BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0358.18
(152 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FWA_ARATH (Q9FVI6) Homeobox protein FWA 47 2e-05
HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine z... 42 7e-04
CH60_BACP3 (P26209) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 32 0.54
CH60_BACSU (P28598) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 30 1.6
YA29_STRPN (Q97R12) Hypothetical RNA methyltransferase SP1029 (E... 30 2.7
Y932_STRR6 (Q8DPY7) Hypothetical RNA methyltransferase spr0932 (... 30 2.7
TNFC_MARMO (Q9JM10) Lymphotoxin-beta (LT-beta) (Tumor necrosis f... 30 2.7
NPP2_RAT (Q64610) Ectonucleotide pyrophosphatase/phosphodiestera... 30 2.7
NPP2_MOUSE (Q9R1E6) Ectonucleotide pyrophosphatase/phosphodieste... 30 2.7
CH60_BACHD (O50305) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 30 2.7
CH60_BACST (Q07201) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 29 3.5
PHK_STRCO (Q8CK51) Probable phosphoketolase (EC 4.1.2.-) 29 4.6
RAMA_ENTCL (P55922) Transcriptional activator ramA 28 6.0
MTB2_METMA (P58974) Trimethylamine methyltransferase mttB2 (EC 2... 28 6.0
CH60_BACTR (Q8VV84) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 28 6.0
CH60_BACAN (Q81VE1) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 28 6.0
U171_DROME (Q9VUB4) Hypothetical UPF0171 protein CG8783 28 7.8
SYR_MYCTU (P67569) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 28 7.8
SYR_MYCBO (P67570) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 28 7.8
RAMA_KLEPN (Q48413) Transcriptional activator ramA 28 7.8
>FWA_ARATH (Q9FVI6) Homeobox protein FWA
Length = 686
Score = 47.0 bits (110), Expect = 2e-05
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 3 CTTCGGLTSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYNQM 62
C CG T+ G+ Y+ Q + ENA L I++ + S LS +M
Sbjct: 130 CNICGKATNCGDTEYEVQKLMAENANLEREIDQFN--------------SRYLSHPKQRM 175
Query: 63 PSSSRAFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLW 122
S+S N G + +L S ++ + I + +A+ A+ EL+ L V P W
Sbjct: 176 VSTSEQAPSSSSNPGINATPVLDFSGGTRTSEKETSIFLNLAITALRELITLGEVDCPFW 235
Query: 123 VL 124
++
Sbjct: 236 MI 237
>HGL2_ARATH (P46607) Homeobox protein GLABRA2 (Homeobox-leucine
zipper protein ATHB-10) (HD-ZIP protein ATHB-10)
Length = 745
Score = 41.6 bits (96), Expect = 7e-04
Identities = 20/53 (37%), Positives = 31/53 (57%)
Query: 96 DKPIIVEVAVAAMEELVRLARVGHPLWVLSNNHNVETLNEEEYVREFPRGTGS 148
+K I E++ A EL ++A G P+W+ S E LN +EY++EFP+ S
Sbjct: 251 EKSRIAEISNRATLELQKMATSGEPMWLRSVETGREILNYDEYLKEFPQAQAS 303
>CH60_BACP3 (P26209) 60 kDa chaperonin (Protein Cpn60) (groEL
protein) (Heat shock 61 kDa protein)
Length = 538
Score = 32.0 bits (71), Expect = 0.54
Identities = 23/97 (23%), Positives = 47/97 (47%), Gaps = 2/97 (2%)
Query: 19 EQLMKLENARLREAIERISGIVA--KYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGNY 76
E + + +L+E + +++G VA K + T + + + S+ A + G+G
Sbjct: 353 ETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIGAG 412
Query: 77 GGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVR 113
GG + + + I A+ D+ V++ + A+EE VR
Sbjct: 413 GGTALMNIHNKVAAIEAEGDEATGVKIVLRAIEEPVR 449
>CH60_BACSU (P28598) 60 kDa chaperonin (Protein Cpn60) (groEL
protein) (Stress protein H5)
Length = 543
Score = 30.4 bits (67), Expect = 1.6
Identities = 29/132 (21%), Positives = 59/132 (43%), Gaps = 5/132 (3%)
Query: 18 DEQLMKLENARLREAIERISGIVA--KYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGN 75
+E + + +L+E + +++G VA K + T + + + S+ A + G+ +
Sbjct: 351 EETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVS 410
Query: 76 YGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLWVLSNNHNVETLNE 135
GG + + + + A+ D + + + A+EE +R ++ H L + VE L
Sbjct: 411 GGGTALVNVYNKVAAVEAEGDAQTGINIVLRALEEPIR--QIAHNAG-LEGSVIVERLKN 467
Query: 136 EEYVREFPRGTG 147
EE F TG
Sbjct: 468 EEIGVGFNAATG 479
>YA29_STRPN (Q97R12) Hypothetical RNA methyltransferase SP1029 (EC
2.1.1.-)
Length = 543
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/106 (21%), Positives = 52/106 (48%), Gaps = 6/106 (5%)
Query: 8 GLTSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSR 67
G+ LG +SY EQL K + ++++++ +I+GI ++ + +N Q+P
Sbjct: 79 GIADLGHLSYPEQL-KFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRV 137
Query: 68 AFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVR 113
L G + + ++L+ P+ + +++ V A+ +L+R
Sbjct: 138 NGVLETGFFRKNSHNLM-----PLEDFFIQDPVIDQVVVALRDLLR 178
>Y932_STRR6 (Q8DPY7) Hypothetical RNA methyltransferase spr0932 (EC
2.1.1.-)
Length = 543
Score = 29.6 bits (65), Expect = 2.7
Identities = 23/106 (21%), Positives = 52/106 (48%), Gaps = 6/106 (5%)
Query: 8 GLTSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSR 67
G+ LG +SY EQL K + ++++++ +I+GI ++ + +N Q+P
Sbjct: 79 GIADLGHLSYPEQL-KFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRV 137
Query: 68 AFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVR 113
L G + + ++L+ P+ + +++ V A+ +L+R
Sbjct: 138 NGVLETGFFRKNSHNLM-----PLEDFFIQDPVIDQVVVALRDLLR 178
>TNFC_MARMO (Q9JM10) Lymphotoxin-beta (LT-beta) (Tumor necrosis
factor C) (TNF-C) (Tumor necrosis factor ligand
superfamily member 3)
Length = 310
Score = 29.6 bits (65), Expect = 2.7
Identities = 29/121 (23%), Positives = 51/121 (41%), Gaps = 9/121 (7%)
Query: 38 GIVAKYAGKSTTSYSSLLSQN------YNQMPSSSRAFDLGVGNYGGDGNDLLRSSLPPI 91
G+V + AG + L N ++Q+PSSS+ L G G ++LPPI
Sbjct: 53 GLVMESAGLGAQAQQGLSKSNGLPSRLHSQIPSSSKNPFLRPGALSSHGKHPWVATLPPI 112
Query: 92 LADADKPIIVEVAVAAME-ELVRLARVGHPL--WVLSNNHNVETLNEEEYVREFPRGTGS 148
+A P ++ E +L H + W+ + E EE ++R + +G+
Sbjct: 113 VASTPVPGFQQLQEEKPETDLSSRLPAAHLIGAWMKGQGLSWEAKKEEAFLRSGTQFSGA 172
Query: 149 K 149
+
Sbjct: 173 E 173
>NPP2_RAT (Q64610) Ectonucleotide pyrophosphatase/phosphodiesterase
2 (E-NPP 2) (Phosphodiesterase I/nucleotide
pyrophosphatase 2) (Phosphodiesterase I alpha)
(PD-Ialpha) [Includes: Alkaline phosphodiesterase I (EC
3.1.4.1); Nucleotide pyrophosphatase (EC
Length = 885
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 10 TSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLS 56
+S E + E+LMK+ AR+R+ IE ++G+ + K++ SYS +L+
Sbjct: 830 SSEDESKWVEELMKMHTARVRD-IEHLTGL--DFYRKTSRSYSEILT 873
>NPP2_MOUSE (Q9R1E6) Ectonucleotide
pyrophosphatase/phosphodiesterase 2 (E-NPP 2)
(Phosphodiesterase I/nucleotide pyrophosphatase 2)
(Phosphodiesterase I alpha) (PD-Ialpha) [Includes:
Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
pyrophosphatase (
Length = 862
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Query: 10 TSLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLS 56
+S E + E+LMK+ AR+R+ IE ++G+ + K++ SYS +L+
Sbjct: 807 SSEDESKWVEELMKMHTARVRD-IEHLTGL--DFYRKTSRSYSEILT 850
>CH60_BACHD (O50305) 60 kDa chaperonin (Protein Cpn60) (groEL
protein)
Length = 544
Score = 29.6 bits (65), Expect = 2.7
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 18 DEQLMKLENARLREAIERISGIVA--KYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGN 75
+E + +L+E + +++G VA K + T + + + S+ A + G+
Sbjct: 352 EETTSDFDKEKLQERLAKLAGGVAVLKVGAATETEMKERKLRIEDALNSTRAAVEEGIVA 411
Query: 76 YGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLWVLSNNHNVETLNE 135
GG + ++ I A+ D+ V + + A+EE VR ++ H L + VE L +
Sbjct: 412 GGGTALVNVIKAVSSIGAEGDEATGVNIVLRALEEPVR--QIAHNAG-LEGSVIVERLKK 468
Query: 136 EEYVREFPRGTG 147
EE F TG
Sbjct: 469 EEAGFGFNAATG 480
>CH60_BACST (Q07201) 60 kDa chaperonin (Protein Cpn60) (groEL
protein)
Length = 539
Score = 29.3 bits (64), Expect = 3.5
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 18 DEQLMKLENARLREAIERISGIVA--KYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGN 75
+E + + +L+E + +++G VA K + T + + + S+ A + G+
Sbjct: 352 EETTSEFDREKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVA 411
Query: 76 YGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVR 113
GG + S + I A+ D+ V++ + A+EE VR
Sbjct: 412 GGGTALMNVYSKVAAIEAEGDEATGVKIVLRAIEEPVR 449
>PHK_STRCO (Q8CK51) Probable phosphoketolase (EC 4.1.2.-)
Length = 817
Score = 28.9 bits (63), Expect = 4.6
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 49 TSYSSLLSQNYNQMPSSSRAFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAM 108
T ++ L + Y ++ +++ FD+ V GNDL R L ++ D+ + V AA+
Sbjct: 732 TGHAHLHVRGYKEIGTTTTPFDMVV------GNDLDRYRL--VMDVIDRVPGLAVRAAAV 783
Query: 109 EELVRLARVGHPLWVLSNNHNVETLNEEEYVREFPR 144
+ + AR H W+ H V+ ++ E PR
Sbjct: 784 RQRMEDARQRHHDWI--REHGVDLPEVADWTWEAPR 817
>RAMA_ENTCL (P55922) Transcriptional activator ramA
Length = 113
Score = 28.5 bits (62), Expect = 6.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 11 SLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSR 67
SLG + +L+ L LRE+ ER+ I +Y +S +++ + ++ ++Q P + R
Sbjct: 50 SLGRYIRERKLL-LAARDLRESDERVYEICLRYGFESQQTFTRIFTRTFHQPPGAYR 105
>MTB2_METMA (P58974) Trimethylamine methyltransferase mttB2 (EC
2.1.1.-) (TMA methyltransferase 2)
Length = 495
Score = 28.5 bits (62), Expect = 6.0
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 70 DLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLWVLS 125
D+ YGGD + + + +L P+ E++V A + ++R AR G P+ VLS
Sbjct: 195 DIVKAYYGGDEEEARKKPIFSMLLCPTSPL--ELSVNACQVIIRGARFGMPVNVLS 248
>CH60_BACTR (Q8VV84) 60 kDa chaperonin (Protein Cpn60) (groEL
protein)
Length = 539
Score = 28.5 bits (62), Expect = 6.0
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 18 DEQLMKLENARLREAIERISGIVA--KYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGN 75
+E + + +L+E + +++G VA K + T + + + S+ A + G+
Sbjct: 352 EETTSEFDRGKLQERLAKLAGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVA 411
Query: 76 YGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVR 113
GG + + + I A+ D+ V++ + A+EE VR
Sbjct: 412 GGGTALMNVYNKVAAIEAEGDEATGVKIVLRAIEEPVR 449
>CH60_BACAN (Q81VE1) 60 kDa chaperonin (Protein Cpn60) (groEL
protein)
Length = 544
Score = 28.5 bits (62), Expect = 6.0
Identities = 29/132 (21%), Positives = 57/132 (42%), Gaps = 5/132 (3%)
Query: 18 DEQLMKLENARLREAIERISGIVA--KYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGVGN 75
+E + + +L+E + ++ G VA K + T + + + S+ A + G+
Sbjct: 352 EETTSEFDREKLQERLAKLVGGVAVIKVGAATETELKERKLRIEDALNSTRAAVEEGIVA 411
Query: 76 YGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLWVLSNNHNVETLNE 135
GG + + + I+A+ D+ + + + A+EE VR + L + VE L
Sbjct: 412 GGGTSLMNVYTKVASIVAEGDEATGINIVLRALEEPVRQIAINAG---LEGSVVVERLKG 468
Query: 136 EEYVREFPRGTG 147
E+ F TG
Sbjct: 469 EKVGVGFNAATG 480
>U171_DROME (Q9VUB4) Hypothetical UPF0171 protein CG8783
Length = 610
Score = 28.1 bits (61), Expect = 7.8
Identities = 28/115 (24%), Positives = 52/115 (44%), Gaps = 17/115 (14%)
Query: 39 IVAKYAGKSTTSYSSLLSQNYNQMPSSSRAFDLGV-GNYGGDGNDLLRS--------SLP 89
+V + +++ +SSL S N PSSS + + + D D L S L
Sbjct: 468 LVGGHRREASEDHSSLASDNIAVQPSSSHKSNFSITASMSTDNCDSLDSMEDEQKLKELL 527
Query: 90 PILADADKPIIVEVAVAA----MEELVRLARVGHPLWVLSNNHNVETLNEEEYVR 140
+ +DAD+ I + +A + LV+L ++G+ + H++E + E +R
Sbjct: 528 QVFSDADRAAIRRIPASANVDDLSLLVKLYQMGY----FKSEHHLEEIMYFENLR 578
>SYR_MYCTU (P67569) Arginyl-tRNA synthetase (EC 6.1.1.19)
(Arginine--tRNA ligase) (ArgRS)
Length = 550
Score = 28.1 bits (61), Expect = 7.8
Identities = 20/69 (28%), Positives = 30/69 (42%), Gaps = 3/69 (4%)
Query: 67 RAFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLWVLSN 126
R FDL + G D + + A D P VEV + ++V L R G P+ +
Sbjct: 322 RGFDLCIYMLGADHHGYIARLKAAAAAFGDDPATVEVLIG---QMVNLVRDGQPVRMSKR 378
Query: 127 NHNVETLNE 135
V TL++
Sbjct: 379 AGTVLTLDD 387
>SYR_MYCBO (P67570) Arginyl-tRNA synthetase (EC 6.1.1.19)
(Arginine--tRNA ligase) (ArgRS)
Length = 550
Score = 28.1 bits (61), Expect = 7.8
Identities = 20/69 (28%), Positives = 30/69 (42%), Gaps = 3/69 (4%)
Query: 67 RAFDLGVGNYGGDGNDLLRSSLPPILADADKPIIVEVAVAAMEELVRLARVGHPLWVLSN 126
R FDL + G D + + A D P VEV + ++V L R G P+ +
Sbjct: 322 RGFDLCIYMLGADHHGYIARLKAAAAAFGDDPATVEVLIG---QMVNLVRDGQPVRMSKR 378
Query: 127 NHNVETLNE 135
V TL++
Sbjct: 379 AGTVLTLDD 387
>RAMA_KLEPN (Q48413) Transcriptional activator ramA
Length = 113
Score = 28.1 bits (61), Expect = 7.8
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 11 SLGEMSYDEQLMKLENARLREAIERISGIVAKYAGKSTTSYSSLLSQNYNQMPSSSR 67
SLG + +L+ L LR+ +R+ I KY S +++ + ++ +NQ P + R
Sbjct: 50 SLGRYIRERKLL-LAARDLRDTDQRVYDICLKYGFDSQQTFTRVFTRTFNQPPGAYR 105
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,856,719
Number of Sequences: 164201
Number of extensions: 677215
Number of successful extensions: 1706
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1703
Number of HSP's gapped (non-prelim): 23
length of query: 152
length of database: 59,974,054
effective HSP length: 100
effective length of query: 52
effective length of database: 43,553,954
effective search space: 2264805608
effective search space used: 2264805608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Lotus: description of TM0358.18