSSPGHSPTPKKMRTKQVVTKKKTLRFSPPQDTSPISESDTENVADIPDL 97
T S +++SSS G S + + + + + S D+ SESD+++ +
Sbjct: 146 TEPESSSSSESSSSGSSSSSESESGSESDSDSSSSS-SSSSDSESDSESDSQSSSSSSSS 204
Query: 98 DIVHAEDLLDLASARVSEPPVQSNVEKSTSFSEDSVDVHDDAPPMKKSVIKTGSAKAPPE 157
D + D +S S+ S+ S+S S+ D D+ S + S + E
Sbjct: 205 D--SSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDE 262
Query: 158 TSSRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKMKHATPVKSTIRTPKDSKAAGSVR 217
++S + DSD D+ ++ K E+ + TP S TP S ++ + +
Sbjct: 263 STSSDSSDS---DSDSDSGSSSELETK--EATADESKAEETPASSNESTPSASSSSSANK 317
Query: 218 KSKGETTSKGKGLNVSNKKRKHVS 241
+ T + + +RKH S
Sbjct: 318 LNIPAGTDE-----IKEGQRKHFS 336
Score = 36.2 bits (82), Expect = 0.27
Identities = 47/223 (21%), Positives = 82/223 (36%), Gaps = 13/223 (5%)
Query: 29 SPSSHSTRVTRSSSGIAAQSSSPGHSPTPKKMRTKQVVTKKKTLRFSPPQDTSPISESDT 88
S SS S+ + SSS ++ SSS G S + + + S ++S S S +
Sbjct: 27 SSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSD---SSDSESSSSSSSSS 83
Query: 89 ENVADIPDLDIVHAEDLLDLASARVSEPPVQSNVEKSTSFSEDSVDVHDDAPPMKKSVIK 148
+ + D + D +S+ S S+ ++S+S SE + A K
Sbjct: 84 SSSSSSSDSESSSESD----SSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAK 139
Query: 149 -TGSAKAPPETSSRKGKEHVILDSDGDTSDDVDVTVKNIESRLRKKMKHATPVKSTIRTP 207
T AK PE+SS S G +S + +S ++ +S +
Sbjct: 140 ETKKAKTEPESSSSSES-----SSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESD 194
Query: 208 KDSKAAGSVRKSKGETTSKGKGLNVSNKKRKHVSDHESDQDGE 250
S ++ S S ++ S + + S SD D +
Sbjct: 195 SQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSD 237
Score = 31.6 bits (70), Expect = 6.7
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 591 ADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
+D + S + D+ +D D D + SD D+ +D+DS S+S+S+
Sbjct: 193 SDSQSSSSSSSSDSSSDSDSSSSDSS-SDSDSSSSSSSSSSDSDSDSDSSSD 243
>RLA0_HALMA (P15825) 50S ribosomal protein L10E (Ribosomal protein
L10) (Acidic ribosomal protein P0 homolog) (L10E)
(HMal10)
Length = 348
Score = 41.2 bits (95), Expect = 0.008
Identities = 28/89 (31%), Positives = 43/89 (47%), Gaps = 9/89 (10%)
Query: 563 SKTLQATIQASKVRKHNV---DQLIKMLAAPADDEVSDPADDEDAEADL------DEEDD 613
S LQA I+ +V V D ++ LA+ DDE + P + + EAD+ D++DD
Sbjct: 254 SLALQAAIEDPEVVPDLVSKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDD 313
Query: 614 DEALSDDDNVEEEGEYPTDADSTSESTSE 642
D A DD + ++ E D D E +
Sbjct: 314 DTASEDDADADDAAEEADDDDDDDEDAGD 342
>P2CG_MOUSE (Q61074) Protein phosphatase 2C gamma isoform (EC
3.1.3.16) (PP2C-gamma) (Protein phosphatase
magnesium-dependent 1 gamma) (Protein phosphatase 1C)
(Fibroblast growth factor inducible protein 13) (FIN13)
Length = 542
Score = 41.2 bits (95), Expect = 0.008
Identities = 32/121 (26%), Positives = 56/121 (45%), Gaps = 7/121 (5%)
Query: 523 AGTHVPNIVLNAPKDAPSASGTKGVTSTGKDDILAELKEISKTLQATIQASKVRKHNVDQ 582
AG P+ + ++ P+A G G +S + E +IS+ AT +A D+
Sbjct: 190 AGPEDPSRETPSQENGPTAKGHTGFSSNSEHG--TEAGQISEPGTATGEAGPSCSSASDK 247
Query: 583 LIKMLAAPADDEVSDPADDEDAEADLDEEDDDEALSDDDNV-EEEGEYPTDADSTSESTS 641
L ++ A + + ++DE E + +E+D +E D+D EE E D D T E+
Sbjct: 248 LPRV----AKSKFFEDSEDESDEVEEEEDDSEECSEDEDGYSSEEAENEEDEDDTEEAEE 303
Query: 642 E 642
+
Sbjct: 304 D 304
>IF2_CHLCV (Q823F2) Translation initiation factor IF-2
Length = 887
Score = 41.2 bits (95), Expect = 0.008
Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 24/239 (10%)
Query: 16 VKNAHGVRFLGLKSPSSHSTRVTRSSSGIAAQSSSPGHSPTPKKMRTKQVVTKKKTLRFS 75
+KNA + GL ++ ++ S SS + P+K+ ++VV KK +
Sbjct: 14 IKNAQLTKAAGLDKLKQ---KLAQAGSSETKSSSEKPSTKVPEKIAKEKVVKKKSVVDPG 70
Query: 76 PPQDTSPISESDTENVADIPDLDIVHAEDL--------LDLASARVSEPPVQSNVEKSTS 127
P T P+S ++ + +EDL +D ++ S+ V VE+ S
Sbjct: 71 VPTMTEPVSAENSPRRIRAKNHSSFVSEDLNSPQPPVPVDSDASAFSDSAV---VEEVDS 127
Query: 128 FSEDSVDVHDDAPPMKKSVIKTGSAKAPPETSSRKGKEHVILDSDGDTSDDVDVTVKNIE 187
F E ++ PP + AK PP + K + V++ + S V +I+
Sbjct: 128 FVETEQEISVSTPPPPVTEETEVVAKEPP---APKKEPEVVVKKEPPKS------VVSIK 178
Query: 188 SRLRKKMKHATP-VKSTIRTPKDSKAAGSVRKSKGETTSKGKGLNVSNKKRKHVSDHES 245
S KH + T + PK K+K T + + SN K ++ S
Sbjct: 179 SNFGPTGKHINHLLAKTFKAPKKEDKPAPKEKTKTTQTKPQQSSDASNDKHHSPTNRTS 237
>A4_CAVPO (Q60495) Amyloid beta A4 protein precursor (APP) (ABPP)
(Alzheimer's disease amyloid protein homolog) [Contains:
Soluble APP-alpha (S-APP-alpha); Soluble APP-beta
(S-APP-beta); CTF-alpha; CTF-beta; Beta-amyloid protein
42 (Beta-APP42); Beta-amyl
Length = 770
Score = 41.2 bits (95), Expect = 0.008
Identities = 21/52 (40%), Positives = 37/52 (70%), Gaps = 2/52 (3%)
Query: 591 ADDEVSDPADDED-AEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTS 641
++D+V + A++E+ A+ + +E DDDE + D D VEEE E P + ++T ++TS
Sbjct: 221 SEDKVVEVAEEEEVADVEEEEADDDEDVEDGDEVEEEAEEPYE-EATEKTTS 271
>VHS3_YEAST (Q08438) Protein VHS3 (Viable in a HAL3 SIT4 background
protein 3)
Length = 674
Score = 40.8 bits (94), Expect = 0.011
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DD+ D DD+D + D D++DDD+ DDD+ +++ + D D E E
Sbjct: 608 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDEDE 658
Score = 40.8 bits (94), Expect = 0.011
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSE 638
DD+ D DD+D + D D++DDD+ DDD+ +++ E D D E
Sbjct: 615 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDEDEDDE 661
Score = 40.0 bits (92), Expect = 0.019
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DD+ D DD+D + D D++DDD+ DDD+ +++ + D D E +
Sbjct: 610 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDEDEDD 660
Score = 40.0 bits (92), Expect = 0.019
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DD+ D DD+D + D D++DDD+ DDD+ ++E + D D + +
Sbjct: 617 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDEDEDDEGKKKED 667
Score = 39.7 bits (91), Expect = 0.025
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DD+ D DD+D + D D++DDD+ DDD+ +++ + D D + E
Sbjct: 606 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDE 656
Score = 38.9 bits (89), Expect = 0.042
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 593 DEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DE +D DD+D + D D++DDD+ DDD+ +++ + D D + E
Sbjct: 602 DEDNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDE 651
Score = 38.5 bits (88), Expect = 0.055
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DD+ D DD+D + D D++DDD+ DDD+ +++ + D D + +
Sbjct: 607 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDED 657
Score = 38.1 bits (87), Expect = 0.072
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSES 639
DD+ D DD+D + D D++DDD+ +D++ ++EG+ D S
Sbjct: 627 DDDDDDDDDDDDDDDDDDDDDDDDEDDEDEDEDDEGKKKEDKGGLQRS 674
Score = 38.1 bits (87), Expect = 0.072
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DD+ D DD+D + D D++DDD+ DDD+ +++ + + D + E
Sbjct: 611 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDEDEDDE 661
Score = 37.7 bits (86), Expect = 0.094
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
D++ D DD+D + D D++DDD+ DDD+ +++ + D D + E
Sbjct: 604 DNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDE 654
Score = 37.7 bits (86), Expect = 0.094
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
+D+ D DD+D + D D++DDD+ DDD+ +++ + D D E +
Sbjct: 605 NDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDED 655
Score = 37.0 bits (84), Expect = 0.16
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
D++ D DD+D + D D++DDD+ DDD+ +++ + D D + +
Sbjct: 602 DEDNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDED 652
Score = 36.2 bits (82), Expect = 0.27
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
+D D DD+D + D D++DDD+ DDD+ +++ + D D + +
Sbjct: 603 EDNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDEDD 653
Score = 32.0 bits (71), Expect = 5.1
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 10/61 (16%)
Query: 592 DDEVSDPAD----------DEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTS 641
+DE +D D DED + D D++DDD+ DDD+ +++ + D D +
Sbjct: 583 EDEDNDEEDDNKKNDTGGKDEDNDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD 642
Query: 642 E 642
+
Sbjct: 643 D 643
>S521_RAT (Q9QY02) Putative splicing factor YT521 (RA301-binding
protein)
Length = 738
Score = 40.8 bits (94), Expect = 0.011
Identities = 21/56 (37%), Positives = 31/56 (54%), Gaps = 5/56 (8%)
Query: 592 DDEVSDPADD-----EDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
D+EV + DD EDAE + DEE+D+E +++ EEE EY D E ++
Sbjct: 211 DEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEEEYEQDERDQKEEGND 266
Score = 33.9 bits (76), Expect = 1.4
Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 591 ADDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEG-EYPT---DADSTSESTS 641
A++E + D+E+ + + +EE+++E D+ + +EEG +Y T +DS SES S
Sbjct: 228 AEEEEDEEEDEEEEDEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVS 282
Score = 32.3 bits (72), Expect = 3.9
Identities = 16/51 (31%), Positives = 25/51 (48%)
Query: 592 DDEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
++E + +ED E D D +DD+E D + E+E E + D E E
Sbjct: 200 EEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEE 250
Score = 31.6 bits (70), Expect = 6.7
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 545 KGVTSTGKDDILAEL-KEISKTLQATIQASKVRKHNVDQLIKMLAAPA---DDEVSDPAD 600
K T G + I E+ + S++ Q++ + ++ D A+ + E +
Sbjct: 145 KSPTPDGSERIGLEVDRRASRSSQSSKEEGNSEEYGSDHETGSSASSEQGNNTENEEEGG 204
Query: 601 DEDAEAD--LDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
+ED E D +DE+ DD+ D+D EEE E + + E E
Sbjct: 205 EEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEE 248
>TUR8_MOUSE (P19473) Tumor rejection antigen P815A
Length = 224
Score = 40.4 bits (93), Expect = 0.014
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 593 DEVSDPADDEDAEADLDEEDDDEALSDDDNVEEEGEYPTDADSTSESTSE 642
DE D DDED D +++DDD D+D+ EEE E D +S E+ E
Sbjct: 83 DEDEDDEDDEDDYYDDEDDDDDAFYDDEDDEEEELENLMDDESEDEAEEE 132
>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa
neurofilament protein) (Neurofilament heavy polypeptide)
(NF-H) (Fragment)
Length = 831
Score = 40.4 bits (93), Expect = 0.014
Identities = 53/275 (19%), Positives = 102/275 (36%), Gaps = 20/275 (7%)
Query: 7 KQSAPGLVPVKNAHGVRFLGLKSPSSHSTRVT--------RSSSGIAAQSSSPGHSPTPK 58
K +P K+ + L +KSP + RS + + + SP +
Sbjct: 564 KAKSPMRKEAKSPEKAKTLDVKSPEAKPPAKEEAKRPADIRSPEQVKSPAKEEAKSPEKE 623
Query: 59 KMRTKQVVTKKKTLRFSPPQDTSPISESDTENVADIPDLDIVHAEDLLDLASARVSEPPV 118
+ RT++V KK+ ++ SP+ E + + + A ++ ++ E P
Sbjct: 624 ETRTEKVAPKKEEVK-------SPVEEVKAKEPPKKVEEEKTPATPKTEVKESKKDEAPK 676
Query: 119 QSNVEKSTSFSEDSVDVHDDAPPMKKSVIKTGSAKAPPETSSRK--GKEHVILDSDGDTS 176
++ K+ + D KK K A AP E + K KE + +
Sbjct: 677 EAQKPKAEEKEPLTEKPKDSPGEAKKEEAKEKKAAAPEEETPAKLGVKEEAKPKEKAEDA 736
Query: 177 DDVDVTVKNIESRLRKKMKHATPVKSTIRTPKDSKAAGSVRKSKGETTSK--GKGL-NVS 233
+ + + + + +K+ A P K + K +++ K K E +K KGL
Sbjct: 737 KAKEPSKPSEKEKPKKEEVPAAPEKKDTKEEKTTESKKREEKPKMEAKAKEEDKGLPQEP 796
Query: 234 NKKRKHVSDHESDQDGEPTMPDISTTTRKRVKGKR 268
+K + ++ S D + + P K KG +
Sbjct: 797 SKPKTEKAEKSSSTDQKDSQPSEKAPEDKAAKGDK 831
>MAPA_RAT (P34926) Microtubule-associated protein 1A (MAP 1A)
[Contains: MAP1 light chain LC2]
Length = 2774
Score = 40.4 bits (93), Expect = 0.014
Identities = 55/238 (23%), Positives = 89/238 (37%), Gaps = 34/238 (14%)
Query: 68 KKKTL-RFSPPQDTSPISESDTENVADIPDLDIVHAEDLLDLASARVSEPPVQSNVE--K 124
K+K L R Q P +E D + DL A + D A R ++E
Sbjct: 1399 KEKDLDREDQGQRAGPPAEKDKASEQRDTDLQQTQATEPRDRAQERRDSEEKDKSLELRD 1458
Query: 125 STSFSEDSVDVHDDAPPMKKSVIKTGSAKAPP-----------ETSSRK----------- 162
T +D + V +D P T + +AP E S K
Sbjct: 1459 RTPEEKDRILVQEDRAPEHSIPEPTQTDRAPDRKGTDDKEQKEEASEEKEQVLEQKDWAL 1518
Query: 163 GKEHVILDSDGDTSDDVDVTVKNIESRLRKKM---KHATPVKSTIRTPKDSKAAGSVRKS 219
GKE LD + T++ D T+K +++ +K T K T+ K ++ A SV +
Sbjct: 1519 GKEGETLDQEARTAEQKDETLKEDKTQGQKSSFVEDKTTTSKETVLDQKSAEKADSVEQQ 1578
Query: 220 KGETTSKGKGLNV------SNKKRKHVSDHESDQDGEPTMPDISTTTRKRVKGKRVPM 271
G K + L + +K R+ + +QD + S T + V G++ P+
Sbjct: 1579 DGAALEKTRALGLEESPAEGSKAREQEKKYWKEQDVVQGWRETSPTRGEPVGGQKEPV 1636
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.310 0.128 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,922,884
Number of Sequences: 164201
Number of extensions: 3304583
Number of successful extensions: 20926
Number of sequences better than 10.0: 463
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 291
Number of HSP's that attempted gapping in prelim test: 15302
Number of HSP's gapped (non-prelim): 2789
length of query: 642
length of database: 59,974,054
effective HSP length: 117
effective length of query: 525
effective length of database: 40,762,537
effective search space: 21400331925
effective search space used: 21400331925
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0370.9