BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0368b.6
         (480 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

YMFP_ECOLI (P75981) Hypothetical protein ymfP in lambdoid propha...    32  4.7
DPOL_ADECC (Q65946) DNA polymerase (EC 2.7.7.7)                        32  4.7
YN53_YEAST (P42842) Hypothetical 102.3 kDa protein in DAL82-RFA2...    31  6.2
PSAB_GUITH (O78507) Photosystem I P700 chlorophyll A apoprotein ...    31  6.2

>YMFP_ECOLI (P75981) Hypothetical protein ymfP in lambdoid prophage
           e14 region
          Length = 263

 Score = 31.6 bits (70), Expect = 4.7
 Identities = 21/62 (33%), Positives = 30/62 (47%), Gaps = 7/62 (11%)

Query: 320 YFMQW----DGLRSTSGSSVWRGSS*QLWPLDRRLLSSSGYFKPLTC---GAMGNSHGGR 372
           ++M+W    DGL+ T+GS + R    Q    D    S      P+ C   GA+GN+  G 
Sbjct: 2   WYMRWEGVSDGLKVTAGSVIQRDDLVQYTTTDDATSSGGVLRVPIACSSAGAVGNADDGT 61

Query: 373 AL 374
           AL
Sbjct: 62  AL 63


>DPOL_ADECC (Q65946) DNA polymerase (EC 2.7.7.7)
          Length = 1149

 Score = 31.6 bits (70), Expect = 4.7
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 21/126 (16%)

Query: 108 VFQEIMESLPRHLSSAPGLPVWGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWKG 167
           +F E   S+ +  SS P LP    T +   S +SA    T  I  T          +++G
Sbjct: 12  LFTEPPNSINQQESSGPSLPAQDATQA---SASSARAGATPAINSTKR--------KYRG 60

Query: 168 APCVK---MFLWKVLNNGLMVNVKRVHNHLADSDLCPLCGTLSESVIHALRDCPMVKPVR 224
           A   +   + +  +L+NG  V +K  H++LA S L  LC T     ++ L  C + KP+ 
Sbjct: 61  AVVAQRATLSISAILDNGQCVQIK-YHSNLA-SALTNLCNT----NLYDLPAC-LNKPIT 113

Query: 225 LANLPT 230
           + NLPT
Sbjct: 114 VHNLPT 119


>YN53_YEAST (P42842) Hypothetical 102.3 kDa protein in DAL82-RFA2
           intergenic region
          Length = 904

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 21/71 (29%), Positives = 28/71 (38%), Gaps = 4/71 (5%)

Query: 111 EIMESLPRHLSSAPGLPV----WGRTTSGINSTASAYELLTENIEDTGPDPMWCLLWRWK 166
           E  E   R +S  P L V    W  T        +AYE L E     GP  + C  W++K
Sbjct: 813 ECHEKAYRAISHNPDLEVEEKVWNDTVDACEDLVAAYESLGEMEGKYGPGSLVCKDWKYK 872

Query: 167 GAPCVKMFLWK 177
               +K  + K
Sbjct: 873 CRSTIKALMSK 883


>PSAB_GUITH (O78507) Photosystem I P700 chlorophyll A apoprotein A2
           (PsaB) (PSI-B)
          Length = 734

 Score = 31.2 bits (69), Expect = 6.2
 Identities = 14/47 (29%), Positives = 28/47 (58%), Gaps = 1/47 (2%)

Query: 4   HVLRHKYGCGNNVMSIV-SHRASESSIWNGVRNTWESFSCGIRWQIG 49
           H+ R  +G G+++  I+ +HRA    + NG +  +E+ S  + +Q+G
Sbjct: 289 HMYRTNWGIGHSLKEILDAHRAPSGRLGNGHKGLFETISNSLHFQLG 335


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.334    0.143    0.505 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,190,689
Number of Sequences: 164201
Number of extensions: 2183525
Number of successful extensions: 7273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7273
Number of HSP's gapped (non-prelim): 4
length of query: 480
length of database: 59,974,054
effective HSP length: 114
effective length of query: 366
effective length of database: 41,255,140
effective search space: 15099381240
effective search space used: 15099381240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 68 (30.8 bits)