BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0346.4
(142 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB10_HUMAN (Q9NRK6) ATP-binding cassette, sub-family B, member 1... 78 7e-15
MDR3_CAEEL (P34713) Multidrug resistance protein 3 (P-glycoprote... 75 4e-14
MDR4_DROME (Q00449) Multidrug resistance protein homolog 49 (P-g... 72 3e-13
MDR1_HUMAN (P08183) Multidrug resistance protein 1 (P-glycoprote... 72 3e-13
AB10_MOUSE (Q9JI39) ATP-binding cassette, sub-family B, member 1... 72 3e-13
ABC8_HUMAN (Q9NUT2) ATP-binding cassette, sub-family B, member 8... 72 5e-13
MDR3_CRIGR (P23174) Multidrug resistance protein 3 (P-glycoprote... 70 1e-12
MDR3_MOUSE (P21447) Multidrug resistance protein 3 (P-glycoprote... 70 1e-12
MDR1_CRIGR (P21448) Multidrug resistance protein 1 (P-glycoprote... 70 1e-12
MDR3_HUMAN (P21439) Multidrug resistance protein 3 (P-glycoprote... 69 3e-12
MDR2_MOUSE (P21440) Multidrug resistance protein 2 (P-glycoprote... 69 3e-12
MSBA_PSEAE (Q9HUG8) Lipid A export ATP-binding/permease protein ... 69 4e-12
MSBA_PSESM (Q87VF3) Lipid A export ATP-binding/permease protein ... 68 6e-12
MDR2_RAT (Q08201) Multidrug resistance protein 2 (P-glycoprotein... 68 6e-12
MDR2_CRIGR (P21449) Multidrug resistance protein 2 (P-glycoprote... 68 6e-12
MDR1_RAT (P43245) Multidrug resistance protein 1 (P-glycoprotein 1) 68 7e-12
MDR1_MOUSE (P06795) Multidrug resistance protein 1 (P-glycoprote... 67 1e-11
MSBA_SALTY (P63359) Lipid A export ATP-binding/permease protein ... 67 2e-11
MSBA_SALTI (P63360) Lipid A export ATP-binding/permease protein ... 67 2e-11
MSBA_RALSO (Q8XXB6) Lipid A export ATP-binding/permease protein ... 67 2e-11
>AB10_HUMAN (Q9NRK6) ATP-binding cassette, sub-family B, member 10,
mitochondrial precursor (ATP-binding cassette
transporter 10) (ABC transporter 10 protein)
(Mitochondrial ATP-binding cassette 2) (M-ABC2)
Length = 738
Score = 77.8 bits (190), Expect = 7e-15
Identities = 40/63 (63%), Positives = 48/63 (75%), Gaps = 1/63 (1%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQEALDR M GRT LVIAHRLSTI+ A++VAVL QG ++E G H+EL SK NG+Y L+
Sbjct: 672 VQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSK-PNGIYRKLM 730
Query: 115 KMQ 117
Q
Sbjct: 731 NKQ 733
>MDR3_CAEEL (P34713) Multidrug resistance protein 3 (P-glycoprotein
C)
Length = 1268
Score = 75.5 bits (184), Expect = 4e-14
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQ ALD+ GRTTL IAHRLSTIR A + V QG ++E GTHDEL SK ++G+YA+
Sbjct: 551 RMVQTALDKASEGRTTLCIAHRLSTIRNASKILVFDQGLIAERGTHDELISK-DDGIYAS 609
Query: 113 LVKMQEM 119
+VK QE+
Sbjct: 610 MVKAQEI 616
Score = 61.6 bits (148), Expect = 5e-10
Identities = 33/65 (50%), Positives = 43/65 (65%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ +GRT +VIAHRLSTI+ AD + V + G E GTH L ++ G+Y
Sbjct: 1204 KIVQEALDKARLGRTCVVIAHRLSTIQNADKIIVCRNGKAIEEGTHQTLLAR--RGLYYR 1261
Query: 113 LVKMQ 117
LV+ Q
Sbjct: 1262 LVEKQ 1266
>MDR4_DROME (Q00449) Multidrug resistance protein homolog 49
(P-glycoprotein 49)
Length = 1302
Score = 72.4 bits (176), Expect = 3e-13
Identities = 38/68 (55%), Positives = 49/68 (71%), Gaps = 2/68 (2%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQ+ALD GRT L IAHRL+T+R ADL+ VL++G V E GTHDEL + N +YAN
Sbjct: 1236 KVVQQALDEARSGRTCLTIAHRLTTVRNADLICVLKRGVVVEHGTHDELMAL--NKIYAN 1293
Query: 113 LVKMQEMA 120
L MQ+++
Sbjct: 1294 LYLMQQVS 1301
Score = 59.7 bits (143), Expect = 2e-09
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQ AL+ G TTLV+AHRLSTI AD + L+ G V+E GTH+EL + G+Y
Sbjct: 577 KRVQSALELASQGPTTLVVAHRLSTITNADKIVFLKDGVVAEQGTHEELMER--RGLYCE 634
Query: 113 LVKMQEMAHET 123
LV + + T
Sbjct: 635 LVSITQRKEAT 645
>MDR1_HUMAN (P08183) Multidrug resistance protein 1 (P-glycoprotein
1) (CD243 antigen)
Length = 1280
Score = 72.4 bits (176), Expect = 3e-13
Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A G + E G HDEL E G+Y LV
Sbjct: 569 VQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMK--EKGIYFKLV 626
Query: 115 KMQEMAHETAMNNARKSS 132
MQ +E + NA S
Sbjct: 627 TMQTAGNEVELENAADES 644
Score = 68.9 bits (167), Expect = 3e-12
Identities = 35/65 (53%), Positives = 46/65 (69%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V Q G V E GTH +L + + G+Y +
Sbjct: 1212 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLA--QKGIYFS 1269
Query: 113 LVKMQ 117
+V +Q
Sbjct: 1270 MVSVQ 1274
>AB10_MOUSE (Q9JI39) ATP-binding cassette, sub-family B, member 10,
mitochondrial precursor (ATP-binding cassette
transporter 10) (ABC transporter 10 protein)
(ABC-mitochondrial erythroid protein) (ABC-me protein)
Length = 715
Score = 72.4 bits (176), Expect = 3e-13
Identities = 38/63 (60%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQEALDR M GRT L+IAHRLSTI+ A+ VAVL G + E GTH+EL K NG+Y L+
Sbjct: 637 VQEALDRLMEGRTVLIIAHRLSTIKNANFVAVLDHGKICEHGTHEELLLK-PNGLYRKLM 695
Query: 115 KMQ 117
Q
Sbjct: 696 NKQ 698
>ABC8_HUMAN (Q9NUT2) ATP-binding cassette, sub-family B, member 8,
mitochondrial precursor (Mitochondrial ATP-binding
cassette 1) (M-ABC1)
Length = 735
Score = 71.6 bits (174), Expect = 5e-13
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQEALDR GRT LVIAHRLST+R A + V+ G V E GTH+EL KG G+YA
Sbjct: 648 RVVQEALDRASAGRTVLVIAHRLSTVRGAHCIVVMADGRVWEAGTHEELLKKG--GLYAE 705
Query: 113 LVKMQEM 119
L++ Q +
Sbjct: 706 LIRRQAL 712
>MDR3_CRIGR (P23174) Multidrug resistance protein 3 (P-glycoprotein 3)
Length = 1281
Score = 70.5 bits (171), Expect = 1e-12
Identities = 36/71 (50%), Positives = 49/71 (68%), Gaps = 2/71 (2%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V+Q G V E GTH +L + + G+Y +
Sbjct: 1213 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFS 1270
Query: 113 LVKMQEMAHET 123
+V +Q A +
Sbjct: 1271 MVNIQAGAQNS 1281
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/63 (55%), Positives = 43/63 (67%), Gaps = 2/63 (3%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A + G + E G+H EL K GVY LV
Sbjct: 571 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMQK--EGVYFKLV 628
Query: 115 KMQ 117
MQ
Sbjct: 629 NMQ 631
>MDR3_MOUSE (P21447) Multidrug resistance protein 3 (P-glycoprotein 3)
(MDR1A)
Length = 1276
Score = 70.1 bits (170), Expect = 1e-12
Identities = 35/65 (53%), Positives = 47/65 (71%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V+Q G V E GTH +L + + G+Y +
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFS 1265
Query: 113 LVKMQ 117
+V +Q
Sbjct: 1266 MVSVQ 1270
Score = 66.6 bits (161), Expect = 2e-11
Identities = 36/73 (49%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A G + E G HDEL E G+Y LV
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR--EKGIYFKLV 622
Query: 115 KMQEMAHETAMNN 127
Q +E + N
Sbjct: 623 MTQTAGNEIELGN 635
>MDR1_CRIGR (P21448) Multidrug resistance protein 1 (P-glycoprotein 1)
Length = 1276
Score = 70.1 bits (170), Expect = 1e-12
Identities = 35/65 (53%), Positives = 47/65 (71%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V+Q G V E GTH +L + + G+Y +
Sbjct: 1209 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFS 1266
Query: 113 LVKMQ 117
+V +Q
Sbjct: 1267 MVSVQ 1271
Score = 65.5 bits (158), Expect = 4e-11
Identities = 35/73 (47%), Positives = 45/73 (60%), Gaps = 2/73 (2%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A G + E G H+EL E G+Y LV
Sbjct: 566 VQAALDKAREGRTTIVIAHRLSTVRNADIIAGFDGGVIVEQGNHEELMR--EKGIYFKLV 623
Query: 115 KMQEMAHETAMNN 127
Q +E + N
Sbjct: 624 MTQTAGNEIELGN 636
>MDR3_HUMAN (P21439) Multidrug resistance protein 3 (P-glycoprotein 3)
Length = 1279
Score = 68.9 bits (167), Expect = 3e-12
Identities = 35/65 (53%), Positives = 46/65 (69%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V Q G V E GTH +L + + G+Y +
Sbjct: 1211 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLA--QKGIYFS 1268
Query: 113 LVKMQ 117
+V +Q
Sbjct: 1269 MVSVQ 1273
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/63 (55%), Positives = 43/63 (67%), Gaps = 2/63 (3%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A + G + E G+H EL K GVY LV
Sbjct: 571 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELMKK--EGVYFKLV 628
Query: 115 KMQ 117
MQ
Sbjct: 629 NMQ 631
>MDR2_MOUSE (P21440) Multidrug resistance protein 2 (P-glycoprotein 2)
Length = 1276
Score = 68.9 bits (167), Expect = 3e-12
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V++ G V E GTH +L + + G+Y +
Sbjct: 1208 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLA--QKGIYFS 1265
Query: 113 LVKMQ 117
+V +Q
Sbjct: 1266 MVNIQ 1270
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/63 (55%), Positives = 43/63 (67%), Gaps = 2/63 (3%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLSTIR AD++A + G + E G+H EL K G+Y LV
Sbjct: 568 VQAALDKAREGRTTIVIAHRLSTIRNADVIAGFEDGVIVEQGSHSELMKK--EGIYFRLV 625
Query: 115 KMQ 117
MQ
Sbjct: 626 NMQ 628
>MSBA_PSEAE (Q9HUG8) Lipid A export ATP-binding/permease protein
msbA
Length = 603
Score = 68.6 bits (166), Expect = 4e-12
Identities = 37/62 (59%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
+Q ALD M GRTTLVIAHRLSTI KADL+ V+ QG + E G+H EL + +NG YA L
Sbjct: 533 IQAALDEVMKGRTTLVIAHRLSTIEKADLILVMDQGQIVERGSHAELLA--QNGHYARLH 590
Query: 115 KM 116
M
Sbjct: 591 AM 592
>MSBA_PSESM (Q87VF3) Lipid A export ATP-binding/permease protein
msbA
Length = 600
Score = 68.2 bits (165), Expect = 6e-12
Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
+Q ALD M GRTTLVIAHRLSTI KAD++ V+ G + E GTH EL + +NG YA L
Sbjct: 530 IQAALDHVMKGRTTLVIAHRLSTIEKADMILVMDAGKIVERGTHTELLA--QNGYYARLH 587
Query: 115 KM 116
M
Sbjct: 588 AM 589
>MDR2_RAT (Q08201) Multidrug resistance protein 2 (P-glycoprotein 2)
(P-glycoprotein 3)
Length = 1278
Score = 68.2 bits (165), Expect = 6e-12
Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V+ G V E GTH +L + + G+Y +
Sbjct: 1210 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIDNGKVKEHGTHQQLLA--QKGIYFS 1267
Query: 113 LVKMQ 117
+V +Q
Sbjct: 1268 MVNIQ 1272
Score = 65.5 bits (158), Expect = 4e-11
Identities = 34/63 (53%), Positives = 43/63 (67%), Gaps = 2/63 (3%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A + G + E G+H EL K G+Y LV
Sbjct: 568 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFEDGVIVEQGSHSELIKK--EGIYFRLV 625
Query: 115 KMQ 117
MQ
Sbjct: 626 NMQ 628
>MDR2_CRIGR (P21449) Multidrug resistance protein 2 (P-glycoprotein 2)
Length = 1276
Score = 68.2 bits (165), Expect = 6e-12
Identities = 34/63 (53%), Positives = 46/63 (72%), Gaps = 2/63 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V+Q G V E GTH +L + + G+Y +
Sbjct: 1210 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA--QKGIYFS 1267
Query: 113 LVK 115
+V+
Sbjct: 1268 MVQ 1270
Score = 67.4 bits (163), Expect = 1e-11
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A G + E G H+EL E G+Y LV
Sbjct: 568 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMK--EKGIYCRLV 625
Query: 115 KMQEMAHETAMNNARKSS 132
MQ +E + + S
Sbjct: 626 MMQTRGNEVELGSEADGS 643
>MDR1_RAT (P43245) Multidrug resistance protein 1 (P-glycoprotein 1)
Length = 1277
Score = 67.8 bits (164), Expect = 7e-12
Identities = 34/63 (53%), Positives = 46/63 (72%), Gaps = 2/63 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V+Q G V E GTH +L + + G+Y +
Sbjct: 1211 KVVQEALDKAREGRTCVVIAHRLSTIQNADLIVVIQNGQVKEHGTHQQLLA--QKGIYFS 1268
Query: 113 LVK 115
+V+
Sbjct: 1269 MVQ 1271
Score = 64.7 bits (156), Expect = 6e-11
Identities = 38/80 (47%), Positives = 49/80 (60%), Gaps = 3/80 (3%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A G + E G H+EL E G+Y LV
Sbjct: 568 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHEELMK--EKGIYFKLV 625
Query: 115 KMQEMAHETAM-NNARKSSA 133
Q +E NNA +S +
Sbjct: 626 MTQTRGNEIEPGNNAYESQS 645
>MDR1_MOUSE (P06795) Multidrug resistance protein 1 (P-glycoprotein 1)
Length = 1276
Score = 67.0 bits (162), Expect = 1e-11
Identities = 33/63 (52%), Positives = 46/63 (72%), Gaps = 2/63 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
K VQEALD+ GRT +VIAHRLSTI+ ADL+ V++ G V E GTH +L + + G+Y +
Sbjct: 1210 KVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIENGKVKEHGTHQQLLA--QKGIYFS 1267
Query: 113 LVK 115
+V+
Sbjct: 1268 MVQ 1270
Score = 65.1 bits (157), Expect = 5e-11
Identities = 36/73 (49%), Positives = 44/73 (59%), Gaps = 2/73 (2%)
Query: 55 VQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYANLV 114
VQ ALD+ GRTT+VIAHRLST+R AD++A G + E G HDEL E G+Y LV
Sbjct: 568 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR--EKGIYFKLV 625
Query: 115 KMQEMAHETAMNN 127
Q +E N
Sbjct: 626 MTQTRGNEIEPGN 638
>MSBA_SALTY (P63359) Lipid A export ATP-binding/permease protein
msbA
Length = 582
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/65 (53%), Positives = 46/65 (69%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+A+Q ALD RT+LVIAHRLSTI +AD + V++ G + E GTH EL + ++GVYA
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA--QHGVYAQ 574
Query: 113 LVKMQ 117
L KMQ
Sbjct: 575 LHKMQ 579
>MSBA_SALTI (P63360) Lipid A export ATP-binding/permease protein
msbA
Length = 582
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/65 (53%), Positives = 46/65 (69%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+A+Q ALD RT+LVIAHRLSTI +AD + V++ G + E GTH EL + ++GVYA
Sbjct: 517 RAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA--QHGVYAQ 574
Query: 113 LVKMQ 117
L KMQ
Sbjct: 575 LHKMQ 579
>MSBA_RALSO (Q8XXB6) Lipid A export ATP-binding/permease protein
msbA
Length = 592
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/65 (53%), Positives = 45/65 (68%), Gaps = 2/65 (3%)
Query: 53 KAVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELCSKGENGVYAN 112
+ VQ AL+ M GRTTLVIAHRLSTI AD + VL+ G + E GTH EL + +G+YA
Sbjct: 526 RQVQAALEALMQGRTTLVIAHRLSTIENADRIVVLEHGQIVEAGTHRELLDR--DGLYAG 583
Query: 113 LVKMQ 117
L ++Q
Sbjct: 584 LHRIQ 588
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.335 0.142 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,060,857
Number of Sequences: 164201
Number of extensions: 412719
Number of successful extensions: 2166
Number of sequences better than 10.0: 205
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1941
Number of HSP's gapped (non-prelim): 249
length of query: 142
length of database: 59,974,054
effective HSP length: 99
effective length of query: 43
effective length of database: 43,718,155
effective search space: 1879880665
effective search space used: 1879880665
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 60 (27.7 bits)
Lotus: description of TM0346.4