BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0344.11
(579 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13A_RAT (Q62768) Unc-13 homolog A (Munc13-1) 40 0.013
ORC1_DROME (O16810) Origin recognition complex subunit 1 (DmORC1) 40 0.017
RA50_YEAST (P12753) DNA repair protein RAD50 (153 kDa protein) 38 0.083
INT1_CANAL (P53705) Integrin alpha chain-like protein (Alpha-INT1) 37 0.11
SYE_NEIMA (Q9JWT4) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 35 0.54
YG87_MYCPN (Q50315) Protein MPN687 (K05_orf250) 34 0.92
YD64_MYCPN (P75417) Hypothetical protein MPN364 (H91_orf677) 34 0.92
GDF8_BRARE (O42222) Growth/differentiation factor 8 precursor (G... 34 0.92
SYE_NEIMB (Q9K1R6) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Gluta... 34 1.2
ANK3_HUMAN (Q12955) Ankyrin 3 (ANK-3) (Ankyrin G) 33 1.6
NX3B_HUMAN (Q9HDB5) Neurexin 3-beta precursor (Neurexin III-beta) 33 2.0
NX3A_HUMAN (Q9Y4C0) Neurexin 3-alpha precursor (Neurexin III-alpha) 33 2.0
NM3A_RAT (Q9R1M7) Glutamate [NMDA] receptor subunit 3A precursor... 33 2.0
NFL_PIG (P02547) Neurofilament triplet L protein (68 kDa neurofi... 33 2.0
SMY2_YEAST (P32909) SMY2 protein 33 2.7
MPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A (... 33 2.7
VCLB_PEA (P02854) Provicilin precursor (Type B) (Fragment) 32 3.5
ROC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C... 32 3.5
ODO2_SCHPO (O94681) Probable dihydrolipoyllysine-residue succiny... 32 3.5
DD10_HUMAN (Q13206) Probable ATP-dependent RNA helicase DDX10 (D... 32 3.5
>U13A_RAT (Q62768) Unc-13 homolog A (Munc13-1)
Length = 1735
Score = 40.4 bits (93), Expect = 0.013
Identities = 29/127 (22%), Positives = 60/127 (46%), Gaps = 13/127 (10%)
Query: 28 EDFDTTLKEI-ATKVDE---LDLAQGCTSKANIHTDSPKWRLDDYNIFVIDSSDDEDVPR 83
EDFD + +++D+ D C S + H DSP+W D+ ++ ++ +DE++P
Sbjct: 277 EDFDPDEHSLQGSELDDERDRDSYHSCHSSVSYHKDSPRWDQDEEDLEDLEDLEDEELPE 336
Query: 84 TATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARKR 143
+++++ E LE + EL + L+ E+ + SY + ++ + KR
Sbjct: 337 -----EEELEEEELEEEEELEEEE----LELEEEEEVPDDLASYTQQEDTTVAEPKEFKR 387
Query: 144 LPYTPEA 150
+ + A
Sbjct: 388 ISFPTAA 394
>ORC1_DROME (O16810) Origin recognition complex subunit 1 (DmORC1)
Length = 924
Score = 40.0 bits (92), Expect = 0.017
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 19/126 (15%)
Query: 79 EDVPRTATHLQKQVKTEVLERQHELITP-QGKSFLQFEQNKVFGSGKDSYQRAPKKSMED 137
E PR + HL V+ V E + TP +G+S + N S K S Q+ P ++
Sbjct: 437 EGTPRRSIHLSNIVEQRVFEDDEIISTPKRGRSKKTVQDNDEDYSPKKSVQKTPTRTRRS 496
Query: 138 SLARK-------------RLPYTPEAKRPK-----LEPNLQSHKLIKTKFKPSEDMKLTP 179
S K P TP K K L P++Q + K +++L
Sbjct: 497 STTTKTATTPSKGITTATATPMTPSQKMKKIRAGELSPSMQQRTDLPAKDSSKSELQLAR 556
Query: 180 TQLHLA 185
QLH++
Sbjct: 557 EQLHVS 562
>RA50_YEAST (P12753) DNA repair protein RAD50 (153 kDa protein)
Length = 1312
Score = 37.7 bits (86), Expect = 0.083
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 27 LEDFDTTLKEIATKVDELDLAQGCTSKANIHTDSPKWRLDDYNIFVIDSSDDEDVPRTA- 85
LE TL I K+D +Q C KA T + K +LD+ + D++++ +
Sbjct: 736 LEKHIITLNSINEKIDN---SQKCLEKAKEETKTSKSKLDELEVDSTKLKDEKELAESEI 792
Query: 86 -------THLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQ-----RAPKK 133
T+L+K++K LE + I+ E+ ++ + +D Q R ++
Sbjct: 793 RPLIEKFTYLEKELKD--LENSSKTIS---------EELSIYNTSEDGIQTVDELRDQQR 841
Query: 134 SMEDSL--ARKRLPYTPEAKRPKLEPNLQSHKLIKTKFKPSEDMKLTPTQ 181
M DSL RK + K K+ N + LIK K +++ + TQ
Sbjct: 842 KMNDSLRELRKTISDLQMEKDEKVRENSRMINLIKEKELTVSEIESSLTQ 891
>INT1_CANAL (P53705) Integrin alpha chain-like protein (Alpha-INT1)
Length = 1664
Score = 37.4 bits (85), Expect = 0.11
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 19 QNEAMTTKLEDFDTTLKEIATKVDELDLAQGCTSKA-NIHTDSPKWRLDDYNIFVIDSSD 77
+NEA + +ED D LK+ +E D Q T + H DS W+L+D N D D
Sbjct: 554 ENEA-NSHVEDTDALLKKALNDDEESDTTQNSTKMSIRFHIDS-DWKLEDSNDG--DRED 609
Query: 78 DEDVPRTATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMED 137
++D+ R + + +V + + G S + + D+ + KS+ED
Sbjct: 610 NDDISRFE---KSDILNDVSQTSDIIGDKYGNSSSEITTKTLAPPRSDNNDKENSKSLED 666
Query: 138 SLARKRLPYTPEAKRPKLEPNLQSHKLIKTKFKPSEDMKL 177
+ L E K + ++ ++ + P E++ L
Sbjct: 667 PANNESLQQQLEVPHTKEDDSILAN---SSNIAPPEELTL 703
>SYE_NEIMA (Q9JWT4) Glutamyl-tRNA synthetase (EC 6.1.1.17)
(Glutamate--tRNA ligase) (GluRS)
Length = 464
Score = 35.0 bits (79), Expect = 0.54
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 36 EIATKVDELDLAQGCTSKANIHTDSPKWRLDDYNIFVIDSSDDEDVPRTATHLQKQVKTE 95
E ++++ DLA+ NI D KW +Y D++D+ K+V E
Sbjct: 36 EFLLRIEDTDLARSTAESVNIILDGMKWVGLNY-----DNADNVVYQTRRFDRYKEVIAE 90
Query: 96 VLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARKRLPYTPEAKRP 153
+LE+ H K L+ + K G +Y R + A K LP P +P
Sbjct: 91 LLEKGHAYYCYCSKEELEAMREKAEKEGTATYDRRWRPE-----AGKTLPEIPAGVQP 143
>YG87_MYCPN (Q50315) Protein MPN687 (K05_orf250)
Length = 250
Score = 34.3 bits (77), Expect = 0.92
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 14/159 (8%)
Query: 71 FVIDSSDDEDVPRTATHLQK---QVKTE-VLERQHELITPQGKSFLQFEQNKVFGSGKDS 126
F D + DED T ++K Q+K E V++ QH+L T Q K+ + K F
Sbjct: 9 FFFDLAQDEDDAETVQEVKKVEQQLKLEPVVQPQHDL-TNQTKANQSSQDRKFFSKDMPQ 67
Query: 127 YQRAPKKSMEDSLARKRLPYTPEAKRPKLEPNLQSHKL-IKTKFKPSEDMKLTPTQ-LHL 184
+ P D + + PK EP + + ++ + +P+ PTQ +H
Sbjct: 68 FDFGPLLKFGDEFVKSFNQF------PKQEPQTSTQPVNVQPQSEPTNFNNQVPTQPVHQ 121
Query: 185 AAYIFHPDNIQTETIFKIGNISATVNDFDCLNPERVVEP 223
A + H + Q T ++ + +VEP
Sbjct: 122 TAEV-HLNEFQQPTTTNFNQQPVATSNIQVEATQPIVEP 159
>YD64_MYCPN (P75417) Hypothetical protein MPN364 (H91_orf677)
Length = 677
Score = 34.3 bits (77), Expect = 0.92
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 22/191 (11%)
Query: 10 NRIDEAILVQNEAMTTKLEDFDTTLKEIATKVDELDLAQGCTSKANI------HTDSPKW 63
N+ D AIL+ N+ + KLE + T+V + A T+K N +T +
Sbjct: 403 NKGDNAILITNQTVIDKLEKAAKEDGKSGTQVSTI--ASKSTTKENQENKIIGYTSTDNL 460
Query: 64 RLDDYNIFVIDSSDDEDVPR----TATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKV 119
R D+ NIF ID +DE R +AT + ++ L+ + ++ P + + K+
Sbjct: 461 REDNKNIFDIDDLNDEKYDRKIIVSATE-EVLEQSNTLQSEEAVVLPAPAKYKASDSTKI 519
Query: 120 FGSGKDSYQRAPKKSMEDSLARKRLPYTPEAKRPKLEPNLQSHKLIKTKFKPSEDMKLTP 179
+ + + E+ RK + + + E +S K K K +E K TP
Sbjct: 520 AITQEPNLIGIHANEKENEETRKFVNWFLNS-----EQTWESKKYSKNKQNSNE--KRTP 572
Query: 180 TQLHL--AAYI 188
Q A+YI
Sbjct: 573 AQFFADSASYI 583
>GDF8_BRARE (O42222) Growth/differentiation factor 8 precursor
(GDF-8) (Myostatin)
Length = 374
Score = 34.3 bits (77), Expect = 0.92
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 442 HSVIAELEAISKELQETIRIAAARKIKVDALIQTLK-----EEAGQEGEHAADAEREGSA 496
HS + L AI ++ +R+ A I D + Q L ++ + + D ++G+
Sbjct: 48 HSKLMRLHAIKSQILSKLRLKQAPNISRDVVKQLLPKAPPLQQLLDQYDVLGDDSKDGAV 107
Query: 497 ENDEEHSSSSVCSFVKTRP 515
E D+EH+++ + T P
Sbjct: 108 EEDDEHATTETIMTMATEP 126
>SYE_NEIMB (Q9K1R6) Glutamyl-tRNA synthetase (EC 6.1.1.17)
(Glutamate--tRNA ligase) (GluRS)
Length = 464
Score = 33.9 bits (76), Expect = 1.2
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 36 EIATKVDELDLAQGCTSKANIHTDSPKWRLDDYNIFVIDSSDDEDVPRTATHLQKQVKTE 95
E ++++ DLA+ NI D KW +Y D++D+ K+V E
Sbjct: 36 EFLLRIEDTDLARSTAESVNIILDGMKWVGLNY-----DNADNVVYQTRRFDRYKEVIAE 90
Query: 96 VLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARKRLPYTPEAKRP 153
+LE+ H K L+ + K G +Y R + + K LP P +P
Sbjct: 91 LLEKGHAYYCYCSKEELEAMREKAEKEGSATYDRRWRPEV-----GKTLPEIPSDVQP 143
>ANK3_HUMAN (Q12955) Ankyrin 3 (ANK-3) (Ankyrin G)
Length = 4377
Score = 33.5 bits (75), Expect = 1.6
Identities = 49/177 (27%), Positives = 73/177 (40%), Gaps = 23/177 (12%)
Query: 5 VLTKINRIDEAILVQ-------NEAMTTKLEDFDTTLKEIATKVDELDLAQGCTSKANIH 57
VLTKINRID L++ N + T D + D +D Q TS N+
Sbjct: 4157 VLTKINRIDIVTLLEGPIFDYGNISGTRSFADENNVFH------DPVDGWQNETSSGNLE 4210
Query: 58 TDSPKWRLDDYNIFVIDSSDDEDVPRTATHLQKQVKTEVLERQHELITPQG--KSFLQFE 115
+ + R+ + +D S D+ ++L+ + H ITP+ KS+
Sbjct: 4211 SCAQARRVTGGLLDRLDDSPDQCRDSITSYLKGEAGKFEANGSHTEITPEAKTKSYFPES 4270
Query: 116 QNKVFGSGKDSYQRAPKKSMEDSLARKRLPYTPEAKRPK-LEPNLQSHKLIKTKFKP 171
QN V GK S + K + S P +P A K LE ++ KLI + KP
Sbjct: 4271 QNDV---GKQSTKETLKPKIHGS-GHVEEPASPLAAYQKSLE---ETSKLIIEETKP 4320
>NX3B_HUMAN (Q9HDB5) Neurexin 3-beta precursor (Neurexin III-beta)
Length = 536
Score = 33.1 bits (74), Expect = 2.0
Identities = 39/172 (22%), Positives = 66/172 (37%), Gaps = 18/172 (10%)
Query: 9 INRIDEAILVQNEAMTTKLE-DFDTTLKEIATKVDELDLAQGCTSKANIHTDSPKWRLDD 67
+ + E + TT + + TT+ E T + T++ N T S + DD
Sbjct: 255 VRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATT------TTRKNRSTASIQPTSDD 308
Query: 68 YNIFVIDSSDDEDVPRTATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSY 127
SSDDED K + T + E ++ P+ +S F NKV
Sbjct: 309 LVSSAECSSDDEDFVECEPSTDKSLSTSIFEGGYKAHAPKWES-KDFRPNKV-------- 359
Query: 128 QRAPKKSMEDSLARKRLPYTPEAKRPKLEPNLQSHKLIKTKFKPSEDMKLTP 179
++ SL+ + + +T + + P L + K+ KP D+ L P
Sbjct: 360 -SETSRTTTTSLSPELIRFTASSS-SGMVPKLPAGKMNNRDLKPQPDIVLLP 409
>NX3A_HUMAN (Q9Y4C0) Neurexin 3-alpha precursor (Neurexin III-alpha)
Length = 1541
Score = 33.1 bits (74), Expect = 2.0
Identities = 39/172 (22%), Positives = 66/172 (37%), Gaps = 18/172 (10%)
Query: 9 INRIDEAILVQNEAMTTKLE-DFDTTLKEIATKVDELDLAQGCTSKANIHTDSPKWRLDD 67
+ + E + TT + + TT+ E T + T++ N T S + DD
Sbjct: 1260 VRLVGEVPSILGTTQTTSMPPEMSTTVMETTTTMATT------TTRKNRSTASIQPTSDD 1313
Query: 68 YNIFVIDSSDDEDVPRTATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSY 127
SSDDED K + T + E ++ P+ +S F NKV
Sbjct: 1314 LVSSAECSSDDEDFVECEPSTDKSLSTSIFEGGYKAHAPKWES-KDFRPNKV-------- 1364
Query: 128 QRAPKKSMEDSLARKRLPYTPEAKRPKLEPNLQSHKLIKTKFKPSEDMKLTP 179
++ SL+ + + +T + + P L + K+ KP D+ L P
Sbjct: 1365 -SETSRTTTTSLSPELIRFTASSS-SGMVPKLPAGKMNNRDLKPQPDIVLLP 1414
>NM3A_RAT (Q9R1M7) Glutamate [NMDA] receptor subunit 3A precursor
(N-methyl-D-aspartate receptor subtype 3A) (NR3A)
(NMDAR-L) (NMDAR-L1) (N-methyl-D-aspartate receptor)
(Chi-1)
Length = 1135
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/65 (30%), Positives = 36/65 (54%), Gaps = 11/65 (16%)
Query: 422 DIDLPSSRTSVPASMSASG--------THSVIAELEAISKELQ---ETIRIAAARKIKVD 470
DI LP R +PAS++ +G SVI EL + K++Q + +++A +RK +++
Sbjct: 1065 DIPLPQRRRELPASLTTNGKADSLNVTRSSVIQELSELEKQIQVIRQELQLAVSRKTELE 1124
Query: 471 ALIQT 475
+T
Sbjct: 1125 EYQKT 1129
>NFL_PIG (P02547) Neurofilament triplet L protein (68 kDa
neurofilament protein) (Neurofilament light polypeptide)
(NF-L)
Length = 548
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 454 ELQETIRIAAARKIKVDALIQTLKEEAGQEGEHA---ADAEREGSAENDE 500
E++ETI A A + K + + EE G+E E A A+AE EG+ E +E
Sbjct: 452 EVEETIEAAKAEEAKDEPPSEGEAEEEGKEKEEAEAEAEAEEEGAQEEEE 501
>SMY2_YEAST (P32909) SMY2 protein
Length = 790
Score = 32.7 bits (73), Expect = 2.7
Identities = 20/85 (23%), Positives = 46/85 (53%), Gaps = 2/85 (2%)
Query: 437 SASGTHSVIAELEAISKELQ--ETIRIAAARKIKVDALIQTLKEEAGQEGEHAADAEREG 494
S S +++ E E ++EL+ E R++ +K K D L++ KE+ Q+ + A +AE++
Sbjct: 421 SESVAKALLDEQEKRNRELKRKEEARLSKKQKQKEDDLLKKQKEQKEQKEKEALEAEKQK 480
Query: 495 SAENDEEHSSSSVCSFVKTRPVQEI 519
+E ++ + + F ++ + +
Sbjct: 481 KSEKTKKDTQTQTEGFKTSKDLPSL 505
>MPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A
(Myosin phosphatase targeting subunit 1) (Myosin
phosphatase target subunit 1) (Protein phosphatase
myosin-binding subunit) (MBSP) (Serine/threonine protein
phosphatase PP1 smooth muscle regu
Length = 1032
Score = 32.7 bits (73), Expect = 2.7
Identities = 21/68 (30%), Positives = 29/68 (41%), Gaps = 6/68 (8%)
Query: 473 IQTLKEEAGQEGEHAADAEREGSAENDEEHSSSSVCSFVKTRPVQEIFYVQVFKCYKLAS 532
I++L++E E E E S+E DEE S S KT+P+ + AS
Sbjct: 334 IESLEQEKADEEEEGKKDESSCSSEEDEEDDSESEAETDKTKPMASVTNAHT------AS 387
Query: 533 VQVVPRGV 540
Q P V
Sbjct: 388 TQAAPAAV 395
>VCLB_PEA (P02854) Provicilin precursor (Type B) (Fragment)
Length = 410
Score = 32.3 bits (72), Expect = 3.5
Identities = 22/84 (26%), Positives = 37/84 (43%), Gaps = 5/84 (5%)
Query: 417 DPHVLDIDLPSSRTSVPASMSASGTHSVIAELEAISKELQETIRIAAARKIKVDALIQTL 476
+P VLD+ +P ++ S SGT + + L SK + E AA + + + L
Sbjct: 130 EPRVLDLAIPVNKPGQLQSFLLSGTQNQKSSLSGFSKNILE-----AAFNTNYEEIEKVL 184
Query: 477 KEEAGQEGEHAADAEREGSAENDE 500
E+ QE +H + N+E
Sbjct: 185 LEQQEQEPQHRRSLKDRRQEINEE 208
>ROC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2
(hnRNP C1 / hnRNP C2)
Length = 306
Score = 32.3 bits (72), Expect = 3.5
Identities = 20/61 (32%), Positives = 37/61 (59%), Gaps = 10/61 (16%)
Query: 447 ELEAISKELQETIRIAAARKIKVDALIQTLKEEAGQEGEHAADAEREGSAENDEEHSSSS 506
+L+AI KEL + K KVD+L++ L++ ++ + A + + + +++EE SSSS
Sbjct: 192 DLQAIKKELTQI-------KQKVDSLLENLEKMEKEQSKQAVEMKND---KSEEEQSSSS 241
Query: 507 V 507
V
Sbjct: 242 V 242
>ODO2_SCHPO (O94681) Probable dihydrolipoyllysine-residue
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) (E2) (Probable dihydrolipoamide
succinyltransferase component of 2-oxoglutarate dehydrog
Length = 452
Score = 32.3 bits (72), Expect = 3.5
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 67 DYNIFVIDSSDDEDVPRTATHLQKQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDS 126
D +I VID+S +A + +VKT + +L TPQ S E+ + G +
Sbjct: 110 DQDIAVIDTSAAPPEGGSAGPKKDEVKTADADAAKDLSTPQDSS-KPIEEKPMPDLGAEQ 168
Query: 127 YQRAPKKSMEDSLARKRLPYTPEAKRPKLEPNLQSHKLIKTKFKPS------EDMKLTPT 180
+ AP + A++ +P+ K K EP QS +PS + +K+
Sbjct: 169 KESAPSSTKPAPDAKEPEFSSPKPKPAKSEPVKQSKPKATETARPSSFSRNEDRVKMNRM 228
Query: 181 QLHLAAYIFHPDN-IQTETIFKIGNISATV 209
+L +A + N + T F ++SA V
Sbjct: 229 RLRIAERLKESQNRAASLTTFNECDMSAVV 258
>DD10_HUMAN (Q13206) Probable ATP-dependent RNA helicase DDX10
(DEAD-box protein 10)
Length = 875
Score = 32.3 bits (72), Expect = 3.5
Identities = 23/89 (25%), Positives = 41/89 (45%), Gaps = 14/89 (15%)
Query: 90 KQVKTEVLERQHELITPQGKSFLQFEQNKVFGSGKDSYQRAPKKSMEDSLARKRLPYTPE 149
K+V T+ L+R E + FL+ +++ VFG + KK +S +K++ E
Sbjct: 617 KEVPTQFLDRDEE---EEDADFLKVKRHNVFGLALKDEKTLQKKDPSNSSIKKKMTKVAE 673
Query: 150 AKRPKLEPNLQSHKLIKTKFKPSEDMKLT 178
AK K++K FK ++ + T
Sbjct: 674 AK-----------KVMKRNFKVNKKITFT 691
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,704,667
Number of Sequences: 164201
Number of extensions: 2902425
Number of successful extensions: 9301
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 9267
Number of HSP's gapped (non-prelim): 64
length of query: 579
length of database: 59,974,054
effective HSP length: 116
effective length of query: 463
effective length of database: 40,926,738
effective search space: 18949079694
effective search space used: 18949079694
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Lotus: description of TM0344.11