BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0348.12
         (180 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MAUL_METFL (Q50422) Methylamine utilization protein mauL               31  1.4
ENV_EIAVY (P06751) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2
ENV_EIAVW (P16082) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2
ENV_EIAVC (P32541) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2
ENV_EIAV9 (P11306) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2
ENV_EIAV5 (P22430) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2
ENV_EIAV3 (P22429) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2
ENV_EIAV2 (P22428) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2
ENV_EIAV1 (P22427) ENV polyprotein precursor (Coat polyprotein) ...    29  5.2

>MAUL_METFL (Q50422) Methylamine utilization protein mauL
          Length = 157

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 77  IYLWFLH*QAWALFLAFGSLACLGPLSYAVGIAYQNAFGSGLSHGSHNPGLGFSIIVNNI 136
           I +W  H Q W   L  G + C+  ++++  +             S  P  G  I ++N 
Sbjct: 27  IVVWMFHRQTWQFLLTTGFILCISSIAWSAEVHQMELTHHEFEPWSFVPKPGDRIDIHNH 86

Query: 137 IFIVLGFVIGYP 148
             IV    + YP
Sbjct: 87  SDIVHAIYVTYP 98


>ENV_EIAVY (P06751) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 603 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 648


>ENV_EIAVW (P16082) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 603 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 648


>ENV_EIAVC (P32541) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 603 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 648


>ENV_EIAV9 (P11306) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 603 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 648


>ENV_EIAV5 (P22430) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 860

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 604 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 649


>ENV_EIAV3 (P22429) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 603 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 648


>ENV_EIAV2 (P22428) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 603 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 648


>ENV_EIAV1 (P22427) ENV polyprotein precursor (Coat polyprotein)
           [Contains: Coat protein GP90; Coat protein GP45]
          Length = 859

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 114 FGSGL-SH-GSHNPGLGFSIIVNNIIFIVLGFVIGYPLASAPVKVIQGLWR 162
           FG  L SH G+  PGLG SII   ++F+++     Y L ++  K+++ LW+
Sbjct: 603 FGKDLWSHIGNWIPGLGASIIKYIVMFLLI-----YLLLTSSPKILRALWK 648


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.340    0.149    0.512 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,136,860
Number of Sequences: 164201
Number of extensions: 757924
Number of successful extensions: 2297
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2297
Number of HSP's gapped (non-prelim): 9
length of query: 180
length of database: 59,974,054
effective HSP length: 103
effective length of query: 77
effective length of database: 43,061,351
effective search space: 3315724027
effective search space used: 3315724027
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 62 (28.5 bits)