BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0369c.1
         (573 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog               34  0.90
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog               31  10.0

>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
          Length = 1259

 Score = 34.3 bits (77), Expect = 0.90
 Identities = 29/108 (26%), Positives = 54/108 (49%), Gaps = 7/108 (6%)

Query: 1   ICITKEGIGISHLFCVDGVLLFFPVSN*QLQLITQTLKEFFEASGMKVNLQKSRMFCSNV 60
           I + KE + +S LF  D ++++        Q + + +  F + SG K+N+QKS+ F    
Sbjct: 687 IQLGKEEVKLS-LFA-DDMIVYLENPIVSAQNLLKLISNFSKVSGYKINVQKSQAFLYTN 744

Query: 61  VDQRKQQ---ELSIIVGITRASYLGKYLDLPQLKARVTKEHFAPIIDK 105
             Q + Q   EL   +   R  YLG  + L +    + KE++ P++++
Sbjct: 745 NRQTESQIMSELPFTIASKRIKYLG--IQLTRDVKDLFKENYKPLLNE 790


>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
          Length = 1260

 Score = 30.8 bits (68), Expect = 10.0
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 17  DGVLLFFPVSN*QLQLITQTLKEFFEASGMKVNLQKSRMFC---SNVVDQRKQQELSIIV 73
           D ++++   +      + + +KE+   SG K+N  KS  F    +N  ++  +  +   V
Sbjct: 701 DDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSIPFTV 760

Query: 74  GITRASYLGKYL-----DLPQLKARVTKEHFAPIIDKGN----SHLGRIS 114
              +  YLG YL     DL +      ++  A  ++K      S LGRI+
Sbjct: 761 VPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRIN 810


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.339    0.147    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,852,403
Number of Sequences: 164201
Number of extensions: 2338308
Number of successful extensions: 5536
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5536
Number of HSP's gapped (non-prelim): 2
length of query: 573
length of database: 59,974,054
effective HSP length: 116
effective length of query: 457
effective length of database: 40,926,738
effective search space: 18703519266
effective search space used: 18703519266
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 68 (30.8 bits)