BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= TM0342b.10
(1246 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ... 168 7e-41
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 158 8e-38
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 139 6e-32
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 134 2e-30
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310... 128 1e-28
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 86 6e-16
MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250... 77 3e-13
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III 75 1e-12
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 73 6e-12
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 66 7e-10
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 59 8e-08
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type... 59 1e-07
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 52 1e-05
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 47 3e-04
RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa prot... 42 0.010
Y552_XYLFA (Q9PFV5) Hypothetical UPF0011 protein Xf0552 35 0.97
YQD2_SCHPO (Q9C0V0) Probable amino-acid permease PB1C11.02 35 1.3
AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein 34 2.2
CUTC_DROME (Q9VF71) Copper homeostasis protein cutC homolog 34 2.8
YF88_XYLFT (Q87B70) Hypothetical UPF0011 protein PD1588 33 3.7
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
(ORF 2)
Length = 1308
Score = 168 bits (426), Expect = 7e-41
Identities = 203/792 (25%), Positives = 343/792 (42%), Gaps = 69/792 (8%)
Query: 12 GDFNDILYAHEKE--GIRPQAPSVLQRFREFVHCSGLMDVALKGN----RFTWQSNPRDG 65
GDFN L A ++ R + SVL RE + L+DV + N FT+ RDG
Sbjct: 142 GDFNYTLDARDRNVPKKRDSSESVL---RELIAHFSLVDVWREQNPETVAFTYV-RVRDG 197
Query: 66 FVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLN-PLSPSRSKTPF-KYEVFW 123
V++ ++DR+ + +++ P SDH+ + L ++PS K + +
Sbjct: 198 HVSQSRIDRIYISSHLMSRAQSSTIRLAP--FSDHNCVSLRMSIAPSLPKAAYWHFNNSL 255
Query: 124 DEHEQCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNL----WS*QKRTFRAADKEIVRL 179
E E V W D + L+ K +L K + EI L
Sbjct: 256 LEDEGFAKSVRDTWRGWRAFQDEFATLNQWWDVGKVHLKLLCQEYTKSVSGQRNAEIEAL 315
Query: 180 KQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQ---------RSRVKWAKYGD 230
E+ +E+R + D A L+ + L R+E L + RSR++ D
Sbjct: 316 NGEVLDLEQRLSGSEDQA------LQCEYLERKEALRNMEQRQARGAFVRSRMQLLCDMD 369
Query: 231 KNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHTEGVSQ--IEE 288
+ S+FF+A ++ NR +I + G E + S Y+++F + +S EE
Sbjct: 370 RGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEE 429
Query: 289 CLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTV 348
P V+++ +L ++ E+++A+ + K+PG DGL FF+ W +
Sbjct: 430 LWDGLPV-VSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDF 488
Query: 349 CPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKE 408
+ E F L +++L+PK + +RP+S + K++++ + RLK
Sbjct: 489 HRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKS 548
Query: 409 DLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWT 468
L +I P+QS V GR I DN+ + ++ H + G S L +D KA+DR++
Sbjct: 549 VLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLS---LAFLSLDQEKAFDRVDHQ 605
Query: 469 FIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLA 528
++ TL AY F P ++ + T+ A +K+N L+ L GRG+RQG PLS L+ LA
Sbjct: 606 YLIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPLSGQLYSLA 665
Query: 529 TDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVLNLYN 588
+ +L + + GL + +ADD +L A+ V + + +Y
Sbjct: 666 IEPFLCLLRK-----RLTGLVLKEPDMRVVLSAYADDVILVAQDLV-DLERAQECQEVYA 719
Query: 589 RASGQKINVAK-SGLIFGKLAPFRNKRDIANLLHMPI-WDDP-----GHYLGLPAIWGRN 641
AS +IN +K SGL+ G L K D I W+ G YL
Sbjct: 720 AASSARINWSKSSGLLEGSL-----KVDFLPPAFRDISWESKIIKYLGVYLSAEEY---P 771
Query: 642 KSHSLVWIEEKVKEKLEGWK--ETLLNQAGKEVLIKAIIQAIPSYAMTIVHFPKTFCNSL 699
S + + +EE V +L WK +L+ G+ ++I ++ + Y + + + F +
Sbjct: 772 VSQNFIELEECVLTRLGKWKGFAKVLSMRGRALVINQLVASQIWYRLICLSPTQEFIAKI 831
Query: 700 NALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAWRVL-TNP 758
+ +F W G HW S +L ++GG G +R+Q F +Q R L +P
Sbjct: 832 QRRLLDFLW------IGKHWVSAGVSSLPLKEGGQGVVCIRSQVHTFRLQQIQRYLYADP 885
Query: 759 EALWVRVMKSLY 770
W + S Y
Sbjct: 886 SPQWCTLASSFY 897
Score = 34.3 bits (77), Expect = 2.2
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 2/59 (3%)
Query: 921 WNTIWSSHVPQKVKVFLWKASHNSLAVKYNLWRKRISPSGQCPVCCDSLETVEHLFLVC 979
W +SS VP+ WK H +L+ L R SP+ CP C E+V H + C
Sbjct: 1122 WRAFYSSLVPRPTGDLSWKVLHGALSTGEYLARFTDSPAA-CPFCGKG-ESVFHAYFTC 1178
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 158 bits (400), Expect = 8e-38
Identities = 146/600 (24%), Positives = 272/600 (45%), Gaps = 62/600 (10%)
Query: 170 RAADKEIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYG 229
R+ +EI++L+ E++++E R + ++ W E++
Sbjct: 360 RSRRQEIIKLRGEINQVETRRT---------IQRINQTRSWFFEKI-------------- 396
Query: 230 DKNSKFFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHT--EGVSQIE 287
+K K T R++ I+++R+ G ++ S Y+ ++ T E + +++
Sbjct: 397 NKIDKPLARLTKGHRDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMD 456
Query: 288 ECLHNFP-KKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKD 346
+ L + K+ Q + L +S EI +N L K+PGPDG + F++ K+
Sbjct: 457 KFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQT----FKE 512
Query: 347 TVCPAIKEFF----LSENLSSEINETIVALIPKVDS-PESVVQFRPISCCNYILKVISRI 401
+ P + + F + L + E + LIPK P + FRPIS N K++++I
Sbjct: 513 DLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKI 572
Query: 402 MVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKA 461
+ R++E + ++I P+Q F+ G NI + H + K KN+M + +D KA
Sbjct: 573 LANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINK--LKDKNHMIISLDAEKA 630
Query: 462 YDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLS 521
+D+++ F+ + L G +++ + + +KVNG ++ G RQG PLS
Sbjct: 631 FDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEKLEAIPLKSGTRQGCPLS 690
Query: 522 PYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSII 581
PYLF + +VL+ + Q Q+E K G++ E ++ L ADD +++ ++
Sbjct: 691 PYLFNIVLEVLARAIRQ-QKEIK--GIQIGKEEVKISLL--ADDMIVYISDPKNSTRELL 745
Query: 582 QVLNLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPA----- 636
++N + G KIN KS + F + +++I I + YLG+
Sbjct: 746 NLINSFGEVVGYKINSNKS-MAFLYTKNKQAEKEIRETTPFSIVTNNIKYLGVTLTKEVK 804
Query: 637 -IWGRN-KSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAII--QAIPSYAMTIVHFP 692
++ +N KS +++++KE L WK+ + G+ ++K I +AI + + P
Sbjct: 805 DLYDKNFKS-----LKKEIKEDLRRWKDLPCSWIGRINIVKMAILPKAIYRFNAIPIKIP 859
Query: 693 KTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEKGGMGFRDLRTQNLAFLARQAW 752
F N L + F W ++ K R DK T GG+ DL+ A + + AW
Sbjct: 860 TQFFNELEGAICKFVWNNK-KPRIAKSLLKDKRT----SGGITMPDLKLYYRAIVIKTAW 914
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 139 bits (349), Expect = 6e-32
Identities = 182/857 (21%), Positives = 352/857 (40%), Gaps = 100/857 (11%)
Query: 10 LIGDFNDILYAHEKEGIRPQAPSVLQRFREFVHCSGLMDVAL----KGNRFTWQSNPRDG 65
++GDFN L ++ R + +Q +H + L+D+ K +T+ S P
Sbjct: 141 IMGDFNTPLSTLDRS-TRQKINKDIQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHH- 198
Query: 66 FVTREKLDRVLANWAWRDLFPNASALAYPQVTSDHSPILLN----PLSPSRSKT----PF 117
T K D +L + + SDHS I L L+ + S T
Sbjct: 199 --TYSKTDHILGSKTLLSKCKRTEIIT--NCLSDHSAIKLELRIKKLTQNHSTTWKLNNL 254
Query: 118 KYEVFWDEHE---QCKGIVTQGWNRPTLHDDCWINLSNRIQSSKQNLWS*QKRTFRAADK 174
+W +E + K N+ T + + W + L + +++ R+
Sbjct: 255 LLNDYWVHNEMKAEIKKFFETNENKDTTYQNLWDTAKAVCRGKFIALNAHKRKQERSKID 314
Query: 175 EIVRLKQEMHRMEERPNHLVDWAGVRVIKLKIDTLWRQEELYWGQRSRVKWAKYGDKNSK 234
++ +E+ + E+ + + I+ ++ + Q+ L SR + + +K +
Sbjct: 315 TLISQLKELEKQEQTNSKASRRQEIIKIRAELKEIETQKTLQKINESRSWFFEKINKIDR 374
Query: 235 FFHASTIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHT--EGVSQIEECLHN 292
++R +N+ID +++ G +++ +Y+ ++ E + ++++ L
Sbjct: 375 PLARLIKKKREKNQIDTIKNDRGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDT 434
Query: 293 FP-KKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPA 351
+ ++ Q+ L ++ EI +N L K+PGP+G F++ + K+ + P
Sbjct: 435 YTLPRLNQEEVESLNRPITSSEIEAIINSLPNKKSPGPEGFTAEFYQRY----KEELVPF 490
Query: 352 IKEFFLSEN----LSSEINETIVALIPKVDSPESVVQ-FRPISCCNYILKVISRIMVTRL 406
+ + F S L + E + LIPK + + FRPIS N K++++I+ ++
Sbjct: 491 LLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANQI 550
Query: 407 KEDLDSLISPNQSAFV----GGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAY 462
++ + LI +Q F+ G I+ +I + Q N+M + +D KA+
Sbjct: 551 QQHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQHI------NRTKDTNHMIISIDAEKAF 604
Query: 463 DRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSP 522
D+++ F+ + L G T++ + + T + +NG + G RQG PLSP
Sbjct: 605 DKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAPPLKTGTRQGCPLSP 664
Query: 523 YLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQ 582
L + +VL+ + +QE + G++ E L+ FADD +++ E + A ++++
Sbjct: 665 LLPNIVLEVLARAI---RQEKEIKGIQLGKEEVKLS--LFADDMIVYLENPIVSAQNLLK 719
Query: 583 VLNLYNRASGQKINVAKSGLIFGKLAPFRNKR----DIANLLHMPIWDDPGHYLGLPA-- 636
+++ +++ SG KINV KS + N R I + L I YLG+
Sbjct: 720 LISNFSKVSGYKINVQKSQAFL-----YTNNRQTESQIMSELPFTIASKRIKYLGIQLTR 774
Query: 637 ----IWGRNKSHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAII--QAIPSYAMTIVH 690
++ N L ++KE WK + G+ ++K I + I + +
Sbjct: 775 DVKDLFKENYKPLL----NEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRFNAIPIK 830
Query: 691 FPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEK--GGMGFRDLRTQNLAFLA 748
P TF L F W + K TLS++ GG+ D + A +
Sbjct: 831 LPMTFFTELEKTTLKFIWNQKRAHIA-------KSTLSQKNKAGGITLPDFKLYYKATVT 883
Query: 749 RQAWRVLTNPEA-LWVRVMKSLYFPN--TSFMFAALGRNPSWMWRSLLAGRDFISRYSRW 805
+ AW N + W R S P+ +F +N W G+D S +++W
Sbjct: 884 KTAWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPEKNKQW-------GKD--SLFNKW 934
Query: 806 VVGDGKSVQVWGDNWLS 822
W +NWL+
Sbjct: 935 ---------CW-ENWLA 941
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 134 bits (337), Expect = 2e-30
Identities = 131/557 (23%), Positives = 246/557 (43%), Gaps = 48/557 (8%)
Query: 240 TIQRRNRNRIDRVRDSLGIWKEGQSDVMGAFISHYEDIFHT--EGVSQIEECLH--NFPK 295
T ++R ++ I +R+ S++ +Y+ ++ E + +I++ L + P+
Sbjct: 380 TRKKRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPR 439
Query: 296 KVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEF 355
++Q+ L +S EI + L K+PGPDG F++ K+ + P +
Sbjct: 440 -LSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQT----FKEELVPILLNL 494
Query: 356 FLSENLSSE------INETIVALIPKVDS-PESVVQFRPISCCNYILKVISRIMVTRLKE 408
F +N+ E E + LIPK P +RPIS N K++++I+ R+++
Sbjct: 495 F--QNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQ 552
Query: 409 DLDSLISPNQSAFVGGRL----IQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDR 464
+ +I +Q F+ G I+ +I V Q L +K++M L +D KA+D
Sbjct: 553 HIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKL------KNKDHMILSIDAEKAFDN 606
Query: 465 LEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYL 524
++ F+ RTL G T++ + + T + +NG S G RQG PLSP L
Sbjct: 607 IQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGVKLKSFPLRSGTRQGCPLSPLL 666
Query: 525 FVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREATSIIQVL 584
F + +VL+ + ++E G+ +E L+ FADD +++ E + T +++V+
Sbjct: 667 FNIVMEVLAIAI---REEKAIKGIHIGSEEIKLS--LFADDMIVYLENTRDSTTKLLEVI 721
Query: 585 NLYNRASGQKINVAKSGLIFGKLAPFRNKRDIANLLHMPIWDDPGHYLGLPAIWGRNK-- 642
Y+ SG KIN KS + F + ++ + + + + YLG+
Sbjct: 722 KEYSNVSGYKINTHKS-VAFIYTNNNQAEKTVKDSIPFTVVPKKMKYLGVYLTKDVKDLY 780
Query: 643 SHSLVWIEEKVKEKLEGWKETLLNQAGKEVLIKAII--QAIPSYAMTIVHFPKTFCNSLN 700
+ + +++ E + WK + G+ ++K I +AI ++ + P ++ L
Sbjct: 781 KENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSILPKAIYNFNAIPIKAPLSYFKDLE 840
Query: 701 ALVANFWWKSQGKDRGIHWRSWDKMTLSKEK--GGMGFRDLRTQNLAFLARQAWRVLTNP 758
++ +F W + K LS + GG+ DLR + + + AW N
Sbjct: 841 KIILHFIWNQKKPQIA-------KTLLSNKNKAGGITLPDLRLYYKSIVIKTAWYWHKNR 893
Query: 759 EA-LWVRVMKSLYFPNT 774
E +W R+ P T
Sbjct: 894 EVDVWNRIENQEMDPAT 910
>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
(ORF154)
Length = 154
Score = 128 bits (321), Expect = 1e-28
Identities = 62/154 (40%), Positives = 91/154 (58%), Gaps = 2/154 (1%)
Query: 680 AIPSYAMTIVHFPKTFCNSLNALVANFWWKSQGKDRGIHWRSWDKMTLSKEK-GGMGFRD 738
A+P YAM+ K C L + + FWW S R I W +W K+ SKE GG+GFRD
Sbjct: 2 ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61
Query: 739 LRTQNLAFLARQAWRVLTNPEALWVRVMKSLYFPNTSFMFAALGRNPSWMWRSLLAGRDF 798
L N A LA+Q++R++ P L R+++S YFP++S M ++G PS+ WRS++ GR+
Sbjct: 62 LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGREL 121
Query: 799 ISRYSRWVVGDGKSVQVWGDNWLSSGEALVKPIN 832
+SR +GDG +VW D W+ E + P+N
Sbjct: 122 LSRGLLRTIGDGIHTKVWLDRWIMD-ETPLPPLN 154
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 85.9 bits (211), Expect = 6e-16
Identities = 80/274 (29%), Positives = 120/274 (43%), Gaps = 17/274 (6%)
Query: 326 APGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQF 385
+PGPDG+ + I + I NL I IPK + + F
Sbjct: 359 SPGPDGITPKSAREVPSGIMLRIMNLI---LWCGNLPHSIRLARTVFIPKTVTAKRPQDF 415
Query: 386 RPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGG 445
RPIS + +++ ++ I+ TRL ++ P Q F+ DN + K
Sbjct: 416 RPISVPSVLVRQLNAILATRLNSSINW--DPRQRGFLPTDGCADNATIVDLVLRHSHKHF 473
Query: 446 QSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLS 505
+S Y+A +D+SKA+D L I TL AYG ++D V G L +G+ S
Sbjct: 474 RSC--YIA-NLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSS 530
Query: 506 PSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADD 565
+P RG++QGDPLSP LF L D L + + + G G T + FADD
Sbjct: 531 EEFVPARGVKQGDPLSPILFNLVMDRL--LRTLPSEIGAKVGNAITNAAA------FADD 582
Query: 566 SLLFAEASVREATSIIQVLNLYNRASGQKINVAK 599
+LFAE + + + L+ + G K+N K
Sbjct: 583 LVLFAETRMGLQVLLDKTLDFLS-IVGLKLNADK 615
>MC50_ARATH (P92555) Hypothetical mitochondrial protein AtMg01250
(ORF102)
Length = 122
Score = 77.0 bits (188), Expect = 3e-13
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 500 VNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTH 559
+NG + P RGLRQGDPLSPYLF+L T+VLS + +AQ++G+ G+R + SP + H
Sbjct: 14 INGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRINH 73
Query: 560 LFFADDS 566
L FADD+
Sbjct: 74 LLFADDT 80
>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
Length = 1222
Score = 74.7 bits (182), Expect = 1e-12
Identities = 47/176 (26%), Positives = 87/176 (48%), Gaps = 10/176 (5%)
Query: 356 FLSENLSSEINETIVALIPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLIS 415
F + + ++ IPK +P S +RPIS + +++ RI+ +R++ + L+S
Sbjct: 656 FSDSAIPNRWKHAVIIPIPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLS 715
Query: 416 PNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLL 475
P+Q F+ R ++V + +H +LK + K+ L D +KA+D++ + + L
Sbjct: 716 PHQHGFLNFRSCPSSLVRSISLYHSILK---NEKSLDILFFDFAKAFDKVSHPILLKKLA 772
Query: 476 AYGFHP---TWIDRVLTLVRGATYRLKVNGFLSPSLIP-GRGLRQGDPLSPYLFVL 527
+G +W L L T+ +K+N F+S + P G+ QG P LF+L
Sbjct: 773 LFGLDKLTCSWFKEFLHL---RTFSVKINKFVSSNAYPISSGVPQGSVSGPLLFIL 825
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 72.8 bits (177), Expect = 6e-12
Identities = 82/327 (25%), Positives = 137/327 (41%), Gaps = 41/327 (12%)
Query: 326 APGPDGLNGLFFKNHWGAIKDTVCPA--IKEFFLSENLSSEINETIVALIPKVDSPESVV 383
APG DGL AI T P ++ L ++ + LIPK E+
Sbjct: 22 APGSDGLTVQ-------AITRTRLPRNFVQLHLLRGHVPTPWTAMRTTLIPKDGDLENPS 74
Query: 384 QFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLK 443
+RPI+ + + +++ RI+ RL+ ++ + A + G L+ ++ +
Sbjct: 75 NWRPITIASALQRLLHRILAKRLEAAVELHPAQKGYARIDGTLVNSLLLDTY-----ISS 129
Query: 444 GGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVN-G 502
+ K Y + +D+ KA+D + + I R L G + + + +T ++V G
Sbjct: 130 RREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYITGSLSDSTTTIRVGPG 189
Query: 503 FLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFF 562
+ + RG++QGDPLSP+LF D L L G+ T + L F
Sbjct: 190 SQTRKICIRRGVKQGDPLSPFLFNAVLDELLCSLQSTP------GIGGTIGEEKIPVLAF 243
Query: 563 ADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKS---------GLIFGKLAPFRNK 613
ADD LL + V T++ V N + R G +N KS G+ + PF
Sbjct: 244 ADDLLLLEDNDVLLPTTLATVANFF-RLRGMSLNAKKSVSISVAASGGVCIPRTKPFLR- 301
Query: 614 RDIANLLHMPIWDDP------GHYLGL 634
+ N+L +P+ D GH+ GL
Sbjct: 302 --VDNVL-LPVTDRMQTFRYLGHFFGL 325
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 65.9 bits (159), Expect = 7e-10
Identities = 63/248 (25%), Positives = 100/248 (39%), Gaps = 21/248 (8%)
Query: 326 APGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEINETIVALIPKVDSPESVVQF 385
A GPDG+ W +I + + ++ LIPK F
Sbjct: 334 AAGPDGMT----TTAWNSIDECIKSLFNMIMYHGQCPRRYLDSRTVLIPKEPGTMDPACF 389
Query: 386 RPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGG 445
RP+S + L+ RI+ R+ E L+ Q AF+ + D + ++K
Sbjct: 390 RPLSIASVALRHFHRILANRIGEH--GLLDTRQRAFI----VADGVAENTSLLSAMIKEA 443
Query: 446 QSSKN--YMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGF 503
+ Y+A+ +D+ KA+D +E I L + ++ + R + RL+V
Sbjct: 444 RMKIKGLYIAI-LDVKKAFDSVEHRSILDALRRKKLPLEMRNYIMWVYRNSKTRLEVVKT 502
Query: 504 LSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFA 563
+ P RG+RQGDPLSP LF D + L + F + + L FA
Sbjct: 503 KGRWIRPARGVRQGDPLSPLLFNCVMDAVLRRLPE--------NTGFLMGAEKIGALVFA 554
Query: 564 DDSLLFAE 571
DD +L AE
Sbjct: 555 DDLVLLAE 562
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 58.9 bits (141), Expect = 8e-08
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 430 NIVVAQEAFHLL-LKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVL 488
NI++ + L LKG K Y + +D+ KA+D + I R + A+G D ++
Sbjct: 5 NIIMLEHYIKLRRLKG----KTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIM 60
Query: 489 TLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGL 548
+ + A + V G + + G++QGDPLSP LF + D L L+ Q
Sbjct: 61 STITDAYTNIVVGGRTTNKIYIRNGVKQGDPLSPVLFNIVLDELVTRLNDEQPGASM--- 117
Query: 549 RFTAESPA--LTHLFFADDSLLFAEASVREATSIIQVLNLYNRASGQKINVAKSGLI 603
+PA + L FADD LL + + S+ Y R G +N K I
Sbjct: 118 -----TPACKIASLAFADDLLLLEDRDIDVPNSLATTC-AYFRTRGMTLNPEKCASI 168
>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1004
Score = 58.5 bits (140), Expect = 1e-07
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 313 EITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEIN-ETIVA 371
E++++V + K+PGPDG+ G + WGAI + + K+ L + ++V
Sbjct: 409 EVSDSVRRCKVRKSPGPDGIVGEMVRAVWGAIPEYMFCLYKQCLLESYFPQKWKIASLVI 468
Query: 372 LIPKVDSPES-VVQFRPISCCNYILKVISRIMVTRLKEDL-DSLISPNQSAFVGGRLIQD 429
L+ +D S +RPI + + KV+ IMV RL + L D +SP Q AF G+ +D
Sbjct: 469 LLKLLDRIRSDPGSYRPICLLDNLGKVLEGIMVKRLDQKLMDVEVSPYQFAFTYGKSTED 528
Query: 430 NIVVAQEAFHLLLKGGQSSKNYMALKVDMSKAYDRLEW 467
Q K + L +D A+D L W
Sbjct: 529 AWRCVQRHVEC-----SEMKYVIGLNIDFQGAFDNLGW 561
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 51.6 bits (122), Expect = 1e-05
Identities = 69/301 (22%), Positives = 120/301 (38%), Gaps = 29/301 (9%)
Query: 273 HYEDIFHTEGVSQIEECLHNFPKKVTQQLNNKLILAVSDLEITEAVNKLGGLKAPGPDGL 332
+++D+F T G S P + L + VS +EI A + K GPDG+
Sbjct: 127 YWKDVFATGGGSAATNINRAPPAPHMETLWDP----VSLIEIKSA--RASNEKGAGPDGV 180
Query: 333 NGLFFKNHWGAIKDTVCPAIKEFFLSEN-LSSEINETIVALIPKVDSPESVVQFRPISCC 391
W A+ D + F+ + S I + PK++ FRP+S C
Sbjct: 181 T----PRSWNALDDRYKRLLYNIFVFYGRVPSPIKGSRTVFTPKIEGGPDPGVFRPLSIC 236
Query: 392 NYILKVISRIMVTRLKEDLDSLISPNQSAF--VGGRLIQDNIVVAQEAFHLLLKGGQSSK 449
+ IL+ ++I+ R Q+A+ + G I +++ A ++ + + K
Sbjct: 237 SVILREFNKILARRFVSCY--TYDERQTAYLPIDGVCINVSMLTA-----IIAEAKRLRK 289
Query: 450 NYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGATYRLKVNGFLSPSLI 509
+D+ KA++ + + + + G P +D + + ++ G + I
Sbjct: 290 ELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIADMYNNVITEMQFEGKCELASI 349
Query: 510 PGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLF 569
G+ QGDPLS LF LA + L EG RF + ++DD LL
Sbjct: 350 LA-GVYQGDPLSGPLFTLAYEK---ALRALNNEG-----RFDIADVRVNASAYSDDGLLL 400
Query: 570 A 570
A
Sbjct: 401 A 401
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 47.0 bits (110), Expect = 3e-04
Identities = 69/307 (22%), Positives = 114/307 (36%), Gaps = 35/307 (11%)
Query: 308 AVSDLEITEAVNKLGGLKAPGPDGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSSEIN- 366
A+ E+ V +L ++PG DG+NG K W AI + + +E
Sbjct: 433 ALEVFEVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKC 492
Query: 367 ETIVALIPKVDSPE-SVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGR 425
+V+L+ D + +R I KV+ IMV R++E L Q F GR
Sbjct: 493 PRVVSLLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCR-WQFGFRQGR 551
Query: 426 LIQDNIVVAQEAFHLLLKGGQSSKNY-MALKVDMSKAYDRLEWTFIERTLLAYGFHPTWI 484
++D H+ G S+ Y + VD A+D +EW+ L G +
Sbjct: 552 CVED------AWRHVKSSVGASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCREMGL 605
Query: 485 DRVLTLVRGATYRLKVNGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFMLSQAQQEGK 544
+ R A R P RG QG P+++ + DVL L
Sbjct: 606 WQSFFSGRRAVIRSSSGTVEVPVT---RGCPQGSISGPFIWDILMDVLLQRL-------- 654
Query: 545 FFGLRFTAESPALTHLFFADDSLLFAEASVR-----EATSIIQVLNLYNRASGQKINVAK 599
P +ADD LL E + R + ++ ++ + G ++ +K
Sbjct: 655 ---------QPYCQLSAYADDLLLLVEGNSRAVLEEKGAQLMSIVETWGAEVGDCLSTSK 705
Query: 600 SGLIFGK 606
+ ++ K
Sbjct: 706 TVIMLLK 712
>RTP2_TRYBG (P15594) Retrotransposable element SLACS 132 kDa protein
(ORF2)
Length = 1182
Score = 42.0 bits (97), Expect = 0.010
Identities = 59/250 (23%), Positives = 110/250 (43%), Gaps = 29/250 (11%)
Query: 306 ILAVSDLEITEAV-NKLGGLKAPGPDGLNG--LFFKNHWGAIKDTVCPAIKEFFLSENLS 362
+++V E+ + + +L APG DG L+ A+K + +K+ ++ ++S
Sbjct: 506 VVSVDAEEVAKTIARRLTRGAAPGLDGWTRELLYPLTLDPALKMEIAAVVKDI-INADVS 564
Query: 363 SEINETIVAL-IPKVDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAF 421
E+ + A + + P ++RPI + K+ S I ++R+ + + S Q
Sbjct: 565 MEVGRRLQATSLTVLRKPNG--KYRPIGAESVWAKLASHIAISRVMKTAEKKFSGIQFG- 621
Query: 422 VGGRLIQDNIVVAQEAF----HLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAY 477
VGG I++ I ++ F L + G+++ N ++ + + Y W+
Sbjct: 622 VGGH-IEEAIAKIRKDFATKGSLAMLDGRNAYNAISRRAILEAVYGDSTWS--------- 671
Query: 478 GFHPTWIDRVLTLVRGATYRLKV--NGFLSPSLIPGRGLRQGDPLSPYLFVLATDVLSFM 535
P W R+++L+ G T + NG L + RG+RQG L P LF + T
Sbjct: 672 ---PLW--RLVSLLLGTTGEVGFYENGKLCHTWESTRGVRQGMVLGPLLFSIGTLATLRR 726
Query: 536 LSQAQQEGKF 545
L Q E +F
Sbjct: 727 LQQTFPEAQF 736
>Y552_XYLFA (Q9PFV5) Hypothetical UPF0011 protein Xf0552
Length = 273
Score = 35.4 bits (80), Expect = 0.97
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 470 IERTLLAYGFH--PTWIDRVLT-LVRGATYRLKVN---------GFLSPSLIPGRGLRQG 517
IER LLA H T +R++T L+ GA+ L + GFL G+R
Sbjct: 51 IERPLLALHAHNEDTLAERIITRLISGASLALVSDAGTPLISDPGFLLVRAARAAGIRVT 110
Query: 518 DPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREA 577
P + A V ++ EG F + TA LTHL +L+F EAS R A
Sbjct: 111 PVPGPSALIAALSVSGLPSNRFTFEG-FLPAKPTARRDRLTHLAHEPRTLIFYEASHRIA 169
Query: 578 TSIIQVLNLY 587
+ + ++
Sbjct: 170 ECLTDLATIF 179
>YQD2_SCHPO (Q9C0V0) Probable amino-acid permease PB1C11.02
Length = 505
Score = 35.0 bits (79), Expect = 1.3
Identities = 39/134 (29%), Positives = 59/134 (43%), Gaps = 15/134 (11%)
Query: 522 PYLFVLATDVLSFMLSQAQQEGKFFG--LRFTAESPALTHLFFADDSLLFAEA-SVREAT 578
P+L VLAT + + + Q GK +G L A S ++ +F A SL F +A V+ T
Sbjct: 359 PWLSVLATSATAILCLMSSQAGKTWGFLLNVIAVSNQISWIFIAVSSLRFRKALRVQGKT 418
Query: 579 SIIQVLNLYNRASGQKINVAKSGLI-----FGKLAPFRNKRDIANLLHMPIWDDPGHYLG 633
+ N + G I + +G+ + L PFR ++ + +PI LG
Sbjct: 419 HRLYFPN-WTYPVGPYIIILLNGVFLFLQGYKSLYPFRLSLFVSYYMEIPI------VLG 471
Query: 634 LPAIWGRNKSHSLV 647
L IW K LV
Sbjct: 472 LYLIWKIYKKTKLV 485
>AI1M_YEAST (P03875) COX1/OXI3 intron 1 protein
Length = 834
Score = 34.3 bits (77), Expect = 2.2
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 14/149 (9%)
Query: 376 VDSPESVVQFRPISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQ 435
V+ P+ RP+S N K++ +M L D +S + F Q I +
Sbjct: 313 VNIPKPKGGMRPLSVGNPRDKIVQEVMRMILDTIFDKKMSTHSHGFRKNMSCQTAIWEVR 372
Query: 436 EAFHLLLKGGQSSKNYMALKVDMSKAYDRLEWTFIERTLLAYGFHPTWIDRVLTLVRGAT 495
F GG + ++VD+ K +D + I + L Y +ID V L+R A
Sbjct: 373 NMF-----GGSN----WFIEVDLKKCFDTISHDLIIKELKRYISDKGFIDLVYKLLR-AG 422
Query: 496 YRLKVNGFLSPSLIPGRGLRQGDPLSPYL 524
Y + + P L GL QG +SP L
Sbjct: 423 YIDEKGTYHKPML----GLPQGSLISPIL 447
>CUTC_DROME (Q9VF71) Copper homeostasis protein cutC homolog
Length = 263
Score = 33.9 bits (76), Expect = 2.8
Identities = 42/171 (24%), Positives = 63/171 (36%), Gaps = 31/171 (18%)
Query: 330 DGLNGLFFKNHWGAIKDTVCPAIKEFFLSENLSS--EINETIVALIPKVDSPESVVQFRP 387
D + F GA + +C A+ E L+ ++ + I ET+ I + P F
Sbjct: 17 DSIRSAFAAEEGGASRIELCSALGEGGLTPSIGTLKTIKETLTMPIYCMLRPRRGTDF-- 74
Query: 388 ISCCNYILKVISRIMVTRLKEDLDSLISPNQSAFVGGRLIQDNIVVAQEAFHLLLKGGQS 447
V S + L D+D L FV G L D + + H+LL G
Sbjct: 75 ---------VYSDEEMCALLTDMDLLRENGADGFVFGSLNPDRSINVDQCRHVLLASG-- 123
Query: 448 SKNYMALKVDMSKAYDRLEWTFIE-----------RTLLAYGFHPTWIDRV 487
L V +A+D + ++ R LL+ GF PT D V
Sbjct: 124 -----GLPVTFHRAFDLTDQKSMDENVDMLRELGFRRLLSSGFRPTAADGV 169
>YF88_XYLFT (Q87B70) Hypothetical UPF0011 protein PD1588
Length = 273
Score = 33.5 bits (75), Expect = 3.7
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 470 IERTLLAYGFH--PTWIDRVLT-LVRGATYRLKVN---------GFLSPSLIPGRGLRQG 517
IER LLA H T +R++T L+ G + L + GFL G+R
Sbjct: 51 IERPLLALHAHNEDTLAERIITRLISGESLALVSDAGTPLISDPGFLLVRAARAAGIRVT 110
Query: 518 DPLSPYLFVLATDVLSFMLSQAQQEGKFFGLRFTAESPALTHLFFADDSLLFAEASVREA 577
P + A V ++ EG F + TA LTHL +L+F EAS R A
Sbjct: 111 PVPGPSALIAALSVSGLPSNRFTFEG-FLPAKPTARRDRLTHLAHEPRTLIFYEASHRIA 169
Query: 578 TSIIQVLNLY 587
+ + ++
Sbjct: 170 ECLTDLATIF 179
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,441,676
Number of Sequences: 164201
Number of extensions: 6445240
Number of successful extensions: 13537
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 13493
Number of HSP's gapped (non-prelim): 39
length of query: 1246
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1124
effective length of database: 39,941,532
effective search space: 44894281968
effective search space used: 44894281968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 72 (32.3 bits)
Lotus: description of TM0342b.10