BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0369c.6
(143 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
H2B_GOSHI (O22582) Histone H2B 234 5e-62
H2B_ARATH (P40283) Histone H2B 230 9e-61
H2B_TOBAC (P93354) Histone H2B 222 2e-58
H2B_CAPAN (O49118) Histone H2B (CaH2B) 219 2e-57
H2B4_MAIZE (P49120) Histone H2B.4 217 6e-57
H2B3_MAIZE (Q43261) Histone H2B.3 214 4e-56
H2B1_MAIZE (P30755) Histone H2B.1 214 7e-56
H2B1_WHEAT (P27807) Histone H2B 212 2e-55
H2B2_MAIZE (P30756) Histone H2B.2 211 6e-55
H2B5_MAIZE (P54348) Histone H2B 209 2e-54
H2B2_WHEAT (P05621) Histone H2B.2 200 1e-51
H2B2_CHLRE (P54345) Histone H2B-II 189 1e-48
H2B1_CHLRE (P50565) Histone H2B-I 189 2e-48
H2B4_CHLRE (P54347) Histone H2B-IV 188 4e-48
H2B3_CHLRE (P54346) Histone H2B-III 188 4e-48
H2B3_VOLCA (P16867) Histone H2B-III 187 7e-48
H2B4_VOLCA (P16868) Histone H2B-IV 186 1e-47
H2B_AJECA (Q7Z9J4) Histone H2B 173 1e-43
H2B_NEUCR (P37210) Histone H2B 172 2e-43
H2B_EMENI (P23754) Histone H2B 170 1e-42
>H2B_GOSHI (O22582) Histone H2B
Length = 147
Score = 234 bits (597), Expect = 5e-62
Identities = 125/145 (86%), Positives = 132/145 (90%), Gaps = 5/145 (3%)
Query: 3 KGDKKPAEKKPAAAEEKAAA----AEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKI 58
K +KKPAEKKPA E+KA A AEKKP+A KK+P + G AAGDKKKKR KK+VETYKI
Sbjct: 4 KAEKKPAEKKPAE-EKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETYKI 62
Query: 59 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 118
YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVR
Sbjct: 63 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVR 122
Query: 119 LVLPGELAKHAVSEGTKAVTKFTSS 143
LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 LVLPGELAKHAVSEGTKAVTKFTSS 147
>H2B_ARATH (P40283) Histone H2B
Length = 150
Score = 230 bits (586), Expect = 9e-61
Identities = 124/148 (83%), Positives = 132/148 (88%), Gaps = 8/148 (5%)
Query: 3 KGDKKPAEKKPAA---AEEKAAA----AEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVET 55
K +KKPAEKKPA+ EEK+ A AEKKP+A KK+P KE GA GDKKKK KK+VET
Sbjct: 4 KAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLP-KEAGAGGDKKKKMKKKSVET 62
Query: 56 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 115
YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQT
Sbjct: 63 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQT 122
Query: 116 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 AVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>H2B_TOBAC (P93354) Histone H2B
Length = 146
Score = 222 bits (565), Expect = 2e-58
Identities = 117/144 (81%), Positives = 129/144 (89%), Gaps = 4/144 (2%)
Query: 3 KGDKKPAEKKPAAAEE---KAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIY 59
+ DKKPAEKKP A + + A AEKKPRA KK+P ++ GAAGDKKKKR++ +VETYKIY
Sbjct: 4 RADKKPAEKKPGAEKTPVAEKAPAEKKPRAGKKLP-RDAGAAGDKKKKRAEMSVETYKIY 62
Query: 60 IFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRL 119
IF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+ESSRLA YNKKPTI+SREIQTAVRL
Sbjct: 63 IFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRL 122
Query: 120 VLPGELAKHAVSEGTKAVTKFTSS 143
VLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 VLPGELAKHAVSEGTKAVTKFTSS 146
>H2B_CAPAN (O49118) Histone H2B (CaH2B)
Length = 145
Score = 219 bits (558), Expect = 2e-57
Identities = 120/145 (82%), Positives = 126/145 (86%), Gaps = 7/145 (4%)
Query: 2 AKGDKKPAEKKPAAAEEKAAA---AEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKI 58
A KKPAEKKP EEK A AEKKP+A KK+P G DKKKKR+KK++ETYKI
Sbjct: 5 AAAGKKPAEKKPV--EEKKAEEVPAEKKPKAGKKLPKDAGRP--DKKKKRAKKSIETYKI 60
Query: 59 YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 118
YIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR
Sbjct: 61 YIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVR 120
Query: 119 LVLPGELAKHAVSEGTKAVTKFTSS 143
LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTSS 145
>H2B4_MAIZE (P49120) Histone H2B.4
Length = 137
Score = 217 bits (553), Expect = 6e-57
Identities = 116/141 (82%), Positives = 126/141 (89%), Gaps = 7/141 (4%)
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFK 62
K +KKPAEKKP EEKA EKKPRAEK++P KEGG K KK++KK+VETYKIYIFK
Sbjct: 4 KAEKKPAEKKPT--EEKA---EKKPRAEKRVPGKEGGEK--KGKKKAKKSVETYKIYIFK 56
Query: 63 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 122
VLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLP
Sbjct: 57 VLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLP 116
Query: 123 GELAKHAVSEGTKAVTKFTSS 143
GELAKHAVSEGTKAVTKFTSS
Sbjct: 117 GELAKHAVSEGTKAVTKFTSS 137
>H2B3_MAIZE (Q43261) Histone H2B.3
Length = 153
Score = 214 bits (546), Expect = 4e-56
Identities = 119/151 (78%), Positives = 129/151 (84%), Gaps = 11/151 (7%)
Query: 3 KGDKKPAEKKPAAAE---EKA--AAAEKKPRAEKKIPA-----KEGGAAGDKKKKRSKKN 52
K DKKPA KKPA E EKA A A KKP+AEK++PA KEGG G K KK++KK+
Sbjct: 4 KADKKPAAKKPAEEEPATEKAEKAPAGKKPKAEKRLPAGKSAGKEGGE-GKKGKKKAKKS 62
Query: 53 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 112
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPT+TSRE
Sbjct: 63 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSRE 122
Query: 113 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153
>H2B1_MAIZE (P30755) Histone H2B.1
Length = 151
Score = 214 bits (544), Expect = 7e-56
Identities = 113/141 (80%), Positives = 126/141 (89%), Gaps = 4/141 (2%)
Query: 6 KKPAEKKPAAAEEKAAAAEKKPRAEKKIPA---KEGGAAGDKKKKRSKKNVETYKIYIFK 62
KKPAE++PA + + A A KKP+AEK++PA KEGG G K KK++KK+VETYKIYIFK
Sbjct: 12 KKPAEEEPATEKVEKAPAGKKPKAEKRLPAGKSKEGGE-GKKGKKKAKKSVETYKIYIFK 70
Query: 63 VLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLP 122
VLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLP
Sbjct: 71 VLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLP 130
Query: 123 GELAKHAVSEGTKAVTKFTSS 143
GELAKHAVSEGTKAVTKFTSS
Sbjct: 131 GELAKHAVSEGTKAVTKFTSS 151
>H2B1_WHEAT (P27807) Histone H2B
Length = 152
Score = 212 bits (539), Expect = 2e-55
Identities = 115/149 (77%), Positives = 127/149 (85%), Gaps = 8/149 (5%)
Query: 3 KGDKKPAEKKPAAAEEKAAAAEK-----KPRAEKKIPAKEGGA--AGDKK-KKRSKKNVE 54
K +KKPA KKPA E A AEK KP+AEK++PA + A GDKK KK++KK+VE
Sbjct: 4 KAEKKPAAKKPAEEEPAAEKAEKTPAGKKPKAEKRLPAGKSAAKEGGDKKGKKKAKKSVE 63
Query: 55 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 114
TYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQ
Sbjct: 64 TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQ 123
Query: 115 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
T+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 124 TSVRLVLPGELAKHAVSEGTKAVTKFTSS 152
>H2B2_MAIZE (P30756) Histone H2B.2
Length = 150
Score = 211 bits (536), Expect = 6e-55
Identities = 114/148 (77%), Positives = 126/148 (85%), Gaps = 8/148 (5%)
Query: 3 KGDKKPAEKKPAAAEEKA--AAAEKKPRAEKKIPA-----KEGGAAGDKKKKRSKKNVET 55
K +KKPA KKPA E A A A KKP+AEK++PA KEGG G + +K+ KK+VET
Sbjct: 4 KAEKKPAAKKPAEEEPAAEKAPAGKKPKAEKRVPAGKSAGKEGGE-GKRGRKKGKKSVET 62
Query: 56 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 115
YKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT
Sbjct: 63 YKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQT 122
Query: 116 AVRLVLPGELAKHAVSEGTKAVTKFTSS 143
+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 123 SVRLVLPGELAKHAVSEGTKAVTKFTSS 150
>H2B5_MAIZE (P54348) Histone H2B
Length = 154
Score = 209 bits (531), Expect = 2e-54
Identities = 116/151 (76%), Positives = 129/151 (84%), Gaps = 10/151 (6%)
Query: 3 KGDKKPAEKKPAAAE--EKAAAAEK-----KPRAEKKIPAKE--GGAAGDKK-KKRSKKN 52
K +KKPA KK A E EKAA AEK KP+AEK++PA + G GDKK +K++KK+
Sbjct: 4 KAEKKPAAKKVAEEEPSEKAAPAEKAPAGKKPKAEKRLPAGKSAGKEGGDKKGRKKAKKS 63
Query: 53 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSRE 112
VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSRE
Sbjct: 64 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSRE 123
Query: 113 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
IQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 124 IQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154
>H2B2_WHEAT (P05621) Histone H2B.2
Length = 149
Score = 200 bits (508), Expect = 1e-51
Identities = 111/149 (74%), Positives = 120/149 (80%), Gaps = 11/149 (7%)
Query: 5 DKKPA-EKKPAAAEEKAAAAEKKPRAEKKIPAK---------EGGAAGDKKKKRSKKNVE 54
BKKPA E K A EK A KKP+AEK++PA EG G KK ++KK VE
Sbjct: 2 BKKPAAENKVEKAAEKTPAG-KKPKAEKRLPAGKTASKEAGGEGKTRGRKKGSKAKKGVE 60
Query: 55 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQ 114
TYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQ
Sbjct: 61 TYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQ 120
Query: 115 TAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
T+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 TSVRLVLPGELAKHAVSEGTKAVTKFTSS 149
>H2B2_CHLRE (P54345) Histone H2B-II
Length = 156
Score = 189 bits (481), Expect = 1e-48
Identities = 104/152 (68%), Positives = 116/152 (75%), Gaps = 12/152 (7%)
Query: 3 KGDKKPAEKKPA--AAEEKAAAAEKKPRAEK----------KIPAKEGGAAGDKKKKRSK 50
K D+KPA + A E A AE KP+AEK K AKE G+KK K+ K
Sbjct: 4 KKDEKPATRAATQEAGVEATAKAEAKPKAEKAAKKAKKEPAKKAAKEPKGDGEKKDKKKK 63
Query: 51 KNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITS 110
VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TS
Sbjct: 64 SAVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTS 123
Query: 111 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 142
REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 124 REIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155
>H2B1_CHLRE (P50565) Histone H2B-I
Length = 153
Score = 189 bits (480), Expect = 2e-48
Identities = 104/151 (68%), Positives = 120/151 (78%), Gaps = 13/151 (8%)
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEK----------KIPAKEGGAAGDKKKKRSKKN 52
K D+KP ++ A E A AE+KP+AEK K AKE +G+KK K+ KK+
Sbjct: 4 KKDEKPPTQEAGA--EAPAKAERKPKAEKAAKKAKKEPSKKAAKEPKGSGEKKDKKKKKS 61
Query: 53 -VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSR
Sbjct: 62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSR 121
Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 142
EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 122 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152
>H2B4_CHLRE (P54347) Histone H2B-IV
Length = 153
Score = 188 bits (477), Expect = 4e-48
Identities = 105/151 (69%), Positives = 118/151 (77%), Gaps = 13/151 (8%)
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEK----------KIPAKEGGAAGDKKKKRSKKN 52
K D+KPA + A E A AE KP+AEK K AKE G+KK K+ KK+
Sbjct: 4 KKDEKPATAEAGA--EAPAKAEAKPKAEKAAKKAKKEPSKKAAKEPKGDGEKKDKKKKKS 61
Query: 53 -VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSR
Sbjct: 62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSR 121
Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 142
EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 122 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152
>H2B3_CHLRE (P54346) Histone H2B-III
Length = 153
Score = 188 bits (477), Expect = 4e-48
Identities = 105/151 (69%), Positives = 118/151 (77%), Gaps = 13/151 (8%)
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRAEK----------KIPAKEGGAAGDKKKKRSKKN 52
K D+KPA + A E A AE KP+AEK K AKE G+KK K+ KK+
Sbjct: 4 KKDEKPATAEAGA--EAPAKAEAKPKAEKAGKKAKKEPAKKAAKEPKGDGEKKDKKKKKS 61
Query: 53 -VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
VETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSR
Sbjct: 62 AVETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSR 121
Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 142
EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct: 122 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152
>H2B3_VOLCA (P16867) Histone H2B-III
Length = 157
Score = 187 bits (475), Expect = 7e-48
Identities = 104/154 (67%), Positives = 118/154 (76%), Gaps = 13/154 (8%)
Query: 3 KGDKKPAEKKPAAAEEKAAAAEKKPRA----EKKIPAKE-------GGAAGDKKKKRSKK 51
K ++KPA + A E KA A K +A EKK PAK+ GG GDKK K+ K
Sbjct: 4 KKEEKPASQAAEAPEVKAEAKPKAVKAPKKKEKKAPAKKVAKEPSAGGEDGDKKSKKKAK 63
Query: 52 --NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTIT 109
ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+T
Sbjct: 64 VAKSETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVT 123
Query: 110 SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 124 SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157
>H2B4_VOLCA (P16868) Histone H2B-IV
Length = 155
Score = 186 bits (473), Expect = 1e-47
Identities = 107/152 (70%), Positives = 120/152 (78%), Gaps = 15/152 (9%)
Query: 7 KPAEKKPA--AAEEKAAA---AEKKP-RAEKKIPAKEG--------GAAGDKKKKRSK-K 51
K E+KPA A E KA A AEK P + EKK PAK+ A GDKKKK++K
Sbjct: 4 KTKEEKPASEAVEPKAEAKPKAEKAPKKKEKKAPAKKSAKEPAAGDAAEGDKKKKKAKVA 63
Query: 52 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 111
ETYK+YI+KVLKQVHPD GISSKAM IMNSFINDIFEK+A E+S+L+RYNKKPT+TSR
Sbjct: 64 KSETYKLYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSR 123
Query: 112 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 143
EIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct: 124 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155
>H2B_AJECA (Q7Z9J4) Histone H2B
Length = 137
Score = 173 bits (439), Expect = 1e-43
Identities = 93/137 (67%), Positives = 111/137 (80%), Gaps = 4/137 (2%)
Query: 7 KPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVLKQ 66
K AEKKP+ A + A A K P EKK K+ AAG +KKKRSK ETY YI+KVLKQ
Sbjct: 3 KAAEKKPSTAGK--APAGKAP--EKKEAGKKTTAAGGEKKKRSKTRKETYSSYIYKVLKQ 58
Query: 67 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 126
VHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELA
Sbjct: 59 VHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELA 118
Query: 127 KHAVSEGTKAVTKFTSS 143
KHAVSEGTKAVTK++SS
Sbjct: 119 KHAVSEGTKAVTKYSSS 135
>H2B_NEUCR (P37210) Histone H2B
Length = 137
Score = 172 bits (437), Expect = 2e-43
Identities = 92/137 (67%), Positives = 112/137 (81%), Gaps = 5/137 (3%)
Query: 7 KPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVLKQ 66
KPA+KKPA+ + A A K P EKK K+ A+GDKKK R+K ETY YI+KVLKQ
Sbjct: 4 KPADKKPAS--KAPATASKAP--EKKDAGKKTAASGDKKK-RTKARKETYSSYIYKVLKQ 58
Query: 67 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 126
VHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELA
Sbjct: 59 VHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELA 118
Query: 127 KHAVSEGTKAVTKFTSS 143
KHAVSEGTKAVTK++SS
Sbjct: 119 KHAVSEGTKAVTKYSSS 135
>H2B_EMENI (P23754) Histone H2B
Length = 139
Score = 170 bits (430), Expect = 1e-42
Identities = 88/137 (64%), Positives = 107/137 (77%), Gaps = 2/137 (1%)
Query: 7 KPAEKKPAAAEEKAAAAEKKPRAEKKIPAKEGGAAGDKKKKRSKKNVETYKIYIFKVLKQ 66
K AEKKP+ + A A K P +K+ K AA +KKKR K ETY YI+KVLKQ
Sbjct: 3 KAAEKKPSTGGK--APAGKAPAEKKEAGKKTAAAASGEKKKRGKTRKETYSSYIYKVLKQ 60
Query: 67 VHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELA 126
VHPD GIS++AM I+NSF+NDIFE++A E+S+LA YNKK TI+SREIQT+VRL+LPGELA
Sbjct: 61 VHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELA 120
Query: 127 KHAVSEGTKAVTKFTSS 143
KHAVSEGTKAVTK++SS
Sbjct: 121 KHAVSEGTKAVTKYSSS 137
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.308 0.125 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,115,302
Number of Sequences: 164201
Number of extensions: 572014
Number of successful extensions: 5218
Number of sequences better than 10.0: 425
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 3611
Number of HSP's gapped (non-prelim): 1324
length of query: 143
length of database: 59,974,054
effective HSP length: 99
effective length of query: 44
effective length of database: 43,718,155
effective search space: 1923598820
effective search space used: 1923598820
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0369c.6