BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0360.7
(485 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC 6.3.2... 57 1e-07
AMF2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform ... 57 1e-07
PEXA_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10) 56 2e-07
PEXA_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) 52 4e-06
RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (... 51 6e-06
PEXA_PICAN (Q00940) Peroxisome assembly protein PER8 (Peroxin-10) 50 1e-05
RNF8_MOUSE (Q8VC56) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (... 50 2e-05
RN23_MOUSE (Q9ESN2) RING finger protein 23 (Testis-abundant fing... 49 2e-05
RN23_HUMAN (Q9HCM9) RING finger protein 23 (Testis-abundant fing... 49 2e-05
CHFR_MOUSE (Q810L3) Ubiquitin ligase protein CHFR (EC 6.3.2.-) (... 49 2e-05
CHFR_HUMAN (Q96EP1) Ubiquitin ligase protein CHFR (EC 6.3.2.-) (... 49 2e-05
PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10) ... 46 2e-04
ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V... 46 2e-04
SAN1_YEAST (P22470) SAN1 protein 46 2e-04
RH18_SCHPO (O74747) Postreplication repair protein rhp18 (RAD18 ... 45 3e-04
PEXA_YEAST (Q05568) Peroxisome assembly protein PEX10 (Peroxin-10) 45 4e-04
UVS2_NEUCR (P33288) Postreplication repair protein uvs-2 45 5e-04
RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a 44 7e-04
ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (I... 44 7e-04
Z18L_HUMAN (Q8IZP6) Zinc finger protein 183-like 1 44 0.001
>AMFR_MOUSE (Q9R049) Autocrine motility factor receptor (EC
6.3.2.19) (AMF receptor)
Length = 643
Score = 56.6 bits (135), Expect = 1e-07
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 307 VLVRQAAMVFKCFLLIYYKNGKGHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRD 366
V VR A ++ + + ++ N +G + + + ++++ L L + L +
Sbjct: 226 VTVRTAHVILRYVIHLWDLNHEG-TWEGKGTYVYYTDFVMELALLSLDLMHHIHMLLFGN 284
Query: 367 YGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKALSRKDVHYGVYATMEQVNAAGDLCAI 426
+SL + L + + ++R + + + + + V AT E++ D CAI
Sbjct: 285 IWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAV-ATPEELAVNNDDCAI 343
Query: 427 CQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD 469
C + M + L C H+F C+ W E++ +CP CR + AD
Sbjct: 344 CWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>AMF2_HUMAN (Q9UKV5) Autocrine motility factor receptor, isoform 2
(EC 6.3.2.-) (AMF receptor) (gp78)
Length = 643
Score = 56.6 bits (135), Expect = 1e-07
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 307 VLVRQAAMVFKCFLLIYYKNGKGHNFRRQAQMLTLVEYMLLLYRALLPTLVWYRFFLNRD 366
V VR A ++ + + ++ N +G + + + ++++ L L + L +
Sbjct: 226 VTVRTAHVILRYVIHLWDLNHEG-TWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGN 284
Query: 367 YGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKALSRKDVHYGVYATMEQVNAAGDLCAI 426
+SL + L + + ++R + + + + + V AT E++ D CAI
Sbjct: 285 IWLSMASLVIFMQLRYLFHEVQRRIRRHKNYLRVVGNMEARFAV-ATPEELAVNNDDCAI 343
Query: 427 CQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPAD 469
C + M + L C H+F C+ W E++ +CP CR + AD
Sbjct: 344 CWDSMQAARKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIAD 386
>PEXA_SCHPO (Q9UUF0) Peroxisome assembly protein 10 (Peroxin-10)
Length = 306
Score = 55.8 bits (133), Expect = 2e-07
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADL 470
C++C E +H P C HIFC C++ W ++ CPLCRA P+ +
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKI 302
>PEXA_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10)
Length = 326
Score = 51.6 bits (122), Expect = 4e-06
Identities = 20/56 (35%), Positives = 28/56 (49%)
Query: 415 EQVNAAGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADL 470
E+ + LC +C E+ P C H+FC EC++ W + CPLCR P L
Sbjct: 264 ERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKL 319
>RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-)
(RING finger protein 8)
Length = 485
Score = 51.2 bits (121), Expect = 6e-06
Identities = 19/43 (44%), Positives = 25/43 (57%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVK 466
C IC E V L C H FC C++EW +R+ CP+CR +K
Sbjct: 403 CIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 445
>PEXA_PICAN (Q00940) Peroxisome assembly protein PER8 (Peroxin-10)
Length = 295
Score = 50.4 bits (119), Expect = 1e-05
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 420 AGDLCAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADL 470
A C +C M P C H+FC +CV +W + + CPLCRA ++ + L
Sbjct: 241 ASRTCMLCLSPMKDPSCGECGHVFCWKCVLDWVKERQECPLCRAKMRESQL 291
>RNF8_MOUSE (Q8VC56) Ubiquitin ligase protein RNF8 (EC 6.3.2.-)
(RING finger protein 8) (AIP37) (ActA-interacting
protein 37) (LaXp180)
Length = 488
Score = 49.7 bits (117), Expect = 2e-05
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCR 462
C IC E V L C H FC C++EW +R+ CP+CR
Sbjct: 406 CIICSEYFIEAVTLNCAHSFCSFCINEWMKRKVECPICR 444
>RN23_MOUSE (Q9ESN2) RING finger protein 23 (Testis-abundant finger
protein) (Tripartite motif-containing protein 39)
Length = 488
Score = 49.3 bits (116), Expect = 2e-05
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWF---ERERTCPLCR 462
C++C E + PV++ C H FC+ C++ W+ ER+ CP+CR
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>RN23_HUMAN (Q9HCM9) RING finger protein 23 (Testis-abundant finger
protein) (Tripartite motif-containing protein 39)
Length = 518
Score = 49.3 bits (116), Expect = 2e-05
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWF---ERERTCPLCR 462
C++C E + PV++ C H FC+ C++ W+ ER+ CP+CR
Sbjct: 29 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCR 70
>CHFR_MOUSE (Q810L3) Ubiquitin ligase protein CHFR (EC 6.3.2.-)
(Checkpoint with forkhead and RING finger domains
protein)
Length = 664
Score = 49.3 bits (116), Expect = 2e-05
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 424 CAICQEKMHSPVLLR-CKHIFCEECVSEWFERERTCPLCRALVK 466
C ICQ+ +H V L+ C H FC C S W ER CP CR V+
Sbjct: 303 CIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVE 346
>CHFR_HUMAN (Q96EP1) Ubiquitin ligase protein CHFR (EC 6.3.2.-)
(Checkpoint with forkhead and RING finger domains
protein)
Length = 664
Score = 49.3 bits (116), Expect = 2e-05
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 424 CAICQEKMHSPVLLR-CKHIFCEECVSEWFERERTCPLCRALVK 466
C ICQ+ +H V L+ C H FC C S W ER CP CR V+
Sbjct: 304 CIICQDLLHDCVSLQPCMHTFCAACYSGWMERSSLCPTCRCPVE 347
>PEXA_ARATH (Q9SYU4) Peroxisome assembly protein 10 (Peroxin-10)
(AthPEX10) (Pex10p) (PER8)
Length = 381
Score = 46.2 bits (108), Expect = 2e-04
Identities = 15/39 (38%), Positives = 20/39 (50%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCR 462
C +C P C H+FC C+ EW ++ CPLCR
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCIMEWCNEKQECPLCR 365
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0
(VMW118 protein)
Length = 825
Score = 46.2 bits (108), Expect = 2e-04
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 3/67 (4%)
Query: 416 QVNAAGDLCAICQEKMHSPVLLR---CKHIFCEECVSEWFERERTCPLCRALVKPADLQT 472
+ GD+CA+C +++ P+ + C H FC C+ W TCPLC V +
Sbjct: 118 EAGGGGDVCAVCTDEIAPPLRCQSFPCLHPFCIPCMKTWIPLRNTCPLCNTPVAYLIVGV 177
Query: 473 FGDGSTS 479
GS S
Sbjct: 178 TASGSFS 184
>SAN1_YEAST (P22470) SAN1 protein
Length = 610
Score = 45.8 bits (107), Expect = 2e-04
Identities = 17/31 (54%), Positives = 21/31 (66%)
Query: 432 HSPVLLRCKHIFCEECVSEWFERERTCPLCR 462
HSP+ L C HIF EC+ +W E +CPLCR
Sbjct: 250 HSPIKLPCGHIFGRECIYKWSRLENSCPLCR 280
>RH18_SCHPO (O74747) Postreplication repair protein rhp18 (RAD18
homolog)
Length = 387
Score = 45.4 bits (106), Expect = 3e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRA 463
C IC E +P++ C H FC C+ ++ CP CRA
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIRDYLREHPMCPACRA 68
>PEXA_YEAST (Q05568) Peroxisome assembly protein PEX10 (Peroxin-10)
Length = 337
Score = 45.1 bits (105), Expect = 4e-04
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADL 470
C +C M P C H+FC C+ W + CPLCR +P ++
Sbjct: 286 CILCLMNMSDPSCAPCGHLFCWSCLMSWCKERPECPLCRQHCQPQEI 332
>UVS2_NEUCR (P33288) Postreplication repair protein uvs-2
Length = 501
Score = 44.7 bits (104), Expect = 5e-04
Identities = 17/48 (35%), Positives = 26/48 (53%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPADLQ 471
C +C++ SP+L C H FC C+ + CPLCRA + + L+
Sbjct: 34 CHVCKDFYDSPMLTSCNHTFCSLCIRRCLSVDSKCPLCRATDQESKLR 81
>RH4A_ARATH (Q84TF5) RING-H2 zinc finger protein RHA4a
Length = 174
Score = 44.3 bits (103), Expect = 7e-04
Identities = 33/127 (25%), Positives = 55/127 (42%), Gaps = 12/127 (9%)
Query: 356 LVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSIIEKVRGFISAFKALSRKDVHYGVYATME 415
L++Y F+L R SL S L ++ + + K + +H ++ E
Sbjct: 39 LLFYLFYLKRRASSLSSPSPMILPVSSSHQTSSHLPSVCLLDVKVELKDKLHVVLFN--E 96
Query: 416 QVNAAGDLCAIC-------QEKMHSPVLLRCKHIFCEECVSEWFERERTCPLCRALVKPA 468
++ LC +C +E + P+ CKHIF +C+ W TCPLCR+ V +
Sbjct: 97 ELGTRDSLCCVCLGEFELKEELVEMPL---CKHIFHLDCIHLWLYSHNTCPLCRSSVSIS 153
Query: 469 DLQTFGD 475
+T D
Sbjct: 154 STKTSVD 160
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0
(Immediate-early protein IE110) (VMW110) (Alpha-0
protein)
Length = 775
Score = 44.3 bits (103), Expect = 7e-04
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 421 GDLCAICQEKMHSPVL----LRCKHIFCEECVSEWFERERTCPLCRA 463
GD+CA+C +++ +P L C H FC C+ W + TCPLC A
Sbjct: 113 GDVCAVCTDEI-APHLRCDTFPCMHRFCIPCMKTWMQLRNTCPLCNA 158
Score = 30.8 bits (68), Expect = 8.2
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 132 GERRGAGMSPLDDDPEGRGGAAVNETVPLVSSSASLAGSVQGDGDA-AGNGAESDSRGSS 190
G +R A P D P GRG PL SS+AS + S A GA S + G++
Sbjct: 526 GAKRAATHPPSDSGPGGRGQGGPG--TPLTSSAASASSSSASSSSAPTPAGAASSAAGAA 583
Query: 191 S 191
S
Sbjct: 584 S 584
>Z18L_HUMAN (Q8IZP6) Zinc finger protein 183-like 1
Length = 322
Score = 43.9 bits (102), Expect = 0.001
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 424 CAICQEKMHSPVLLRCKHIFCEECVSEWFERERTCPLC 461
C IC++ +PV+ +C+H FCE C E F C +C
Sbjct: 256 CFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYIC 293
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,927,307
Number of Sequences: 164201
Number of extensions: 2556842
Number of successful extensions: 7450
Number of sequences better than 10.0: 273
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 7120
Number of HSP's gapped (non-prelim): 417
length of query: 485
length of database: 59,974,054
effective HSP length: 114
effective length of query: 371
effective length of database: 41,255,140
effective search space: 15305656940
effective search space used: 15305656940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Lotus: description of TM0360.7