BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0369c.3
(975 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor 47 2e-04
DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1) 40 0.030
YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P... 38 0.15
YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C... 37 0.26
SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment) 37 0.26
PYGO_DROME (Q9V9W8) Pygopus protein (Gammy legs protein) 37 0.26
PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment) 37 0.26
1A1A_ARATH (Q9LQ10) Probable aminotransferase ACS10 (EC 2.6.1.-) 37 0.26
NK61_RAT (O35762) Homeobox protein Nkx-6.1 37 0.34
NK61_MOUSE (Q99MA9) Homeobox protein Nkx-6.1 37 0.34
RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacti... 36 0.44
YTFQ_ECOLI (P39325) ABC transporter periplasmic binding protein ... 36 0.57
YIQ9_YEAST (P40442) Hypothetical 99.7 kDa protein in SDL1 5'regi... 36 0.57
VIT2_CHICK (P02845) Vitellogenin II precursor (Major vitellogeni... 36 0.57
NK61_MESAU (Q60554) Homeobox protein Nkx-6.1 36 0.57
YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 in ... 35 0.75
YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A... 35 0.98
Y4SI_RHISN (P55652) Probable chemoreceptor Y4SI (Methyl-acceptin... 35 0.98
FX41_MOUSE (Q6NS60) F-box only protein 41 35 1.3
CDSN_HUMAN (Q15517) Corneodesmosin precursor (S protein) 35 1.3
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor
Length = 374
Score = 47.4 bits (111), Expect = 2e-04
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 38 AAKHAMAPFAKSQTMPPLPSRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGL 97
++ + +P + S T PS S SS SS +SS+++SS + S + S+ S S
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 98 GSYASLFPGQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMS----------- 146
S +S +P+T S+ S+SS++ S SS S +MS
Sbjct: 197 SSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVT 256
Query: 147 -SAAKANLPAKVSGSVVMLARPASRS 171
S++ ++ ++V S LA AS++
Sbjct: 257 PSSSSSSTSSEVPSSTAALALNASKA 282
Score = 37.4 bits (85), Expect = 0.20
Identities = 42/173 (24%), Positives = 73/173 (41%), Gaps = 22/173 (12%)
Query: 59 SHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIPVTLFVFVD 118
S SS+SS TSS+++SSP + S+ S S S
Sbjct: 128 SSSSVSST-TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS------------------- 167
Query: 119 DFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVSGSVVMLARPASRSEGGFRKK 178
S+ S+SS++ SS SS S S+S SS++ ++ + S SV + + +S
Sbjct: 168 --SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSS 225
Query: 179 LQASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTSTSAPLFSLDASRAVVLLD 231
+S ++ T+S S + T +S+S+ + +S A + L+
Sbjct: 226 SSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALN 278
>DAH1_MOUSE (Q9QYB2) Dachshund homolog 1 (Dach1)
Length = 751
Score = 40.0 bits (92), Expect = 0.030
Identities = 35/111 (31%), Positives = 49/111 (43%), Gaps = 14/111 (12%)
Query: 54 PLPSRSHSSLSSRPTS--------SANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFP 105
P+ S + SS ++ TS S G GGGG + N S + SG G A
Sbjct: 59 PIASSASSSAAATVTSPGGGGGGSGGGGGSGGNGGGGGSNCNPSLAAGSSGGGVSAGGGG 118
Query: 106 GQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAK 156
P+T + S+SS++ SS SS S S+S SS++ LP K
Sbjct: 119 ASSTPITA------STGSSSSSSSSSSSSSSSSSSSSSSSSSSSCGPLPGK 163
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein
PB15E9.01c in chromosome I precursor
Length = 943
Score = 37.7 bits (86), Expect = 0.15
Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 33/280 (11%)
Query: 59 SHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAM--------SLMSGLGSYASLFPGQCIP 110
S SSL+S T+S ++SP + S S++ SL S + +SL
Sbjct: 87 SSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITS 146
Query: 111 VTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVS-GSVVMLARPAS 169
+L S+L++SSTN S+ +S + S+S+SS A +N S S + + ++
Sbjct: 147 SSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSA 206
Query: 170 RSEGGFRKKLQASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTSTSAPLFSLDASRAVVL 229
+ AS A L + S S + S+S PL S +++ A
Sbjct: 207 TATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATS 266
Query: 230 LDRFSNLKGESLEFATGLVEDVLNGKATSDSLLLESHGQSANKEDLISVKEFIYRQSDIL 289
S+ S ++ T + +T S + SA+ L SV
Sbjct: 267 ASATSS----SAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSV----------- 311
Query: 290 RGRGGIVNSNSGSAAGVGMVAVAAAAAAASAASGKTFTTP 329
NS + +++ ++A S + T +TP
Sbjct: 312 ---------NSTTTTSASSTPLSSVSSANSTTATSTSSTP 342
Score = 32.3 bits (72), Expect = 6.3
Identities = 38/160 (23%), Positives = 65/160 (39%), Gaps = 3/160 (1%)
Query: 57 SRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIPVTLFVF 116
S + SSL+S T+S++ +S S + ++ SL S + +SL T
Sbjct: 113 SATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATP 172
Query: 117 VDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVSGSVVMLARPASRSEGGFR 176
++ S SST S+ SSL+ S+ S+ + + +S + A ++ S
Sbjct: 173 TSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTA---ASNSATSSSLAS 229
Query: 177 KKLQASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTSTSA 216
L ++ A S + +T S T TS SA
Sbjct: 230 SSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASA 269
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein
C19G12.16c in chromosome I precursor
Length = 670
Score = 37.0 bits (84), Expect = 0.26
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 16/178 (8%)
Query: 51 TMPPLPSRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIP 110
T+PP S + S + TS +SS G+ N S+ L S + S ASL +P
Sbjct: 188 TLPPPASSTSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSF-LPSSVISSASLSSSSVLP 246
Query: 111 VTLFVFVDDFSNLSNSSTNG---EESSDVSSLSQSNSMSSAAKANLPAKVSGSVVMLARP 167
++ +S+SS + S+++++ + + SA ++ P + SV+ + P
Sbjct: 247 TSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSVIPTSVP 306
Query: 168 ASRSEGGFRKKLQASLEAQIRFLIKKCHTLSGSEITHSGVRTG-GTSTSAPLFSLDAS 224
+S S +S + L T S + +T++G TG T TS+P F ++S
Sbjct: 307 SSVS------SFTSSSSSYTTTL-----TASNTSVTYTGTGTGSATFTSSPPFYSNSS 353
>SER2_GALME (O96615) Sericin-2 (Silk gum protein 2) (Fragment)
Length = 220
Score = 37.0 bits (84), Expect = 0.26
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 21/170 (12%)
Query: 57 SRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIPVTLFVF 116
SR++SS SS S+NNSS G G + + S S SG+GS +
Sbjct: 47 SRNNSSGSS----SSNNSSSGSSAGNSSGSSSSNSSGSSGIGSLSR-------------- 88
Query: 117 VDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVSGSVVMLARPASRSEGGFR 176
+ S+ S+S G SS S S+S SSA+ + + S + S +E
Sbjct: 89 --NSSSSSSSQAAGSSSSRRVSADGSSSSSSASNSAAAQNSASSSETINADGSENESS-S 145
Query: 177 KKLQASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTSTSAPLFSLDASRA 226
A+ + R + S + S ++TS+ S D S +
Sbjct: 146 SSSSAAQNSATRSQVINADGSQSSSSSSSSASNQASATSSSSVSADGSES 195
>PYGO_DROME (Q9V9W8) Pygopus protein (Gammy legs protein)
Length = 815
Score = 37.0 bits (84), Expect = 0.26
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 65 SRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQ---CIPVTLFVFVDDFS 121
+ P S NN G GGGN + NGS S S L P +P ++ S
Sbjct: 388 NNPGGSGNNMLGGNPGGGNSNNNGSNTSNASNNNQNPHLSPAAGRLGVPTSMQSNGPSVS 447
Query: 122 NLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPA 155
++++SS + ++ S + SMS++ + PA
Sbjct: 448 SVASSSVPSPATPTLTPTSTATSMSTSVPTSSPA 481
>PCLO_CHICK (Q9PU36) Piccolo protein (Aczonin) (Fragment)
Length = 5120
Score = 37.0 bits (84), Expect = 0.26
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 8/122 (6%)
Query: 811 HLNELGSSYSLLEESCISSSMEPAS--INQAYHSRVSKNASWAKV-----HQSSNEIPPA 863
HL + G++ + E + ++P + Q+ H+R S A V QS N PPA
Sbjct: 4827 HLEDAGAAIAAAEAAVQQLRLQPTAHKSGQSNHARKQHRHSIAGVLPIQRTQSDNLPPPA 4886
Query: 864 STNKERDADKSNEMMPNGDLNSDGLLYTSIPLKEQNLTSGNALAK-TQNLMKDSGGDLQA 922
+ NK++ ++M +G + +G T+ E ++++G++++ DS G A
Sbjct: 4887 NDNKDQSQLALRKVMSDGPVKPEGARSTNHRPAESSVSTGSSVSSFGSGYSMDSEGSSSA 4946
Query: 923 IG 924
G
Sbjct: 4947 TG 4948
>1A1A_ARATH (Q9LQ10) Probable aminotransferase ACS10 (EC 2.6.1.-)
Length = 557
Score = 37.0 bits (84), Expect = 0.26
Identities = 26/84 (30%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Query: 65 SRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIPVTLFVFVDDF--SN 122
SR ++S ++ + G GGG + + L + LF G IP F F+ + N
Sbjct: 9 SRSSNSDSDKNSGNVGGGRTTGMRVIVPLQGVVQGRGGLFLGSVIPCAFFYFLQFYLKRN 68
Query: 123 LSN--SSTNGEESSDVSSLSQSNS 144
N S +GE++S SS S NS
Sbjct: 69 RKNDESDNSGEQNSSASSSSSPNS 92
>NK61_RAT (O35762) Homeobox protein Nkx-6.1
Length = 365
Score = 36.6 bits (83), Expect = 0.34
Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 38 AAKHAMAPFAKS---QTMPPLPSRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLM 94
AA H+MA PPLP+ SS SS +SS+++ SP G A +
Sbjct: 23 AALHSMAEMKTPLYPAAYPPLPTGPPSSSSS--SSSSSSPSPPLGAHNPGGLKPPAAGGL 80
Query: 95 SGLGSYASLFPGQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLP 154
S LGS P Q T D S S +G S S+S SS+A A
Sbjct: 81 SSLGSP----PQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSA 136
Query: 155 AKVSGSVVMLARPASRSEGG 174
+ + + A A+ S G
Sbjct: 137 SAAAAAAAAAAAAAASSPAG 156
Score = 32.0 bits (71), Expect = 8.3
Identities = 18/38 (47%), Positives = 21/38 (54%)
Query: 297 NSNSGSAAGVGMVAVAAAAAAASAASGKTFTTPDLPNF 334
+S+S SA A AAAAAAA+AAS LP F
Sbjct: 127 SSSSASATSASAAAAAAAAAAAAAASSPAGLLAGLPRF 164
>NK61_MOUSE (Q99MA9) Homeobox protein Nkx-6.1
Length = 365
Score = 36.6 bits (83), Expect = 0.34
Identities = 41/140 (29%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 38 AAKHAMAPFAKS---QTMPPLPSRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLM 94
AA H+MA PPLP+ SS SS +SS+++ SP G A +
Sbjct: 23 AALHSMAEMKTPLYPAAYPPLPTGPPSSSSS--SSSSSSPSPPLGSHNPGGLKPPAAGGL 80
Query: 95 SGLGSYASLFPGQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLP 154
S LGS P Q T D S S +G S S+S SS+A A
Sbjct: 81 SSLGSP----PQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSA 136
Query: 155 AKVSGSVVMLARPASRSEGG 174
+ + + A A+ S G
Sbjct: 137 SAAAAAAAAAAAAAASSPAG 156
Score = 32.0 bits (71), Expect = 8.3
Identities = 18/38 (47%), Positives = 21/38 (54%)
Query: 297 NSNSGSAAGVGMVAVAAAAAAASAASGKTFTTPDLPNF 334
+S+S SA A AAAAAAA+AAS LP F
Sbjct: 127 SSSSASATSASAAAAAAAAAAAAAASSPAGLLAGLPRF 164
>RN12_HUMAN (Q9NVW2) RING finger protein 12 (LIM domain interacting
RING finger protein) (RING finger LIM domain-binding
protein) (R-LIM) (NY-REN-43 antigen)
Length = 624
Score = 36.2 bits (82), Expect = 0.44
Identities = 33/108 (30%), Positives = 49/108 (44%), Gaps = 24/108 (22%)
Query: 60 HSSLSSRPTSSANN-------SSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIPVT 112
+S S PT S +N S GRGG G S +GS+ S S S +S
Sbjct: 421 YSDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSS---------- 470
Query: 113 LFVFVDDFSNLSNSSTNGEESSDVSS-LSQSNSMSSAAKANLPAKVSG 159
S+ S SS++G ESS+ SS L + ++ S++ + A+ G
Sbjct: 471 ------SSSSSSPSSSSGGESSETSSDLFEGSNEGSSSSGSSGARREG 512
>YTFQ_ECOLI (P39325) ABC transporter periplasmic binding protein
ytfQ precursor
Length = 318
Score = 35.8 bits (81), Expect = 0.57
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 222 DASRAVVLLDRFSNLKGESLEFATGLVEDVLNGKATSDSLLLESHGQSANKEDL 275
DA V LLDR ++K +SL T +++L GK D L+ E +G+ N +L
Sbjct: 102 DAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVEL 155
>YIQ9_YEAST (P40442) Hypothetical 99.7 kDa protein in SDL1 5'region
precursor
Length = 995
Score = 35.8 bits (81), Expect = 0.57
Identities = 65/304 (21%), Positives = 123/304 (40%), Gaps = 27/304 (8%)
Query: 42 AMAPFAKSQTMPPLPSRSHSSLSSRPTSSANNSSPGRGGGGNVSR-NGSAMSLMSGLGSY 100
A+A +++S + + S +S TS ++SS +++ + SA ++S +
Sbjct: 13 ALALYSQSALGQYYSNSTSISSNSSSTSVVSSSSGSVSISSSIAETSSSATDILSSITQS 72
Query: 101 ASLFPGQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVSGS 160
AS G + V S+ SS+ + SS VS +S S S SS++ +++ + VS S
Sbjct: 73 ASSTSG------VSSSVGPSSSSVVSSSVSQSSSSVSDVSSSVSQSSSSASDVSSSVSQS 126
Query: 161 ------VVMLARPASRSEGGFRKKLQASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTST 214
V +S S + S + + S + S V +ST
Sbjct: 127 ASSTSDVSSSVSQSSSSASDVSSSVSQSSSSASDVSSSVSQSASSASDVSSSVSQSASST 186
Query: 215 SAPLFSLDASRAVVLLDRFSNLKGESLEFATGLVEDV---LNGKATSDSLLLESHGQSAN 271
S D S +V ++ S+ ++ DV ++ A+S S + S QSA+
Sbjct: 187 S------DVSSSVSQSSSSASDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSAS 240
Query: 272 KEDLISVK-----EFIYRQSDILRGRGGIVNSNSGSAAGVGMVAVAAAAAAASAASGKTF 326
+S S ++ SGSA + ++ ++A++ASA + +
Sbjct: 241 STSGVSSSGSQSVSSASGSSSSFPQSTSSASTASGSATSNSLSSITSSASSASATASNSL 300
Query: 327 TTPD 330
++ D
Sbjct: 301 SSSD 304
Score = 35.0 bits (79), Expect = 0.98
Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 120 FSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVSGSVVMLARPASRSEGGFRKKL 179
+SN ++ S+N +S VSS S S S+SS+ A + + + + + AS + G +
Sbjct: 26 YSNSTSISSNSSSTSVVSSSSGSVSISSSI-AETSSSATDILSSITQSASSTSG-----V 79
Query: 180 QASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTSTSAPLFSLDASRAVVLLDRFSNLKGE 239
+S+ ++ + S S ++ +S+SA S S++ S+ +
Sbjct: 80 SSSVGPSSSSVVSSSVSQSSSSVSDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQ 139
Query: 240 SLEFATGLVEDVLNGKATSDSLLLESHGQSANKEDLI--SVKEFIYRQSDILRGRGGIVN 297
S A+ V ++ ++S S + S QSA+ + SV + SD+ V+
Sbjct: 140 SSSSASD-VSSSVSQSSSSASDVSSSVSQSASSASDVSSSVSQSASSTSDV----SSSVS 194
Query: 298 SNSGSAAGVGMVAVAAAAAA---ASAASGKTFTTPDLPNFEIWSSSS 341
+S SA+ V ++++A +S+ S +T D+ + S+SS
Sbjct: 195 QSSSSASDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSASS 241
>VIT2_CHICK (P02845) Vitellogenin II precursor (Major vitellogenin)
[Contains: Lipovitellin I (LVI); Phosvitin (PV);
Lipovitellin II (LVII); YGP40]
Length = 1850
Score = 35.8 bits (81), Expect = 0.57
Identities = 34/118 (28%), Positives = 52/118 (43%), Gaps = 19/118 (16%)
Query: 61 SSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIPVTLFVFVDDF 120
+S SSR + S+N+S N S+ S+ S S S +S
Sbjct: 1166 ASSSSRSSKSSNSSKRSSSKSSNSSKRSSSSSSSSSSSSRSS------------------ 1207
Query: 121 SNLSNSSTNGEESSDVSSLSQSNSMS-SAAKANLPAKVSGSVVMLARPASRSEGGFRK 177
S+ S+SS+N + SS S S S+S S S++K++ + S S +SRS K
Sbjct: 1208 SSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRSSSSSSK 1265
>NK61_MESAU (Q60554) Homeobox protein Nkx-6.1
Length = 364
Score = 35.8 bits (81), Expect = 0.57
Identities = 42/140 (30%), Positives = 56/140 (40%), Gaps = 10/140 (7%)
Query: 38 AAKHAMAPFAKS---QTMPPLPSRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAMSLM 94
AA H+MA T PPLP+ SS SS SS+++ SP G + G
Sbjct: 23 AALHSMAEMKTPLYPATYPPLPTGPPSSSSS---SSSSSPSPPLGAH---NPGGLKPPAA 76
Query: 95 SGLGSYASLFPGQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLP 154
GL S +S P Q T D S S +G S S+S SS+A A
Sbjct: 77 GGLSSLSSP-PQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASATSA 135
Query: 155 AKVSGSVVMLARPASRSEGG 174
+ + + A A+ S G
Sbjct: 136 SAAAAAAAAAAAAAASSPAG 155
Score = 32.0 bits (71), Expect = 8.3
Identities = 18/38 (47%), Positives = 21/38 (54%)
Query: 297 NSNSGSAAGVGMVAVAAAAAAASAASGKTFTTPDLPNF 334
+S+S SA A AAAAAAA+AAS LP F
Sbjct: 126 SSSSASATSASAAAAAAAAAAAAAASSPAGLLAGLPRF 163
>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 in
chromosome II precursor
Length = 317
Score = 35.4 bits (80), Expect = 0.75
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 47 AKSQTMPPLPSRSHSSLSSRPTSSANNSSPGRGGGGNVSRNGSAM----SLMSGLGSYAS 102
+KS + S+S SS SS SS+++SS + S S+ S ++ +S
Sbjct: 176 SKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASS 235
Query: 103 LFPGQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVSGSVV 162
G + DD S+ S+++ SS S +S ++S SA+ ++ A VS S
Sbjct: 236 SSSGAIVSNAKTASTDDSSSASSAT-----SSVSSVVSSASSALSASASSASASVSSSAS 290
Query: 163 MLARPASRS 171
A PA ++
Sbjct: 291 SDASPALKT 299
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A
intergenic region
Length = 551
Score = 35.0 bits (79), Expect = 0.98
Identities = 48/235 (20%), Positives = 96/235 (40%), Gaps = 11/235 (4%)
Query: 99 SYASLFPGQCIPVTLFVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVS 158
S ASL V+ F S L+ SST E S S S+S SS++ + S
Sbjct: 69 SSASLSTPSIASVSFTSFPQSSSLLTLSSTLSSELSSSSMQVSSSSTSSSSSEVTSSSSS 128
Query: 159 GSVVMLARPASRSEGGFRKKLQASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTSTSAPL 218
S+ P+S S + +S + T++ S ++ S TS+S
Sbjct: 129 SSI----SPSSSSS----TIISSSSSLPTFTVASTSSTVASSTLSTSSSLVISTSSSTFT 180
Query: 219 FSLDASRAVVLLDRFSNLKGESLEFATGLVEDVLNGKATSDSLLLESHGQSANKEDLISV 278
FS ++S +++ +++ S+ + + ++S L S+ S++ L S
Sbjct: 181 FSSESSSSLISSSISTSVSTSSVYVPS---SSTSSPPSSSSELTSSSYSSSSSSSTLFSY 237
Query: 279 KEFIYRQSDILRGRGGIVNSNSGSAAGVGMVAVAAAAAAASAASGKTFTTPDLPN 333
S +S+S S++ ++ +++++ S++S +F++ N
Sbjct: 238 SSSFSSSSSSSSSSSSSSSSSSSSSSSYFTLSTSSSSSIYSSSSYPSFSSSSSSN 292
>Y4SI_RHISN (P55652) Probable chemoreceptor Y4SI (Methyl-accepting
chemotaxis protein)
Length = 756
Score = 35.0 bits (79), Expect = 0.98
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 226 AVVLLDRFSN---LKGESLEFATGLVEDVLNGKATSDSL-------LLESHGQSANKEDL 275
AV +D SN + + A LV D + A SD + +LE SA +
Sbjct: 523 AVNTMDAISNDVSVTANAANNADALVRDAHSAAAASDEIVSSAIAGMLEIEESSAKIATI 582
Query: 276 ISVKEFIYRQSDILRGRGGIVNSNSGSAAGVGMVAVAAAAAAASAAS 322
+SV E I Q+++L G+ S +G AG G VA+ A + S
Sbjct: 583 VSVIEEIAHQTNLLALNAGVEASRAGE-AGKGFAVVASEVRALAQRS 628
>FX41_MOUSE (Q6NS60) F-box only protein 41
Length = 873
Score = 34.7 bits (78), Expect = 1.3
Identities = 43/170 (25%), Positives = 70/170 (40%), Gaps = 12/170 (7%)
Query: 20 QEGSRFDTRVLRNFRVLQ--AAKHAMAPFAKSQTMPPLPSRSHSS-----LSSRPTSSAN 72
QE SR V++ + L+ AA+ A A Q + L R+ + + S S
Sbjct: 293 QELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTP 352
Query: 73 NSSPGRGGGGNVSRNGSAMSLMSGLGSYASLFPGQCIPVTLFVFVDDFSNLSNSSTNGEE 132
++S GRGGGG+ S G + G G G +P T V S + +S+
Sbjct: 353 SASLGRGGGGSASGPG-----VRGPGRMREHHAGSAVPSTYAVSRHGSSPSTGASSRVPA 407
Query: 133 SSDVSSLSQSNSMSSAAKANLPAKVSGSVVMLARPASRSEGGFRKKLQAS 182
+S S S+S+ P++ SG + +R + + G R + S
Sbjct: 408 ASQSSGCYDSDSLELPRPEEGPSEDSGPGGLGSRAQATNGGSERSQAPRS 457
>CDSN_HUMAN (Q15517) Corneodesmosin precursor (S protein)
Length = 486
Score = 34.7 bits (78), Expect = 1.3
Identities = 44/163 (26%), Positives = 63/163 (37%), Gaps = 19/163 (11%)
Query: 57 SRSHSSLSSRPTSSANNSSPGRGG---GGNVSRNGSAMSLMSGLGSYASLFPGQCIPVTL 113
S S SS S SSA +S G G G ++++ GSA S G G Y+ +
Sbjct: 51 SYSGSSSSGSSISSARSSGGGSSGSSSGSSIAQGGSAGSFKPGTG-YSQV---------- 99
Query: 114 FVFVDDFSNLSNSSTNGEESSDVSSLSQSNSMSSAAKANLPAKVSGSVVMLARPASRSEG 173
+S+ S SS G S S S+S SS + + + S S +S +
Sbjct: 100 -----SYSSGSGSSLQGASGSSQLGSSSSHSGSSGSHSGSSSSHSSSSSSFQFSSSSFQV 154
Query: 174 GFRKKLQASLEAQIRFLIKKCHTLSGSEITHSGVRTGGTSTSA 216
G L + + L S S SGV + G S S+
Sbjct: 155 GNGSALPTNDNSYRGILNPSQPGQSSSSSQTSGVSSSGQSVSS 197
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,639,701
Number of Sequences: 164201
Number of extensions: 4993554
Number of successful extensions: 14723
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 14537
Number of HSP's gapped (non-prelim): 204
length of query: 975
length of database: 59,974,054
effective HSP length: 120
effective length of query: 855
effective length of database: 40,269,934
effective search space: 34430793570
effective search space used: 34430793570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 71 (32.0 bits)
Lotus: description of TM0369c.3