BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0343.1
(338 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 239 7e-63
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 209 8e-54
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 178 2e-44
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 104 3e-22
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 76 1e-13
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 65 2e-10
YME4_YEAST (Q04711) Transposon Ty1 protein B 51 5e-06
YMD9_YEAST (Q03434) Transposon Ty1 protein B 45 2e-04
YJZ7_YEAST (P47098) Transposon Ty1 protein B 45 2e-04
YA03_HUMAN (O60809) Hypothetical protein DJ845O24.1 (Fragment) 35 0.21
ADEC_DEIRA (Q9RYP0) Adenine deaminase (EC 3.5.4.2) (Adenase) (Ad... 30 6.6
SMER_SERMA (P52683) Carbapenem-hydrolyzing beta-lactamase transc... 30 8.6
SCAP_HUMAN (Q12770) Sterol regulatory element binding protein cl... 30 8.6
PTDA_ECOLI (P24241) PTS system, arbutin-, cellobiose-, and salic... 30 8.6
NMCR_ENTCL (P52676) Carbapenem-hydrolyzing beta-lactamase transc... 30 8.6
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 239 bits (610), Expect = 7e-63
Identities = 119/225 (52%), Positives = 153/225 (67%), Gaps = 1/225 (0%)
Query: 15 YILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQSTY 74
Y+LLYVDDI+L SS+ L + L+S F+MKDLGP+ YFLGI + H GLFLSQ+ Y
Sbjct: 2 YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKY 61
Query: 75 ASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQYLTFTRPDISYA 134
A +I+ AGM C P +TP+ K SS S D + +RS+ GALQYLT TRPDISYA
Sbjct: 62 AEQILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120
Query: 135 VQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTDADWGGCPDTRR 194
V VC MH P LKRVLRYV+GT+ +GL+++ + + ++ D+DW GC TRR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180
Query: 195 STSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCW 239
ST+G+C FLG N+ISWS+KRQPT+SRSS E EYR +A +E W
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 209 bits (532), Expect = 8e-54
Identities = 121/349 (34%), Positives = 194/349 (54%), Gaps = 19/349 (5%)
Query: 1 DHSLFIFRRGT--DIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGI 58
D ++I +G + Y+LLYVDD+++ +F L +F M DL + +F+GI
Sbjct: 1067 DRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGI 1126
Query: 59 AVTRHAGGLFLSQSTYASEIIARAGMASCNPSATPVDTK---QKLSSSS--GTPCEDATL 113
+ ++LSQS Y +I+++ M +CN +TP+ +K + L+S TPC
Sbjct: 1127 RIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC----- 1181
Query: 114 YRSLAGALQYLTF-TRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYP 172
RSL G L Y+ TRPD++ AV + + ++E LKRVLRY++GT+ L ++
Sbjct: 1182 -RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKL-IFK 1239
Query: 173 SPIA---KLVSYTDADWGGCPDTRRSTSGYCVFLGD-NLISWSSKRQPTLSRSSAEAEYR 228
+A K++ Y D+DW G R+ST+GY + D NLI W++KRQ +++ SS EAEY
Sbjct: 1240 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1299
Query: 229 GVANVVSESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVR 288
+ V E+ W++ LL ++ L ++ DN I ++ NP H+R KHI++ HF R
Sbjct: 1300 ALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAR 1359
Query: 289 EKVARGQARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSVGEPPASTA 337
E+V + ++P+ +Q+ADIFTK LP F + R L + + S A
Sbjct: 1360 EQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGLLQDDQSNA 1408
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 178 bits (451), Expect = 2e-44
Identities = 118/316 (37%), Positives = 164/316 (51%), Gaps = 13/316 (4%)
Query: 16 ILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGG--LFLSQST 73
+LLYVDD+++V L L+ F MKDLGP LG+ + R L+LSQ
Sbjct: 1005 LLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEK 1064
Query: 74 YASEIIARAGMASCNPSATPVDTKQKLSSSS-GTPCEDA-----TLYRSLAGALQY-LTF 126
Y ++ R M + P +TP+ KLS T E+ Y S G+L Y +
Sbjct: 1065 YIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVC 1124
Query: 127 TRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPS-PIAKLVSYTDAD 185
TRPDI++AV V + P EH A+K +LRY+RGT L S PI K YTDAD
Sbjct: 1125 TRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILK--GYTDAD 1182
Query: 186 WGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVSESCWIRNLLL 245
G D R+S++GY ISW SK Q ++ S+ EAEY E W++ L
Sbjct: 1183 MAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQ 1242
Query: 246 ELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQARVLHVPSRH 305
EL + +V+CD+ SAI LS N ++H RTKHI++ H++RE V +VL + +
Sbjct: 1243 ELGLHQKEY-VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNE 1301
Query: 306 QIADIFTKGLPRVLFD 321
AD+ TK +PR F+
Sbjct: 1302 NPADMLTKVVPRNKFE 1317
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 104 bits (260), Expect = 3e-22
Identities = 71/239 (29%), Positives = 113/239 (46%), Gaps = 3/239 (1%)
Query: 1 DHSLFIFRRGTDIAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAV 60
+H L+ YI +YVDD+++ A S + L ++MKDLG + FLG+ +
Sbjct: 69 EHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNI 128
Query: 61 TRHAGG-LFLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAG 119
+ G + LS Y ++ + + + + + TP+ + L ++ +D T Y+S+ G
Sbjct: 129 HQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVG 188
Query: 120 ALQYLTFT-RPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKL 178
L + T RPDISY V + + P H+ + +RVLRY+ T + L L
Sbjct: 189 QLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQVAL 248
Query: 179 VSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKR-QPTLSRSSAEAEYRGVANVVSE 236
Y DA G D ST GY L ++WSSK+ + + S EAEY + V E
Sbjct: 249 TVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYITASETVME 307
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 76.3 bits (186), Expect = 1e-13
Identities = 34/78 (43%), Positives = 50/78 (63%)
Query: 123 YLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYT 182
YLT TRPD+++AV ++ A T M A+ +VL YV+GT+ GL + +L ++
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFA 61
Query: 183 DADWGGCPDTRRSTSGYC 200
D+DW CPDTRRS +G+C
Sbjct: 62 DSDWASCPDTRRSVTGFC 79
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 65.5 bits (158), Expect = 2e-10
Identities = 75/334 (22%), Positives = 141/334 (41%), Gaps = 24/334 (7%)
Query: 16 ILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPL------SYFLG--IAVTRHAGGL 67
I +YVDD ++ AS+ F+ L S F +K G L + LG + + G +
Sbjct: 1458 IAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDLVYNKRLGTI 1517
Query: 68 FLSQSTYASEIIARAG--MASCNPSATP------VDTKQKLSSSSGTPCEDATL-YRSLA 118
L+ ++ + + + + S+ P +D K+ + S L + L
Sbjct: 1518 DLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQGVLKLQQLL 1577
Query: 119 GALQYLTFT-RPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYP--SPI 175
G L Y+ R DI +AV++V ++ PH + ++++Y+ G+H +
Sbjct: 1578 GELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGIHYDRDCNKD 1637
Query: 176 AKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAEYRGVANVVS 235
K+++ TDA G D + S G ++ G N+ + S + SS EAE + +
Sbjct: 1638 KKVIAITDASVGSEYDAQ-SRIGVILWYGMNIFNVYSNKSTNRCVSSTEAELHAIYEGYA 1696
Query: 236 ESCWIRNLLLELHFPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIHFVREKVARGQ 295
+S ++ L EL + ++ D+ AI + K + ++EK+
Sbjct: 1697 DSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTEIIKEKIKEKS 1756
Query: 296 ARVLHVPSRHQIADIFTKGLPRVLFDDFRSSLSV 329
++L + + IAD+ TK V DF+ + V
Sbjct: 1757 IKLLKITGKGNIADLLTK---PVSASDFKRFIQV 1787
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 50.8 bits (120), Expect = 5e-06
Identities = 72/331 (21%), Positives = 135/331 (40%), Gaps = 40/331 (12%)
Query: 16 ILLYVDDIILVASSHALRKSFMALLASEFAMK--DLG----PLSY-FLGIAVTRHAGG-L 67
I L+VDD+IL + K + L ++ K +LG + Y LG+ + G +
Sbjct: 995 ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYM 1054
Query: 68 FLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTP----------------CEDA 111
L +E I + + P++ K + S+ G P E
Sbjct: 1055 KLGMENSLTEKIPKLNV--------PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1106
Query: 112 TLYRSLAGALQYLTFT-RPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGT----LTY 166
+ L G Y+ + R D+ Y + + H+ P + + +++++ T L +
Sbjct: 1107 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1166
Query: 167 GLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAE 226
+ P KLV+ +DA +G P +S G L +I S + S+ EAE
Sbjct: 1167 HKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1225
Query: 227 YRGVANVVSESCWIRNLLLELH-FPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIH 285
++ V + +L+ EL+ P+++ L + +I +S N R +
Sbjct: 1226 IHAISESVPLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAM 1284
Query: 286 FVREKVARGQARVLHVPSRHQIADIFTKGLP 316
+R++V+ V ++ ++ IAD+ TK LP
Sbjct: 1285 RLRDEVSGNHLHVCYIETKKNIADVMTKPLP 1315
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 45.4 bits (106), Expect = 2e-04
Identities = 72/331 (21%), Positives = 132/331 (39%), Gaps = 40/331 (12%)
Query: 16 ILLYVDDIILVASSHALRKSFMALLASEFAMK--DLG----PLSY-FLGIAVTRHAGG-L 67
I L+VDD+IL + K + L ++ K +LG + Y LG+ + G +
Sbjct: 995 ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYM 1054
Query: 68 FLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTP----------------CEDA 111
L +E I + + P++ K + S+ G P E
Sbjct: 1055 KLGMENSLTEKIPKLNV--------PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1106
Query: 112 TLYRSLAGALQYLTFT-RPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGT----LTY 166
+ L G Y+ + R D+ Y + + H+ P + + +++++ T L +
Sbjct: 1107 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1166
Query: 167 GLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAE 226
+ P KLV+ +DA +G P +S G L +I S + S+ EAE
Sbjct: 1167 HKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAE 1225
Query: 227 YRGVANVVSESCWIRNLLLELH-FPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIH 285
++ V + L+ EL+ P+ + L + +I S N R +
Sbjct: 1226 IHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNE-EKFRNRFFGTKAM 1284
Query: 286 FVREKVARGQARVLHVPSRHQIADIFTKGLP 316
+R++V+ V ++ ++ IAD+ TK LP
Sbjct: 1285 RLRDEVSGNNLYVYYIETKKNIADVMTKPLP 1315
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 45.4 bits (106), Expect = 2e-04
Identities = 72/331 (21%), Positives = 132/331 (39%), Gaps = 40/331 (12%)
Query: 16 ILLYVDDIILVASSHALRKSFMALLASEFAMK--DLG----PLSY-FLGIAVTRHAGG-L 67
I L+VDD+IL + K + L ++ K +LG + Y LG+ + G +
Sbjct: 1422 ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYM 1481
Query: 68 FLSQSTYASEIIARAGMASCNPSATPVDTKQKLSSSSGTP----------------CEDA 111
L +E I + + P++ K + S+ G P E
Sbjct: 1482 KLGMENSLTEKIPKLNV--------PLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKV 1533
Query: 112 TLYRSLAGALQYLTFT-RPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGT----LTY 166
+ L G Y+ + R D+ Y + + H+ P + + +++++ T L +
Sbjct: 1534 HEMQKLIGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIW 1593
Query: 167 GLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGYCVFLGDNLISWSSKRQPTLSRSSAEAE 226
+ P KLV+ +DA +G P +S G L +I S + S+ EAE
Sbjct: 1594 HKNKPTEPDNKLVAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAE 1652
Query: 227 YRGVANVVSESCWIRNLLLELH-FPLSQATLVHCDNVSAIYLSGNPVHHQRTKHIEMDIH 285
++ V + L+ EL+ P+ + L + +I S N R +
Sbjct: 1653 IHAISESVPLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNE-EKFRNRFFGTKAM 1711
Query: 286 FVREKVARGQARVLHVPSRHQIADIFTKGLP 316
+R++V+ V ++ ++ IAD+ TK LP
Sbjct: 1712 RLRDEVSGNNLYVYYIETKKNIADVMTKPLP 1742
>YA03_HUMAN (O60809) Hypothetical protein DJ845O24.1 (Fragment)
Length = 459
Score = 35.4 bits (80), Expect = 0.21
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Query: 129 PDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTDADW 186
P +S+ Q + H T M ALK +LR+ G GL LYP+P+ L +W
Sbjct: 371 PALSHCSQLTTFNFHGNETS-MNALKDLLRHTGGLSKLGLELYPAPLESLDYKGHVNW 427
>ADEC_DEIRA (Q9RYP0) Adenine deaminase (EC 3.5.4.2) (Adenase)
(Adenine aminase)
Length = 536
Score = 30.4 bits (67), Expect = 6.6
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 9/120 (7%)
Query: 80 ARAGMASCNPSATPVDTKQKLSSSSGTPCEDATLYRSLAGALQYLTFTRPDISYAVQQVC 139
A AG+ S + + TP + +++L + + + R+LA L P + ++
Sbjct: 235 AAAGLHSDHEATTPEEARERLRAGLWLMVREGSAARNLAALL-------PVLRDLPRRAL 287
Query: 140 LHMHAPHTEHMLALKRVLRYVRGTLTYGLHLYPSPIAKLVSYTDADWGGCPDTRRSTSGY 199
L + +L L + R +R + GLH P+ LV+ A++ G D GY
Sbjct: 288 LVSDDVSVDELLELGHLDRLLRTCVAGGLH--PADAVALVTSQPAEYWGLHDLGVIAPGY 345
>SMER_SERMA (P52683) Carbapenem-hydrolyzing beta-lactamase
transcriptional activator
Length = 292
Score = 30.0 bits (66), Expect = 8.6
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 115 RSLAGALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRG--TLTYGLHLYP 172
R+ + +YL FT+ + V Q + H E +L + R RG GLHL P
Sbjct: 11 RAFEASARYLNFTKAGLELHVSQAAVSQHVRTLEAILGVNLFKRLPRGLQLTEEGLHLLP 70
>SCAP_HUMAN (Q12770) Sterol regulatory element binding protein
cleavage-activating protein (SREBP cleavage-activating
protein) (SCAP)
Length = 1278
Score = 30.0 bits (66), Expect = 8.6
Identities = 32/129 (24%), Positives = 55/129 (41%), Gaps = 8/129 (6%)
Query: 14 AYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVTRHAGGLFLSQST 73
AYI I +V S L + + + S M +G + F G+ T + G +F
Sbjct: 297 AYIYFSTRKIDMVKSKWGLALAAVVTVLSSLLMS-VGLCTLF-GLTPTLNGGEIF----P 350
Query: 74 YASEIIARAGMASCNPS--ATPVDTKQKLSSSSGTPCEDATLYRSLAGALQYLTFTRPDI 131
Y +I + S +TPVD + KL + G E ++ +++A L + +
Sbjct: 351 YLVVVIGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTL 410
Query: 132 SYAVQQVCL 140
A+Q+ CL
Sbjct: 411 VPAIQEFCL 419
>PTDA_ECOLI (P24241) PTS system, arbutin-, cellobiose-, and
salicin-specific IIABC component (EIIABC-Asc) (Arbutin-,
cellobiose-, and salicin-permease IIABC component)
(Phosphotransferase enzyme II, ABC component) (EC
2.7.1.69) (EII-Asc)
Length = 485
Score = 30.0 bits (66), Expect = 8.6
Identities = 13/49 (26%), Positives = 29/49 (58%)
Query: 13 IAYILLYVDDIILVASSHALRKSFMALLASEFAMKDLGPLSYFLGIAVT 61
++YI +VD I + + L+ + L+A+ A+ +GP+ ++G A++
Sbjct: 231 LSYIERWVDSITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGSAIS 279
>NMCR_ENTCL (P52676) Carbapenem-hydrolyzing beta-lactamase
transcriptional activator
Length = 295
Score = 30.0 bits (66), Expect = 8.6
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 115 RSLAGALQYLTFTRPDISYAVQQVCLHMHAPHTEHMLALKRVLRYVRG--TLTYGLHLYP 172
R+ + +YL FT+ + V Q + E ML + R RG G+HL P
Sbjct: 11 RAFEASARYLNFTKAGLELHVSQAAVSQQVRTLEQMLGVALFTRVPRGLQLTDEGMHLLP 70
Query: 173 S 173
S
Sbjct: 71 S 71
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,032,668
Number of Sequences: 164201
Number of extensions: 1445519
Number of successful extensions: 3199
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3178
Number of HSP's gapped (non-prelim): 15
length of query: 338
length of database: 59,974,054
effective HSP length: 111
effective length of query: 227
effective length of database: 41,747,743
effective search space: 9476737661
effective search space used: 9476737661
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Lotus: description of TM0343.1