BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= TM0338.2
         (282 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ULA4_HCMVA (P16735) Virion protein UL104                               31  3.9
SYD_MYCPE (Q8EWB7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...    31  3.9
HMEN_DROVI (P09145) Segmentation polarity homeobox protein engra...    31  3.9
HMEN_DROME (P02836) Segmentation polarity homeobox protein engra...    31  3.9
SA47_DROME (Q960T2) Synapse-associated protein of 47 kDa               30  5.1
GIDB_THETN (Q8R6L0) Methyltransferase gidB (EC 2.1.-.-) (Glucose...    30  5.1
LONM_YEAST (P36775) Lon protease homolog, mitochondrial precurso...    30  6.6
ATXL_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prote...    30  6.6
M12_STRPY (P19401) M protein, serotype 12 precursor (Fragment)         30  8.7

>ULA4_HCMVA (P16735) Virion protein UL104
          Length = 697

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 26/92 (28%), Positives = 35/92 (37%), Gaps = 7/92 (7%)

Query: 185 DQVDEPYMCKRFVRGLRADIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMR 244
           D V E Y+   F   + A  +DS       +F   VE     E  + R+M R   GG   
Sbjct: 591 DPVPEAYLQLSFGEIVAAAYDDS-------KFCRYVELICSREKARRRQMSREAAGGVPE 643

Query: 245 SSPRSYQGKGKLQMKKPYQRPTGEGFTPGPYR 276
               S  G G L+   P +  T +    GP R
Sbjct: 644 RGTASSGGPGTLERSAPRRLITADEERRGPER 675


>SYD_MYCPE (Q8EWB7) Aspartyl-tRNA synthetase (EC 6.1.1.12)
           (Aspartate--tRNA ligase) (AspRS)
          Length = 580

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 128 VEVNWNSFRVAFLEKYFPDSARD----ERESQFLTLRQGSMTIPEYAAKLESLAKHFRFF 183
           V+ N+N     +L K  P+ ARD     R  +F  L Q S  I +    +  + ++F+  
Sbjct: 155 VKNNFNEIETPYLSKQTPEGARDYLVPTRSKKFFALPQ-SPQIYKQLLMVSGMDRYFQIA 213

Query: 184 RDQVDEPYMCKRFVRGLRADIEDSVRPLGIMRFQALVEK 222
           R   DE     R     + DIE S   L  +  Q++V++
Sbjct: 214 RCFRDEDLRADRQPEFTQIDIETSF--LSDLEIQSIVQE 250


>HMEN_DROVI (P09145) Segmentation polarity homeobox protein
           engrailed
          Length = 584

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 6/81 (7%)

Query: 28  QTNDNAQRRAAEDARELHRLQREAALDQNRGLNDFRRQDPPKFTGGTDPDEADLWIQEIE 87
           +TND  + R A  + +L RL+RE   ++NR L + RRQ       G +  +  +W Q   
Sbjct: 482 KTNDEKRPRTAFSSEQLARLKRE--FNENRYLTERRRQQLSSEL-GLNEAQIKIWFQNKR 538

Query: 88  KIFEVLQTSEGAKVGLATYLL 108
                ++ S G+K  LA  L+
Sbjct: 539 ---AKIKKSTGSKNPLALQLM 556


>HMEN_DROME (P02836) Segmentation polarity homeobox protein
           engrailed
          Length = 552

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 25/81 (30%), Positives = 40/81 (48%), Gaps = 6/81 (7%)

Query: 28  QTNDNAQRRAAEDARELHRLQREAALDQNRGLNDFRRQDPPKFTGGTDPDEADLWIQEIE 87
           +TND  + R A  + +L RL+RE   ++NR L + RRQ       G +  +  +W Q   
Sbjct: 450 KTNDEKRPRTAFSSEQLARLKRE--FNENRYLTERRRQQLSSEL-GLNEAQIKIWFQNKR 506

Query: 88  KIFEVLQTSEGAKVGLATYLL 108
                ++ S G+K  LA  L+
Sbjct: 507 ---AKIKKSTGSKNPLALQLM 524


>SA47_DROME (Q960T2) Synapse-associated protein of 47 kDa
          Length = 551

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 25/74 (33%), Positives = 32/74 (42%), Gaps = 9/74 (12%)

Query: 202 ADIEDSVRPLGI--MRFQALV-------EKATEVELMKNRRMDRAGTGGPMRSSPRSYQG 252
           A+I+D +R LGI  M  QAL        EK  E EL     +D  GTGG      R  + 
Sbjct: 451 AEIQDGMRKLGIDSMTQQALAATDEEQWEKDLEAELKDYEVVDEGGTGGDGGGGRRKGRK 510

Query: 253 KGKLQMKKPYQRPT 266
            G+   +     PT
Sbjct: 511 AGEDDTEADEDEPT 524


>GIDB_THETN (Q8R6L0) Methyltransferase gidB (EC 2.1.-.-) (Glucose
           inhibited division protein B)
          Length = 239

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 168 EYAAKLESLAKHFRFFRDQ-VDEPYMCKRFVRGLRADIEDSVR---PLGIMRFQALVEKA 223
           EYA     +  HF   + + ++E Y CK  +  L+ +IED +    P   +    +V K 
Sbjct: 160 EYAVPFVRVGGHFIAMKGRDIEEVYQCKNALEELKCEIEDVIEVRLPFSDILHHLIVVKK 219

Query: 224 TEVELMKNRRMDRA 237
            +V   K  R ++A
Sbjct: 220 VDVLPSKYPRREKA 233


>LONM_YEAST (P36775) Lon protease homolog, mitochondrial precursor
           (EC 3.4.21.-)
          Length = 1133

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 22/63 (34%), Positives = 28/63 (43%), Gaps = 5/63 (7%)

Query: 203 DIEDSVRPLGIMRFQALVEKATEVELMKNRRMDRAGTGGPMRSSPRSYQGKGKLQMKKPY 262
           D ++ V P    R   +V K  E E  KN R   + +GG   SS RS  G G  + K P 
Sbjct: 119 DTDNDVEPT---RDDEIVNKDQEGEASKNSRS--SASGGGQSSSSRSDSGDGSSKQKPPK 173

Query: 263 QRP 265
             P
Sbjct: 174 DVP 176


>ATXL_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)
           (Ataxin-2 related protein)
          Length = 1075

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 236 RAGTGGPMRSSPRSYQG-KGKLQMKKPYQRPTGEGFTPGP 274
           R   GGP R SP++ +  +G   +  P  RP+GE   P P
Sbjct: 399 RGINGGPSRMSPKAQRPLRGAKTLSSPSNRPSGETSVPPP 438


>M12_STRPY (P19401) M protein, serotype 12 precursor (Fragment)
          Length = 564

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 50/176 (28%), Positives = 72/176 (40%), Gaps = 26/176 (14%)

Query: 12  NQLAEMVATLVQAMTVQTNDNAQRRAAEDARELHRLQREAALDQNRGLNDFR-------R 64
           N  AE+     Q   +  +     R  E  R+  + Q EAAL Q    N          R
Sbjct: 321 NLKAELAKVTEQKQILDASRKGTARDLEAVRKSKKQQVEAALKQLEEQNKISEASRKGLR 380

Query: 65  QDPPKFTGGTDPDEADL--WIQEIEKIFEVLQTSEGAKVGLATYLLLGDAEYWWRGARGM 122
           +D           E DL     E++K+ E  Q S+ ++ GL   L   DA    R A+  
Sbjct: 381 RDLDTSREAKKQVEKDLANLTAELDKVKEEKQISDASRQGLRRDL---DAS---REAKKQ 434

Query: 123 MEANHVEVNWNSFRVAFLEKYFPDSARDERESQFLTLRQGSMTIPEYAAKLESLAK 178
           +E    E N    ++A LEK      +D  ES+ LT ++ +    E  AKLE+ AK
Sbjct: 435 VEKALEEAN---SKLAALEKL----NKDLEESKKLTEKEKA----ELQAKLEAEAK 479


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,399,089
Number of Sequences: 164201
Number of extensions: 1448078
Number of successful extensions: 3313
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3313
Number of HSP's gapped (non-prelim): 10
length of query: 282
length of database: 59,974,054
effective HSP length: 109
effective length of query: 173
effective length of database: 42,076,145
effective search space: 7279173085
effective search space used: 7279173085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)