BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0349b.2
         (400 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

VP2_BTV13 (P12395) Outer capsid protein VP2                            37  0.068
HGA2_PORGI (Q51845) Hemagglutinin A precursor                          31  6.4
HGA1_PORGI (P59915) Hemagglutinin A precursor                          31  6.4
YA02_CHLCV (P59707) Hypothetical UPF0242 protein CCA01002              30  8.4
Y5G0_CLOAB (P33747) Hypothetical protein CAP0160 precursor             30  8.4
DP3A_STRCO (Q9Z618) DNA polymerase III alpha subunit (EC 2.7.7.7)      30  8.4

>VP2_BTV13 (P12395) Outer capsid protein VP2
          Length = 959

 Score = 37.4 bits (85), Expect = 0.068
 Identities = 21/85 (24%), Positives = 41/85 (47%), Gaps = 2/85 (2%)

Query: 5   KMDPPEFDLEAYLEKSEREDTYILNRFRDRRNLILEDSAPRGRKHLSRDHAGANQRLIDD 64
           K+DP +F++E  L    +   ++ +RF ++R  +      R   HL R  +GA +  +  
Sbjct: 654 KIDPSKFEVEGTLHDVSQVMVHLFDRFFEKRRFLRTVDESRWILHLIRSASGARRLEVLS 713

Query: 65  YFLNEPTYDDGIFRRRYRMQKHVFL 89
            F   P + DG+  R ++  + + L
Sbjct: 714 RFF--PAFSDGLRIREFKKVRDIML 736


>HGA2_PORGI (Q51845) Hemagglutinin A precursor
          Length = 2628

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 27/113 (23%), Positives = 45/113 (38%), Gaps = 7/113 (6%)

Query: 44   PRGRKHLSRDHAGANQRL---IDDYFL---NEPTYDDGIFRRRYRMQKHVFLRIVADLSS 97
            P G K+++  H G        +DD  +   N P+Y   I+R   ++   V      D   
Sbjct: 2469 PAGTKYVAFRHFGCTDFFWINLDDVVITSGNAPSYTYTIYRNNTQIASGVTETTYRDPDL 2528

Query: 98   SDNYFTQRVDAAKKEGISPLAKCTTTMRMLANGVAADAVDEYIKIGETTTLEC 150
            +  ++T  V      G S +   T  +  LA+ V A        +G+T T+ C
Sbjct: 2529 ATGFYTYGVKVVYPNGESAIETATLNITSLAD-VTAQKPYTLTVVGKTITVTC 2580


>HGA1_PORGI (P59915) Hemagglutinin A precursor
          Length = 2164

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 27/113 (23%), Positives = 45/113 (38%), Gaps = 7/113 (6%)

Query: 44   PRGRKHLSRDHAGANQRL---IDDYFL---NEPTYDDGIFRRRYRMQKHVFLRIVADLSS 97
            P G K+++  H G        +DD  +   N P+Y   I+R   ++   V      D   
Sbjct: 2005 PAGTKYVAFRHFGCTDFFWINLDDVVITSGNAPSYTYTIYRNNTQIASGVTETTYRDPDL 2064

Query: 98   SDNYFTQRVDAAKKEGISPLAKCTTTMRMLANGVAADAVDEYIKIGETTTLEC 150
            +  ++T  V      G S +   T  +  LA+ V A        +G+T T+ C
Sbjct: 2065 ATGFYTYGVKVVYPNGESAIETATLNITSLAD-VTAQKPYTLTVVGKTITVTC 2116


>YA02_CHLCV (P59707) Hypothetical UPF0242 protein CCA01002
          Length = 401

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 16/46 (34%), Positives = 27/46 (57%), Gaps = 1/46 (2%)

Query: 149 ECLRRFCKGII-RLYEQEYLRAPTQEDLQRILHVNEMWGVPKHDRE 193
           E LR+ C+ +  R YE + LR+  Q+ L ++LHV  ++   K D +
Sbjct: 85  EGLRKICESVEERQYESQQLRSQNQKLLNQLLHVRSVFMKTKADTQ 130


>Y5G0_CLOAB (P33747) Hypothetical protein CAP0160 precursor
          Length = 967

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 103 TQRVDAAKKEGISPLAKCTTTMRMLANGVAADAVDEYIKIGETTTLECLRR 153
           T  + AA ++G +  + CT ++  LAN +  + + + + +G+T  L  L R
Sbjct: 96  TVTITAATQDGSNLSSSCTVSITRLANSIVLNKMVDKLPVGQTDLLTALVR 146


>DP3A_STRCO (Q9Z618) DNA polymerase III alpha subunit (EC 2.7.7.7)
          Length = 1179

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 16/54 (29%), Positives = 27/54 (49%)

Query: 4    QKMDPPEFDLEAYLEKSEREDTYILNRFRDRRNLILEDSAPRGRKHLSRDHAGA 57
            ++ D P F L+    + E + TY+L + R+   L + D    G +H+  D A A
Sbjct: 951  EQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADA 1004


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.345    0.152    0.506 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,156,862
Number of Sequences: 164201
Number of extensions: 1574362
Number of successful extensions: 5945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5942
Number of HSP's gapped (non-prelim): 6
length of query: 400
length of database: 59,974,054
effective HSP length: 112
effective length of query: 288
effective length of database: 41,583,542
effective search space: 11976060096
effective search space used: 11976060096
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 67 (30.4 bits)